AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG010876

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010876 MtrunA17_Chr2g0330041 98.324 179 2 1 1 179 1 178 2.20e-130 371
MsaG010876 MtrunA17_Chr8g0342541 76.374 182 35 5 1 179 1 177 1.15e-90 268
MsaG010876 MtrunA17_Chr8g0342521 75.556 180 36 5 1 179 1 173 5.14e-88 261
MsaG010876 MtrunA17_Chr8g0342481 76.136 176 35 6 1 173 1 172 5.33e-83 251
MsaG010876 MtrunA17_Chr1g0193371 69.014 142 44 0 1 142 1 142 3.14e-70 217
MsaG010876 MtrunA17_Chr2g0309911 73.529 136 35 1 1 136 1 135 1.08e-69 214
MsaG010876 MtrunA17_Chr7g0270891 71.429 133 38 0 1 133 1 133 2.35e-69 214
MsaG010876 MtrunA17_Chr4g0058631 76.800 125 29 0 1 125 1 125 1.41e-68 213
MsaG010876 MtrunA17_Chr1g0193801 69.173 133 41 0 1 133 1 133 1.59e-67 211
MsaG010876 MtrunA17_Chr3g0117091 74.419 129 33 0 1 129 1 129 2.53e-67 209
MsaG010876 MtrunA17_Chr8g0387421 76.471 119 28 0 1 119 1 119 3.75e-67 207
MsaG010876 MtrunA17_Chr1g0211161 75.610 123 30 0 3 125 4 126 4.57e-67 204
MsaG010876 MtrunA17_Chr5g0397231 79.091 110 23 0 1 110 1 110 3.08e-65 203
MsaG010876 MtrunA17_Chr7g0271241 74.809 131 33 0 1 131 1 131 5.06e-65 204
MsaG010876 MtrunA17_Chr4g0032401 56.213 169 59 2 11 175 16 173 2.04e-60 191
MsaG010876 MtrunA17_Chr8g0342511 94.253 87 5 0 1 87 1 87 4.85e-58 177
MsaG010876 MtrunA17_Chr3g0088461 73.394 109 29 0 8 116 18 126 8.03e-58 184
MsaG010876 MtrunA17_Chr8g0385321 64.800 125 44 0 1 125 1 125 8.37e-58 183
MsaG010876 MtrunA17_Chr8g0342531 89.888 89 9 0 1 89 1 89 4.34e-57 177
MsaG010876 MtrunA17_Chr3g0115821 51.553 161 68 2 1 158 1 154 5.37e-57 182
MsaG010876 MtrunA17_Chr3g0131121 56.774 155 60 2 1 148 1 155 8.61e-57 180
MsaG010876 MtrunA17_Chr2g0328771 73.333 105 28 0 12 116 20 124 6.06e-56 179
MsaG010876 MtrunA17_Chr1g0203411 65.517 116 40 0 1 116 1 116 1.25e-55 177
MsaG010876 MtrunA17_Chr4g0039971 60.000 125 50 0 1 125 2 126 3.01e-55 178
MsaG010876 MtrunA17_Chr5g0410961 57.353 136 51 1 1 136 1 129 9.16e-55 176
MsaG010876 MtrunA17_Chr4g0037141 60.000 125 50 0 1 125 1 125 1.01e-54 174
MsaG010876 MtrunA17_Chr8g0349261 52.830 159 64 3 1 157 1 150 1.19e-54 175
MsaG010876 MtrunA17_Chr5g0435101 62.500 120 45 0 6 125 5 124 1.68e-54 172
MsaG010876 MtrunA17_Chr6g0453471 45.408 196 85 4 1 176 1 194 1.38e-53 174
MsaG010876 MtrunA17_Chr6g0452271 48.864 176 79 3 1 165 1 176 2.39e-53 172
MsaG010876 MtrunA17_Chr7g0228891 67.241 116 38 0 1 116 1 116 3.45e-53 170
MsaG010876 MtrunA17_Chr3g0110351 61.600 125 48 0 1 125 1 125 6.31e-53 171
MsaG010876 MtrunA17_Chr7g0217741 50.633 158 68 2 1 158 1 148 7.93e-53 171
MsaG010876 MtrunA17_Chr4g0042671 55.319 141 62 1 1 141 1 140 1.47e-52 172
MsaG010876 MtrunA17_Chr1g0203441 70.370 108 32 0 9 116 10 117 1.87e-52 168
MsaG010876 MtrunA17_Chr4g0057031 60.800 125 49 0 1 125 1 125 2.35e-52 168
MsaG010876 MtrunA17_Chr5g0434571 61.600 125 48 0 1 125 37 161 2.53e-52 171
MsaG010876 MtrunA17_Chr2g0281071 56.934 137 51 2 1 136 1 130 6.30e-52 169
MsaG010876 MtrunA17_Chr5g0395281 61.017 118 46 0 8 125 8 125 7.00e-52 168
MsaG010876 MtrunA17_Chr4g0048511 54.194 155 56 3 1 154 1 141 7.36e-52 169
MsaG010876 MtrunA17_Chr8g0342461 83.333 90 14 1 1 89 1 90 8.76e-52 162
MsaG010876 MtrunA17_Chr2g0323411 56.618 136 52 1 1 136 1 129 1.21e-51 168
MsaG010876 MtrunA17_Chr4g0068061 55.147 136 55 1 1 130 1 136 3.10e-51 167
MsaG010876 MtrunA17_Chr8g0342471 82.222 90 15 1 1 89 1 90 3.91e-51 160
MsaG010876 MtrunA17_Chr1g0187761 63.793 116 42 0 1 116 1 116 1.09e-50 163
MsaG010876 MtrunA17_Chr7g0274581 60.345 116 46 0 1 116 1 116 1.70e-50 161
MsaG010876 MtrunA17_Chr6g0470971 68.224 107 34 0 9 115 11 117 4.75e-50 162
MsaG010876 MtrunA17_Chr2g0323351 61.062 113 44 0 7 119 7 119 7.42e-50 161
MsaG010876 MtrunA17_Chr3g0103281 58.462 130 54 0 1 130 1 130 8.49e-50 163
MsaG010876 MtrunA17_Chr4g0044421 49.398 166 83 1 1 165 1 166 1.41e-49 159
MsaG010876 MtrunA17_Chr1g0151941 57.983 119 49 1 1 118 1 119 1.81e-49 160
MsaG010876 MtrunA17_Chr2g0311221 63.303 109 40 0 2 110 4 112 4.66e-49 161
MsaG010876 MtrunA17_Chr1g0194951 59.524 126 51 0 1 126 1 126 6.60e-49 162
MsaG010876 MtrunA17_Chr7g0261281 59.483 116 47 0 1 116 1 116 3.24e-48 158
MsaG010876 MtrunA17_Chr7g0275911 55.738 122 54 0 1 122 1 122 3.80e-48 157
MsaG010876 MtrunA17_Chr4g0022931 50.735 136 67 0 5 140 6 141 6.07e-48 157
MsaG010876 MtrunA17_Chr4g0070641 52.143 140 61 1 1 140 1 134 6.45e-48 154
MsaG010876 MtrunA17_Chr1g0167661 58.974 117 48 0 1 117 1 117 6.89e-48 156
MsaG010876 MtrunA17_Chr4g0070611 52.143 140 61 1 1 140 1 134 1.87e-47 157
MsaG010876 MtrunA17_Chr7g0217221 58.621 116 48 0 1 116 1 116 3.29e-47 155
MsaG010876 MtrunA17_Chr1g0167691 58.120 117 49 0 1 117 1 117 4.81e-47 154
MsaG010876 MtrunA17_Chr7g0228231 58.475 118 47 1 1 116 1 118 5.00e-47 152
MsaG010876 MtrunA17_Chr3g0121241 56.667 120 52 0 6 125 36 155 6.17e-47 155
MsaG010876 MtrunA17_Chr4g0022901 58.261 115 48 0 5 119 6 120 8.65e-47 154
MsaG010876 MtrunA17_Chr6g0450101 57.377 122 50 1 1 120 1 122 1.06e-46 152
MsaG010876 MtrunA17_Chr4g0028311 57.377 122 51 1 1 121 1 122 1.32e-46 155
MsaG010876 MtrunA17_Chr7g0254411 56.897 116 50 0 1 116 1 116 1.84e-45 152
MsaG010876 MtrunA17_Chr8g0346561 56.897 116 50 0 1 116 1 116 3.29e-45 150
MsaG010876 MtrunA17_Chr4g0022911 55.652 115 51 0 5 119 6 120 6.29e-45 150
MsaG010876 MtrunA17_Chr1g0152011 57.627 118 49 1 1 117 1 118 7.52e-45 151
MsaG010876 MtrunA17_Chr5g0400821 56.780 118 50 1 1 117 1 118 1.63e-44 149
MsaG010876 MtrunA17_Chr3g0092401 44.000 175 81 3 6 164 7 180 1.72e-44 149
MsaG010876 MtrunA17_Chr4g0060721 55.172 116 52 0 1 116 2 117 2.12e-44 149
MsaG010876 MtrunA17_Chr3g0135311 55.085 118 52 1 1 117 1 118 3.21e-44 149
MsaG010876 MtrunA17_Chr7g0264641 56.303 119 51 1 1 118 1 119 4.06e-44 147
MsaG010876 MtrunA17_Chr7g0269831 55.639 133 57 1 1 133 1 131 4.69e-44 149
MsaG010876 MtrunA17_Chr1g0168661 56.250 112 49 0 4 115 13 124 5.37e-44 146
MsaG010876 MtrunA17_Chr5g0417821 57.895 114 48 0 12 125 7 120 7.66e-44 147
MsaG010876 MtrunA17_Chr1g0209661 57.009 107 46 0 9 115 24 130 1.40e-43 147
MsaG010876 MtrunA17_Chr6g0453211 59.048 105 43 0 6 110 6 110 3.64e-43 146
MsaG010876 MtrunA17_Chr4g0054391 60.000 110 43 1 1 109 1 110 1.66e-42 144
MsaG010876 MtrunA17_Chr1g0186061 55.856 111 49 0 5 115 13 123 1.97e-42 142
MsaG010876 MtrunA17_Chr4g0022881 56.075 107 47 0 8 114 8 114 2.18e-42 141
MsaG010876 MtrunA17_Chr2g0327351 57.658 111 46 1 1 110 1 111 2.49e-42 144
MsaG010876 MtrunA17_Chr4g0022891 41.520 171 95 3 8 176 8 175 9.14e-42 140
MsaG010876 MtrunA17_Chr6g0487491 42.487 193 94 5 1 176 1 193 1.46e-41 140
MsaG010876 MtrunA17_Chr1g0194291 53.509 114 53 0 2 115 11 124 1.89e-41 140
MsaG010876 MtrunA17_Chr8g0343831 57.009 107 46 0 10 116 6 112 3.06e-41 139
MsaG010876 MtrunA17_Chr8g0354661 57.692 104 44 0 12 115 37 140 1.71e-40 143
MsaG010876 MtrunA17_Chr4g0055981 57.944 107 45 0 9 115 52 158 2.44e-40 136
MsaG010876 MtrunA17_Chr3g0099131 57.692 104 44 0 12 115 41 144 4.65e-40 142
MsaG010876 MtrunA17_Chr1g0194301 53.846 104 48 0 12 115 33 136 5.78e-40 136
MsaG010876 MtrunA17_Chr4g0072751 54.955 111 49 1 1 110 1 111 8.97e-40 138
MsaG010876 MtrunA17_Chr1g0154031 57.692 104 44 0 12 115 76 179 9.46e-40 139
MsaG010876 MtrunA17_Chr3g0080861 55.769 104 46 0 12 115 37 140 1.34e-39 140
MsaG010876 MtrunA17_Chr2g0327821 42.857 140 74 2 9 144 3 140 3.78e-39 133
MsaG010876 MtrunA17_Chr1g0180391 42.759 145 69 2 12 142 19 163 4.63e-39 133
MsaG010876 MtrunA17_Chr7g0240821 50.833 120 59 0 17 136 6 125 7.14e-39 132
MsaG010876 MtrunA17_Chr4g0042611 62.500 88 33 0 1 88 1 88 5.97e-38 125
MsaG010876 MtrunA17_Chr5g0434911 51.327 113 55 0 7 119 16 128 2.10e-37 130
MsaG010876 MtrunA17_Chr5g0434931 53.271 107 50 0 12 118 35 141 3.74e-37 129
MsaG010876 MtrunA17_Chr7g0247131 67.470 83 27 0 43 125 9 91 4.92e-37 129
MsaG010876 MtrunA17_Chr2g0322521 58.654 104 43 0 12 115 29 132 6.14e-37 131
MsaG010876 MtrunA17_Chr7g0220341 55.963 109 46 1 12 118 25 133 8.07e-37 128
MsaG010876 MtrunA17_Chr4g0068921 55.340 103 46 0 12 114 24 126 1.07e-36 125
MsaG010876 MtrunA17_Chr5g0434831 53.774 106 49 0 12 117 7 112 1.27e-36 125
MsaG010876 MtrunA17_Chr2g0293911 56.311 103 45 0 12 114 24 126 2.21e-36 129
MsaG010876 MtrunA17_Chr4g0030881 50.000 110 48 1 13 115 8 117 2.94e-36 126
MsaG010876 MtrunA17_Chr7g0228991 53.271 107 50 0 12 118 29 135 2.97e-35 124
MsaG010876 MtrunA17_Chr8g0360111 53.333 105 49 0 8 112 21 125 5.75e-35 123
MsaG010876 MtrunA17_Chr1g0192411 52.381 105 50 0 11 115 11 115 1.00e-34 126
MsaG010876 MtrunA17_Chr8g0334881 50.893 112 54 1 4 114 2 113 1.52e-34 124
MsaG010876 MtrunA17_Chr5g0434841 50.943 106 52 0 12 117 20 125 9.12e-34 121
MsaG010876 MtrunA17_Chr5g0440781 50.000 104 51 1 12 114 12 115 2.00e-33 117
MsaG010876 MtrunA17_Chr2g0294811 57.955 88 37 0 1 88 1 88 2.33e-33 115
MsaG010876 MtrunA17_Chr4g0013361 50.000 114 56 1 12 124 10 123 4.99e-33 119
MsaG010876 MtrunA17_Chr2g0323321 58.140 86 36 0 7 92 6 91 9.77e-33 113
MsaG010876 MtrunA17_Chr5g0440761 50.000 104 51 1 12 114 12 115 1.25e-32 117
MsaG010876 MtrunA17_Chr5g0441141 50.000 104 51 1 12 114 12 115 1.31e-32 117
MsaG010876 MtrunA17_Chr5g0395221 58.025 81 34 0 8 88 8 88 1.25e-30 107
MsaG010876 MtrunA17_Chr4g0053431 44.697 132 66 2 14 139 5 135 2.76e-30 111
MsaG010876 MtrunA17_Chr5g0441131 47.115 104 54 1 12 114 9 112 7.96e-30 108
MsaG010876 MtrunA17_Chr3g0099141 52.326 86 41 0 8 93 36 121 9.91e-30 106
MsaG010876 MtrunA17_Chr5g0429661 46.602 103 52 2 14 115 122 222 4.51e-29 110
MsaG010876 MtrunA17_Chr5g0401731 33.854 192 90 6 3 170 2 180 1.28e-28 108
MsaG010876 MtrunA17_Chr3g0139671 45.000 120 62 3 14 132 85 201 6.44e-28 109
MsaG010876 MtrunA17_Chr4g0008551 48.544 103 50 2 14 115 38 138 8.71e-28 106
MsaG010876 MtrunA17_Chr6g0454921 48.649 111 52 3 8 115 7 115 1.03e-27 103
MsaG010876 MtrunA17_Chr7g0238631 50.000 104 49 2 14 116 113 214 1.46e-27 108
MsaG010876 MtrunA17_Chr6g0480581 52.083 96 43 2 14 108 4 97 5.62e-27 102
MsaG010876 MtrunA17_Chr1g0157731 46.729 107 54 2 14 119 91 195 2.89e-26 104
MsaG010876 MtrunA17_Chr4g0058991 44.444 108 57 2 9 115 204 309 4.47e-26 103
MsaG010876 MtrunA17_Chr3g0133601 48.148 108 55 1 8 115 31 137 6.94e-26 99.0
MsaG010876 MtrunA17_Chr5g0437321 48.113 106 51 3 8 112 14 116 1.65e-25 99.4
MsaG010876 MtrunA17_Chr7g0229101 59.155 71 29 0 43 113 3 73 3.03e-25 97.1
MsaG010876 MtrunA17_Chr7g0229131 56.000 75 33 0 43 117 3 77 3.97e-25 95.5
MsaG010876 MtrunA17_Chr4g0042501 45.217 115 55 3 2 115 98 205 9.16e-25 99.4
MsaG010876 MtrunA17_Chr6g0460661 46.237 93 47 2 17 108 19 109 1.11e-24 94.4
MsaG010876 MtrunA17_Chr5g0434901 56.338 71 31 0 43 113 4 74 2.43e-24 92.0
MsaG010876 MtrunA17_Chr5g0417621 46.226 106 54 2 11 115 131 234 3.20e-24 98.2
MsaG010876 MtrunA17_Chr1g0177901 36.601 153 77 5 24 161 7 154 4.58e-24 94.0
MsaG010876 MtrunA17_Chr7g0228531 43.269 104 57 2 12 115 218 319 8.98e-24 96.7
MsaG010876 MtrunA17_Chr3g0117511 42.718 103 56 2 14 115 183 283 9.12e-24 96.7
MsaG010876 MtrunA17_Chr3g0125801 48.544 103 50 2 14 115 16 116 1.06e-23 94.7
MsaG010876 MtrunA17_Chr5g0425591 47.059 85 44 1 12 95 9 93 5.19e-23 87.8
MsaG010876 MtrunA17_Chr6g0453751 49.451 91 37 2 12 93 20 110 8.22e-23 88.6
MsaG010876 MtrunA17_Chr3g0093811 47.778 90 47 0 43 132 13 102 8.31e-23 92.0
MsaG010876 MtrunA17_Chr7g0228401 45.977 87 46 1 25 111 290 375 1.93e-21 90.5
MsaG010876 MtrunA17_Chr5g0397841 45.000 100 51 3 12 110 109 205 2.47e-21 90.1
MsaG010876 MtrunA17_Chr5g0397841 26.490 151 57 2 13 109 54 204 3.94e-13 66.6
MsaG010876 MtrunA17_Chr7g0254261 43.119 109 54 3 1 108 81 182 4.78e-21 88.6
MsaG010876 MtrunA17_Chr6g0460671 35.294 170 89 6 14 168 99 262 1.07e-20 87.4
MsaG010876 MtrunA17_Chr7g0228481 40.000 100 58 2 12 111 218 315 8.39e-20 85.5
MsaG010876 MtrunA17_Chr8g0362231 33.562 146 95 2 1 146 9 152 9.68e-19 82.8
MsaG010876 MtrunA17_Chr5g0416341 40.404 99 58 1 17 115 29 126 2.35e-18 81.6
MsaG010876 MtrunA17_Chr7g0238651 30.857 175 100 5 14 174 7 174 4.57e-18 80.5
MsaG010876 MtrunA17_Chr7g0233061 36.792 106 62 4 14 119 180 280 7.97e-18 79.7
MsaG010876 MtrunA17_Chr1g0193901 51.471 68 33 0 1 68 1 68 6.01e-16 70.1
MsaG010876 MtrunA17_Chr1g0193891 51.471 68 33 0 1 68 1 68 6.01e-16 70.1
MsaG010876 MtrunA17_Chr1g0193871 51.471 68 33 0 1 68 1 68 6.01e-16 70.1
MsaG010876 MtrunA17_Chr1g0193881 51.471 68 33 0 1 68 1 68 6.01e-16 70.1
MsaG010876 MtrunA17_Chr5g0434871 54.348 46 21 0 73 118 1 46 1.36e-12 60.1
MsaG010876 MtrunA17_Chr3g0104491 38.806 67 37 1 53 115 1 67 2.06e-12 63.9
MsaG010876 MtrunA17_Chr7g0247141 53.191 47 21 1 1 46 1 47 9.64e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG010876 AT3G13890.2 95.763 118 5 0 1 118 1 118 4.23e-81 244
MsaG010876 AT3G13890.1 88.976 127 5 1 1 118 1 127 9.30e-78 236
MsaG010876 AT1G09540.1 72.932 133 36 0 1 133 1 133 1.38e-70 218
MsaG010876 AT5G26660.1 77.600 125 28 0 1 125 1 125 9.17e-70 216
MsaG010876 AT1G57560.1 69.065 139 43 0 1 139 1 139 1.91e-69 213
MsaG010876 AT4G01680.3 71.970 132 37 0 1 132 1 132 4.20e-69 210
MsaG010876 AT1G57560.2 71.756 131 37 0 1 131 1 131 8.66e-69 211
MsaG010876 AT3G12720.1 77.600 125 27 1 1 125 12 135 2.89e-68 210
MsaG010876 AT4G01680.1 71.970 132 37 0 1 132 1 132 5.73e-68 210
MsaG010876 AT1G63910.1 79.310 116 24 0 1 116 1 116 1.21e-67 211
MsaG010876 AT4G01680.2 65.972 144 37 1 1 132 1 144 2.09e-64 202
MsaG010876 AT4G09460.1 55.705 149 63 1 1 149 1 146 1.53e-58 183
MsaG010876 AT5G12870.1 75.701 107 26 0 10 116 16 122 2.61e-57 181
MsaG010876 AT2G16720.1 49.711 173 80 2 1 166 1 173 3.45e-57 181
MsaG010876 AT4G12350.1 54.777 157 67 1 1 153 1 157 5.37e-57 181
MsaG010876 AT3G08500.1 70.085 117 32 1 3 116 18 134 2.94e-56 181
MsaG010876 AT1G22640.1 56.376 149 58 1 1 149 1 142 1.48e-55 176
MsaG010876 AT5G15310.4 51.572 159 70 1 1 159 1 152 1.79e-55 176
MsaG010876 AT3G02940.2 59.200 125 51 0 1 125 1 125 2.80e-55 177
MsaG010876 AT4G38620.1 60.800 125 49 0 1 125 1 125 3.29e-55 176
MsaG010876 AT4G34990.1 54.930 142 64 0 1 142 1 142 4.37e-55 176
MsaG010876 AT5G65230.1 56.429 140 54 1 1 140 1 133 4.96e-55 176
MsaG010876 AT5G10280.1 56.818 132 57 0 1 132 1 132 5.10e-55 177
MsaG010876 AT5G15310.1 51.572 159 70 1 1 159 1 152 5.25e-55 177
MsaG010876 AT5G15310.2 51.572 159 70 1 1 159 1 152 5.85e-55 176
MsaG010876 AT3G02940.1 59.200 125 51 0 1 125 1 125 6.72e-55 176
MsaG010876 AT3G02940.3 59.200 125 51 0 1 125 1 125 6.72e-55 176
MsaG010876 AT3G61250.1 62.602 123 46 0 1 123 1 123 7.28e-55 176
MsaG010876 AT1G35515.1 52.667 150 65 2 1 145 1 149 7.84e-55 173
MsaG010876 AT3G01140.2 60.000 125 50 0 1 125 1 125 9.86e-55 177
MsaG010876 AT1G34670.1 50.943 159 74 1 1 159 1 155 1.38e-54 177
MsaG010876 AT1G06180.1 53.012 166 68 2 1 156 1 166 8.10e-54 171
MsaG010876 AT5G54230.1 59.559 136 48 1 1 136 1 129 1.72e-53 173
MsaG010876 AT5G16770.4 50.318 157 77 1 1 157 1 156 2.36e-53 172
MsaG010876 AT5G16770.3 50.318 157 77 1 1 157 1 156 2.36e-53 172
MsaG010876 AT4G22680.1 62.400 125 47 0 1 125 1 125 3.14e-53 171
MsaG010876 AT4G21440.1 56.618 136 52 1 1 136 1 129 3.95e-53 173
MsaG010876 AT4G05100.1 56.934 137 51 2 1 136 1 130 4.73e-53 172
MsaG010876 AT2G31180.1 66.379 116 39 0 1 116 1 116 4.76e-53 169
MsaG010876 AT5G16770.1 50.318 157 77 1 1 157 1 156 5.59e-53 172
MsaG010876 AT5G16770.2 50.318 157 77 1 1 157 1 156 5.59e-53 172
MsaG010876 AT3G01140.1 60.833 120 47 0 6 125 49 168 6.12e-53 173
MsaG010876 AT4G17785.2 59.524 126 50 1 1 125 1 126 1.28e-52 171
MsaG010876 AT4G17785.1 59.524 126 50 1 1 125 1 126 1.45e-52 172
MsaG010876 AT5G16600.1 54.248 153 68 1 1 151 1 153 1.82e-52 171
MsaG010876 AT1G66230.1 60.800 125 49 0 1 125 1 125 2.83e-52 169
MsaG010876 AT4G28110.1 55.147 136 54 1 1 136 1 129 1.07e-51 167
MsaG010876 AT5G14340.1 59.091 132 54 0 1 132 13 144 1.62e-51 166
MsaG010876 AT5G56110.1 58.462 130 54 0 1 130 1 130 2.65e-51 167
MsaG010876 AT2G47460.1 61.475 122 45 1 1 122 1 120 3.63e-51 168
MsaG010876 AT3G23250.1 57.031 128 53 1 1 128 1 126 8.14e-51 165
MsaG010876 AT1G56160.1 64.348 115 41 0 2 116 4 118 2.38e-50 164
MsaG010876 AT1G79180.1 63.478 115 42 0 2 116 4 118 3.12e-50 164
MsaG010876 AT5G60890.1 47.742 155 74 1 1 155 1 148 3.23e-50 164
MsaG010876 AT3G48920.1 62.617 107 40 0 8 114 14 120 1.73e-49 161
MsaG010876 AT5G52260.1 51.923 156 63 4 9 152 9 164 1.86e-49 161
MsaG010876 AT1G16490.1 61.864 118 45 0 2 119 4 121 1.29e-48 159
MsaG010876 AT3G27810.1 48.026 152 64 2 9 145 17 168 1.33e-48 157
MsaG010876 AT5G49330.1 58.537 123 51 0 1 123 1 123 1.68e-48 160
MsaG010876 AT3G62610.1 55.039 129 58 0 1 129 1 129 1.93e-48 160
MsaG010876 AT5G23000.1 61.017 118 45 1 1 117 1 118 3.51e-48 159
MsaG010876 AT5G61420.2 52.800 125 59 0 1 125 1 125 3.96e-48 160
MsaG010876 AT3G28470.1 55.034 149 60 1 1 142 1 149 7.50e-48 158
MsaG010876 AT1G74430.1 55.200 125 56 0 1 125 1 125 1.45e-47 156
MsaG010876 AT5G62320.1 51.471 136 59 1 2 130 3 138 1.99e-47 155
MsaG010876 AT5G07690.1 53.600 125 58 0 1 125 1 125 2.39e-47 157
MsaG010876 AT3G13540.1 56.667 120 52 0 6 125 17 136 2.55e-47 155
MsaG010876 AT4G25560.1 63.889 108 39 0 10 117 8 115 3.84e-47 155
MsaG010876 AT3G12820.1 61.607 112 43 0 6 117 8 119 5.18e-47 154
MsaG010876 AT5G40350.1 60.748 107 42 0 11 117 16 122 7.13e-47 152
MsaG010876 AT1G18570.1 54.545 121 54 1 6 125 6 126 7.21e-47 157
MsaG010876 AT5G07700.1 53.600 125 58 0 1 125 1 125 7.33e-47 156
MsaG010876 AT5G07700.2 53.600 125 58 0 1 125 1 125 7.33e-47 156
MsaG010876 AT1G08810.1 56.667 120 52 0 1 120 1 120 2.13e-46 154
MsaG010876 AT3G01530.1 60.952 105 41 0 12 116 25 129 5.53e-46 150
MsaG010876 AT5G57620.1 57.627 118 49 1 1 117 1 118 7.04e-46 154
MsaG010876 AT1G74650.1 57.025 121 52 0 1 121 1 121 8.86e-46 153
MsaG010876 AT3G47600.1 57.759 116 49 0 1 116 1 116 2.03e-45 152
MsaG010876 AT1G74080.1 53.175 126 59 0 6 131 6 131 2.60e-45 152
MsaG010876 AT5G65790.1 57.627 118 49 1 1 117 1 118 2.83e-45 153
MsaG010876 AT3G49690.1 56.780 118 50 1 1 117 1 118 5.06e-45 151
MsaG010876 AT3G27920.1 51.587 126 60 1 10 135 12 136 7.87e-45 148
MsaG010876 AT5G62470.2 57.759 116 49 0 1 116 1 116 1.10e-44 151
MsaG010876 AT5G52600.1 61.682 107 41 0 9 115 9 115 1.26e-44 147
MsaG010876 AT5G14750.1 59.615 104 42 0 13 116 17 120 2.50e-44 146
MsaG010876 AT1G18710.1 52.800 125 59 0 1 125 1 125 4.09e-44 147
MsaG010876 AT2G36890.1 55.462 119 52 1 1 118 1 119 5.41e-44 148
MsaG010876 AT2G36890.2 55.462 119 52 1 1 118 42 160 8.61e-44 148
MsaG010876 AT5G40330.1 58.654 104 43 0 13 116 13 116 1.02e-43 145
MsaG010876 AT4G37780.1 55.462 119 52 1 1 118 1 119 1.15e-43 147
MsaG010876 AT1G79180.2 48.649 148 43 1 2 116 4 151 1.57e-43 147
MsaG010876 AT5G35550.1 59.259 108 44 0 9 116 11 118 2.11e-43 145
MsaG010876 AT3G28910.1 57.658 111 47 0 6 116 6 116 2.76e-43 147
MsaG010876 AT3G30210.1 43.575 179 83 4 13 174 28 205 5.47e-43 145
MsaG010876 AT5G62470.1 57.759 116 48 1 1 116 1 115 6.89e-43 146
MsaG010876 AT1G48000.1 57.143 112 46 1 11 120 31 142 9.09e-43 143
MsaG010876 AT4G13480.1 61.165 103 40 0 13 115 7 109 2.32e-42 142
MsaG010876 AT1G68320.1 56.604 106 46 0 10 115 17 122 3.45e-42 143
MsaG010876 AT3G24310.1 59.434 106 43 0 13 118 19 124 3.66e-42 142
MsaG010876 AT5G06100.1 58.654 104 43 0 12 115 32 135 2.90e-41 144
MsaG010876 AT3G11440.2 53.509 114 53 0 2 115 31 144 5.98e-41 144
MsaG010876 AT4G26930.1 58.252 103 43 0 12 114 19 121 6.68e-41 142
MsaG010876 AT5G06100.5 58.654 104 43 0 12 115 32 135 1.10e-40 144
MsaG010876 AT5G06100.2 58.654 104 43 0 12 115 32 135 1.10e-40 144
MsaG010876 AT5G06100.3 58.654 104 43 0 12 115 32 135 1.10e-40 144
MsaG010876 AT5G06100.4 58.654 104 43 0 12 115 32 135 1.10e-40 144
MsaG010876 AT3G11440.3 53.509 114 53 0 2 115 31 144 2.01e-40 144
MsaG010876 AT3G11440.4 53.509 114 53 0 2 115 31 144 2.01e-40 144
MsaG010876 AT3G11440.1 53.509 114 53 0 2 115 31 144 2.01e-40 144
MsaG010876 AT1G25340.1 55.340 103 46 0 13 115 19 121 3.15e-40 138
MsaG010876 AT2G26960.1 54.717 106 48 0 9 114 17 122 9.48e-40 140
MsaG010876 AT2G32460.2 55.769 104 46 0 12 115 6 109 1.73e-39 140
MsaG010876 AT2G32460.1 55.769 104 46 0 12 115 18 121 1.76e-39 140
MsaG010876 AT5G26660.2 75.309 81 20 0 45 125 14 94 6.68e-39 135
MsaG010876 AT5G55020.1 57.143 105 45 0 12 116 26 130 1.27e-38 138
MsaG010876 AT2G47190.1 36.970 165 101 2 12 176 20 181 3.83e-38 132
MsaG010876 AT5G59780.3 51.402 107 52 0 9 115 5 111 5.50e-38 130
MsaG010876 AT3G06490.1 57.009 107 46 0 8 114 15 121 1.17e-37 132
MsaG010876 AT3G46130.1 52.427 103 49 0 13 115 10 112 4.53e-37 129
MsaG010876 AT5G49620.1 58.252 103 43 0 12 114 26 128 1.05e-36 129
MsaG010876 AT3G60460.1 55.046 109 48 1 7 114 6 114 1.49e-36 129
MsaG010876 AT3G53200.1 47.788 113 59 0 9 121 6 118 2.41e-36 126
MsaG010876 AT1G25340.2 52.427 103 44 1 13 115 19 116 2.63e-35 125
MsaG010876 AT1G25340.3 52.427 103 44 1 13 115 19 116 4.59e-35 125
MsaG010876 AT1G66370.1 45.588 136 63 2 12 136 8 143 4.66e-35 123
MsaG010876 AT3G27810.2 47.414 116 46 2 45 145 4 119 1.32e-34 120
MsaG010876 AT2G26950.1 48.039 102 53 0 9 110 13 114 1.04e-33 123
MsaG010876 AT5G49620.2 51.282 117 43 1 12 114 26 142 6.00e-33 120
MsaG010876 AT1G66380.1 55.769 104 46 0 12 115 8 111 8.99e-33 114
MsaG010876 AT5G40350.2 64.384 73 26 0 45 117 5 77 9.72e-33 115
MsaG010876 AT1G56650.1 44.805 154 71 3 12 155 8 157 2.47e-32 116
MsaG010876 AT5G14750.3 68.116 69 22 0 48 116 18 86 4.80e-31 111
MsaG010876 AT1G66390.1 53.774 106 49 0 10 115 6 111 1.23e-30 112
MsaG010876 AT5G35550.2 66.216 74 25 0 43 116 48 121 2.24e-30 112
MsaG010876 AT5G40360.1 39.189 148 80 4 9 154 153 292 5.11e-30 113
MsaG010876 AT3G46130.3 62.500 72 27 0 44 115 9 80 2.22e-29 108
MsaG010876 AT5G59780.2 63.380 71 26 0 45 115 20 90 4.23e-29 107
MsaG010876 AT3G46130.4 63.380 71 26 0 45 115 20 90 5.97e-29 107
MsaG010876 AT3G12820.2 64.286 70 25 0 48 117 2 71 1.24e-28 105
MsaG010876 AT3G47600.2 62.500 72 27 0 45 116 39 110 2.60e-28 107
MsaG010876 AT3G50060.1 38.415 164 86 3 14 176 6 155 3.42e-28 107
MsaG010876 AT3G27785.1 35.948 153 84 4 9 156 184 327 4.74e-28 108
MsaG010876 AT4G18770.1 44.954 109 57 2 9 116 212 318 2.55e-27 106
MsaG010876 AT3G53200.2 54.545 77 35 0 45 121 9 85 2.66e-27 102
MsaG010876 AT5G11050.1 45.631 103 53 2 14 115 105 205 3.69e-27 106
MsaG010876 AT5G02320.3 47.115 104 52 2 14 116 67 168 9.82e-27 105
MsaG010876 AT5G58850.1 44.660 103 54 2 14 115 105 205 1.17e-26 105
MsaG010876 AT5G02320.1 47.115 104 52 2 14 116 127 228 1.21e-26 105
MsaG010876 AT5G02320.2 47.115 104 52 2 14 116 127 228 1.21e-26 105
MsaG010876 AT5G67300.1 48.148 108 53 2 14 120 6 111 1.49e-26 102
MsaG010876 AT5G11510.3 46.729 107 54 2 14 119 81 185 2.83e-26 105
MsaG010876 AT5G11510.1 46.729 107 54 2 14 119 81 185 2.83e-26 105
MsaG010876 AT5G11510.4 46.729 107 54 2 14 119 81 185 2.83e-26 105
MsaG010876 AT5G11510.2 46.729 107 54 2 14 119 81 185 2.89e-26 105
MsaG010876 AT5G11510.5 46.729 107 54 2 14 119 81 185 3.16e-26 105
MsaG010876 AT1G69560.2 38.037 163 79 6 2 163 114 255 4.94e-26 102
MsaG010876 AT1G69560.1 38.037 163 79 6 2 163 98 239 5.09e-26 102
MsaG010876 AT3G09370.2 47.573 103 51 2 14 115 135 235 7.82e-26 103
MsaG010876 AT3G09370.1 47.573 103 51 2 14 115 130 230 8.61e-26 103
MsaG010876 AT1G22640.3 55.435 92 34 1 58 149 1 85 1.07e-25 98.2
MsaG010876 AT4G32730.1 45.794 107 55 2 14 119 87 191 1.11e-25 103
MsaG010876 AT3G09370.3 47.573 103 51 2 14 115 143 243 1.11e-25 102
MsaG010876 AT4G32730.5 45.794 107 55 2 14 119 87 191 1.11e-25 103
MsaG010876 AT4G32730.4 45.794 107 55 2 14 119 87 191 1.11e-25 103
MsaG010876 AT4G32730.3 45.794 107 55 2 14 119 87 191 1.11e-25 103
MsaG010876 AT4G32730.2 45.794 107 55 2 14 119 87 191 1.11e-25 103
MsaG010876 AT3G09230.1 45.902 122 60 4 1 121 43 159 3.02e-25 100
MsaG010876 AT2G39880.1 49.074 108 51 3 9 115 46 150 6.39e-25 99.8
MsaG010876 AT1G26780.1 44.860 107 56 2 14 119 98 202 7.73e-25 97.8
MsaG010876 AT3G55730.1 50.000 108 50 3 9 115 52 156 1.51e-24 99.0
MsaG010876 AT4G37260.1 46.789 109 54 3 8 115 8 113 2.07e-24 97.4
MsaG010876 AT1G26780.2 44.860 107 56 2 14 119 98 202 2.10e-24 98.2
MsaG010876 AT1G17950.1 43.220 118 54 3 14 120 5 120 2.69e-24 95.9
MsaG010876 AT2G23290.1 47.573 103 51 2 14 115 13 113 6.50e-24 95.9
MsaG010876 AT1G73410.1 46.602 103 52 2 14 115 6 106 1.18e-23 94.0
MsaG010876 AT1G73410.2 46.602 103 52 2 14 115 6 106 1.33e-23 92.8
MsaG010876 AT1G18960.1 43.860 114 54 5 5 116 4 109 2.04e-23 94.7
MsaG010876 AT1G66380.3 58.442 77 32 0 39 115 2 78 2.04e-23 89.7
MsaG010876 AT4G33450.1 40.769 130 72 4 2 129 6 132 2.99e-23 93.2
MsaG010876 AT5G14750.4 62.712 59 22 0 58 116 1 59 5.63e-22 87.0
MsaG010876 AT5G14750.2 62.712 59 22 0 58 116 1 59 5.63e-22 87.0
MsaG010876 AT3G23250.2 57.576 66 26 1 58 123 1 64 2.74e-21 87.4
MsaG010876 AT2G25230.1 38.318 107 63 2 9 114 21 125 2.79e-21 87.4
MsaG010876 AT1G71030.2 52.703 74 35 0 51 124 5 78 5.44e-21 85.5
MsaG010876 AT3G29020.1 40.385 104 59 2 14 116 65 166 6.15e-21 86.7
MsaG010876 AT1G71030.1 50.617 81 39 1 44 124 13 92 6.96e-21 85.5
MsaG010876 AT5G17800.1 40.741 108 63 1 1 108 80 186 1.01e-20 87.4
MsaG010876 AT3G29020.2 40.385 104 59 2 14 116 67 168 1.17e-20 87.0
MsaG010876 AT1G66380.2 52.500 80 38 0 10 89 6 85 3.77e-20 81.3
MsaG010876 AT2G02820.3 40.708 113 65 2 4 115 19 130 5.37e-20 85.9
MsaG010876 AT4G00540.2 41.284 109 58 3 12 116 101 207 5.52e-20 86.3
MsaG010876 AT4G00540.1 41.284 109 58 3 12 116 99 205 6.88e-20 86.3
MsaG010876 AT2G02820.1 40.708 113 65 2 4 115 19 130 7.62e-20 86.3
MsaG010876 AT2G02820.2 40.708 113 65 2 4 115 19 130 1.05e-19 85.9
MsaG010876 AT1G14350.2 42.424 99 56 1 17 115 28 125 1.43e-18 82.4
MsaG010876 AT1G14350.1 42.424 99 56 1 17 115 28 125 1.43e-18 82.4
MsaG010876 AT5G40430.1 36.449 107 64 3 9 114 49 152 1.45e-17 78.2
MsaG010876 AT2G37630.1 39.394 99 58 1 13 109 3 101 1.62e-16 76.3
MsaG010876 AT5G39700.1 29.577 142 94 3 4 145 46 181 1.72e-15 71.2
MsaG010876 AT5G59780.1 56.522 46 20 0 70 115 1 46 5.09e-14 67.0
MsaG010876 AT3G46130.2 56.522 46 20 0 70 115 1 46 8.58e-14 66.6
MsaG010876 AT1G14350.3 50.000 60 30 0 56 115 23 82 1.81e-13 67.8
MsaG010876 AT1G14350.4 50.000 60 30 0 56 115 23 82 1.81e-13 67.8
MsaG010876 AT4G25560.2 59.574 47 19 0 71 117 3 49 2.73e-13 65.9
MsaG010876 AT1G74650.3 57.778 45 19 0 77 121 1 45 8.66e-12 62.4
MsaG010876 AT3G18100.3 30.252 119 72 3 6 119 485 597 3.07e-11 61.6
MsaG010876 AT3G18100.1 30.252 119 72 3 6 119 533 645 3.54e-11 61.6
MsaG010876 AT3G28910.2 60.000 40 16 0 77 116 1 40 3.70e-11 60.5
MsaG010876 AT3G18100.2 30.252 119 72 3 6 119 320 432 4.39e-11 61.2
MsaG010876 AT3G18100.4 30.252 119 72 3 6 119 372 484 5.93e-11 60.8

Find 38 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAACTTCATACTATTCT+AGG 0.151488 2:-78791468 MsaT010876.1:CDS
CTTTCAACAGAAGCATTTCT+AGG 0.208632 2:+78791173 None:intergenic
ATCAACTACATCACTAATTA+TGG 0.241664 2:-78791627 MsaT010876.1:CDS
CTCTGCAGTCCTGCAAGTTT+AGG 0.266738 2:+78791582 None:intergenic
ATAATGAGGTGAAGAACTTT+TGG 0.303241 2:-78791274 MsaT010876.1:CDS
ACCTCATTATCTGTTCTTCC+TGG 0.311501 2:+78791287 None:intergenic
TTTGATGATCAATACCTTGT+AGG 0.315080 2:+78791048 None:intergenic
ATAGGATTGTCATTAAATAA+AGG 0.329117 2:+78791143 None:intergenic
AAACTTCCACGTTTCAAATC+AGG 0.335974 2:+78791516 None:intergenic
TCTGCAGTCCTGCAAGTTTA+GGG 0.358458 2:+78791583 None:intergenic
GATATTGATGATTGGAGTTA+AGG 0.394816 2:+78791120 None:intergenic
AGCTCTGTCCCTAAACTTGC+AGG 0.405767 2:-78791591 MsaT010876.1:CDS
CTAATTATGGACATGGTTGT+TGG 0.406869 2:-78791614 MsaT010876.1:CDS
GATTGGAGTTGGGATATTGA+TGG 0.413697 2:+78791070 None:intergenic
TAGGATTGTCATTAAATAAA+GGG 0.418843 2:+78791144 None:intergenic
TTCATACTATTCTAGGCAAC+AGG 0.438465 2:-78791461 MsaT010876.1:intron
GGATATTGATGGGAAGGTAT+AGG 0.442246 2:+78791081 None:intergenic
TGATCAATACCTTGTAGGAT+TGG 0.473649 2:+78791053 None:intergenic
AGAAAATGTGGCTAAAGAAG+TGG 0.482058 2:+78791208 None:intergenic
ATTGGAGTTGGGATATTGAT+GGG 0.491224 2:+78791071 None:intergenic
TACCTTGTAGGATTGGAGTT+GGG 0.502222 2:+78791060 None:intergenic
ATACCTTGTAGGATTGGAGT+TGG 0.505314 2:+78791059 None:intergenic
AGAAGGTGAAAAGAGGACTA+TGG 0.507962 2:-78791674 MsaT010876.1:CDS
TGATGATTGGAGTTAAGGAT+AGG 0.512802 2:+78791125 None:intergenic
GAGTTGGGATATTGATGGGA+AGG 0.522153 2:+78791075 None:intergenic
AAAGTGATGATATTGATGAT+TGG 0.543382 2:+78791112 None:intergenic
CAGATAGCAAAGCATTTACC+AGG 0.550164 2:-78791305 MsaT010876.1:CDS
ATAATGAGAGCAGCTTCTTG+TGG 0.553720 2:+78791489 None:intergenic
GAAAATGTGGCTAAAGAAGT+GGG 0.573728 2:+78791209 None:intergenic
TATTGATGGGAAGGTATAGG+TGG 0.579830 2:+78791084 None:intergenic
ATCCCAACTCCAATCCTACA+AGG 0.580405 2:-78791062 MsaT010876.1:intron
AATAAACAGAAGGTGAAAAG+AGG 0.582306 2:-78791681 MsaT010876.1:CDS
ACAGTGAATATCAGAAAATG+TGG 0.592062 2:+78791196 None:intergenic
ACCAGGAAGAACAGATAATG+AGG 0.592167 2:-78791288 MsaT010876.1:CDS
CTTGCAGGACTGCAGAGATG+TGG 0.599628 2:-78791576 MsaT010876.1:CDS
CTCTTGCTGCAATAAACAGA+AGG 0.601662 2:-78791691 MsaT010876.1:CDS
TACATCACTAATTATGGACA+TGG 0.629536 2:-78791621 MsaT010876.1:CDS
TTAAGACCTGATTTGAAACG+TGG 0.631002 2:-78791522 MsaT010876.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 78790783 78791724 78790783 ID=MsaG010876
Chr2 mRNA 78790783 78791724 78790783 ID=MsaT010876.1;Parent=MsaG010876
Chr2 exon 78790783 78790796 78790783 ID=MsaT010876.1.exon3;Parent=MsaT010876.1
Chr2 CDS 78790783 78790796 78790783 ID=cds.MsaT010876.1;Parent=MsaT010876.1
Chr2 exon 78791063 78791334 78791063 ID=MsaT010876.1.exon2;Parent=MsaT010876.1
Chr2 CDS 78791063 78791334 78791063 ID=cds.MsaT010876.1;Parent=MsaT010876.1
Chr2 exon 78791462 78791724 78791462 ID=MsaT010876.1.exon1;Parent=MsaT010876.1
Chr2 CDS 78791462 78791724 78791462 ID=cds.MsaT010876.1;Parent=MsaT010876.1
Gene Sequence

>MsaT010876.1

ATGGGGCATCACTCTTGCTGCAATAAACAGAAGGTGAAAAGAGGACTATGGTCACCAGAAGAAGATGAAAAACTCATCAACTACATCACTAATTATGGACATGGTTGTTGGAGCTCTGTCCCTAAACTTGCAGGACTGCAGAGATGTGGAAAAAGTTGCAGGTTGAGATGGATAAATTATTTAAGACCTGATTTGAAACGTGGAAGTTTTTCTCCACAAGAAGCTGCTCTCATTATTGAACTTCATACTATTCTAGGCAACAGGTGGGCTCAGATAGCAAAGCATTTACCAGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAACTACTTTCACATGATTTTGTTCCCACTTCTTTAGCCACATTTTCTGATATTCACTGTCCTAGAAATGCTTCTGTTGAAAGTTTCTTCCCTTTATTTAATGACAATCCTATCCTTAACTCCAATCATCAATATCATCACTTTGACAACCACCTATACCTTCCCATCAATATCCCAACTCCAATCCTACAAGCAGCAGCACTATGA
Protein sequence

>MsaT010876.1

MGHHSCCNKQKVKRGLWSPEEDEKLINYITNYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHTILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDFVPTSLATFSDIHCPRNASVESFFPLFNDNPILNSNHQYHHFDNHLYLPINIPTPILQAAAL*