AlfalfaGEDB | MsaG010910

M. sativa ssp. caerulea / MsaG010910

KEGG: K09060
GO: GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1901700 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010910	XP_013444711.1	54.403	318	41	6	2	231	43	344	3.23e-87	275

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010910	sp\|Q99142\|TAF1_TOBAC	42.692	260	109	11	2	230	7	257	4.90e-41	144

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010910	tr\|A0A072TNE8\|A0A072TNE8_MEDTR	54.403	318	41	6	2	231	43	344	1.54e-87	275

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TFs/TRs:

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Gene ID	Type	Classification
MsaG010910	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010910	MtrunA17_Chr8g0347741	54.403	318	41	6	2	231	43	344	2.97e-91	275
MsaG010910	MtrunA17_Chr7g0275321	50.781	256	64	6	22	231	106	345	8.21e-62	199
MsaG010910	MtrunA17_Chr8g0369161	58.904	73	28	1	159	231	301	371	1.05e-19	86.7
MsaG010910	MtrunA17_Chr8g0373571	60.526	76	27	2	157	231	251	324	1.67e-19	85.9
MsaG010910	MtrunA17_Chr5g0410531	60.274	73	27	1	159	231	302	372	6.19e-19	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010910	AT2G46270.1	37.539	317	78	10	2	230	38	322	1.87e-40	143
MsaG010910	AT2G46270.3	37.539	317	78	10	2	230	38	322	1.87e-40	143
MsaG010910	AT2G46270.2	35.016	317	63	9	2	230	38	299	8.93e-31	117
MsaG010910	AT2G46270.4	35.016	317	63	9	2	230	38	299	8.93e-31	117
MsaG010910	AT4G01120.1	31.715	309	96	10	2	230	39	312	1.47e-25	102
MsaG010910	AT2G35530.1	36.449	214	106	9	38	231	166	369	2.90e-21	91.7
MsaG010910	AT1G32150.1	57.333	75	28	2	159	231	287	359	9.68e-18	81.6
MsaG010910	AT4G36730.2	54.167	72	31	1	160	231	215	284	8.69e-16	75.5
MsaG010910	AT4G36730.1	54.167	72	31	1	160	231	217	286	9.57e-16	75.5

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Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTACAGCAGGTGAAGA+TGG	0.476285	2:-79292538	None:intergenic
AAGCGATGGCAACACTACAG+GGG	0.742066	2:+79292940	MsaT010910.1:CDS
AATGGAACACCAACAACCAC+TGG	0.585041	2:+79293067	MsaT010910.1:CDS
ACAAGGCTGTGGAACACTGG+TGG	0.593279	2:-79293562	None:intergenic
ACACTGGTGGAAATAGGCGA+AGG	0.605436	2:-79293549	None:intergenic
ACAGGCTGAGGCTGAAGAAT+TGG	0.391234	2:+79294265	MsaT010910.1:intron
ACCAGTGTTCCACAGCCTTG+TGG	0.495543	2:+79293564	MsaT010910.1:CDS
ACCTGCATCCAAGCTTCAGG+AGG	0.636392	2:-79293594	None:intergenic
ACTTCCAGTAATGGAAGCGA+TGG	0.593651	2:+79292926	MsaT010910.1:CDS
AGAGTGAGCTGAAACGTGCG+AGG	0.666784	2:+79293757	MsaT010910.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	79291593	79294409	79291593	ID=MsaG010910
Chr2	mRNA	79291593	79294409	79291593	ID=MsaT010910.1;Parent=MsaG010910
Chr2	exon	79291593	79291595	79291593	ID=MsaT010910.1.exon1;Parent=MsaT010910.1
Chr2	CDS	79291593	79291595	79291593	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79292291	79292351	79292291	ID=MsaT010910.1.exon2;Parent=MsaT010910.1
Chr2	CDS	79292291	79292351	79292291	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79292533	79292552	79292533	ID=MsaT010910.1.exon3;Parent=MsaT010910.1
Chr2	CDS	79292533	79292552	79292533	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79292660	79292737	79292660	ID=MsaT010910.1.exon4;Parent=MsaT010910.1
Chr2	CDS	79292660	79292737	79292660	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79292926	79292961	79292926	ID=MsaT010910.1.exon5;Parent=MsaT010910.1
Chr2	CDS	79292926	79292961	79292926	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79293064	79293129	79293064	ID=MsaT010910.1.exon6;Parent=MsaT010910.1
Chr2	CDS	79293064	79293129	79293064	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79293396	79293614	79293396	ID=MsaT010910.1.exon7;Parent=MsaT010910.1
Chr2	CDS	79293396	79293614	79293396	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79293753	79293836	79293753	ID=MsaT010910.1.exon8;Parent=MsaT010910.1
Chr2	CDS	79293753	79293836	79293753	ID=cds.MsaT010910.1;Parent=MsaT010910.1
Chr2	exon	79294269	79294409	79294269	ID=MsaT010910.1.exon9;Parent=MsaT010910.1
Chr2	CDS	79294269	79294409	79294269	ID=cds.MsaT010910.1;Parent=MsaT010910.1

Gene Sequence

>MsaT010910.1

ATGGCATATTATGGGCAAAGAGTCAACATTCCACCACCATATTTCAACTCAGCTGCTGCTCCTGGAATTCCATCTTCACCTGCTGCTGGAACTCCTACAAGCATAGAGACACCAACTAAATCATCTGGAAACACTGATCAGGGTTTAATCAAAAAATTGAAAACTTCCAGTAATGGAAGCGATGGCAACACTACAGGGACCAATGGAACACCAACAACCACTGGTATGATAAACAATACTAGTTATTCTGGATTACAAATATACATGGAGAAGGGAAAACTGAGATGCAAGATAATCAAGTTTCCAAAGAGACTGCCGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAATGGTTGGACCTCTACTTTCTTCAGGTATGACCACATCACTGGAACTGAGGAACCCTTCGCCTATTTCCACCAGTGTTCCACAGCCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGAATGAGAGTGAGCTGAAACGTGCGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGATCCAGGCTTAGGCTTAGGAAGCAAGCTGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCCGAGAATTTGGTGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCTGAGAAGCTGAAGATTGAAAATGCTACATTAAAGATAATGCACACATAA

Protein sequence

>MsaT010910.1

MAYYGQRVNIPPPYFNSAAAPGIPSSPAAGTPTSIETPTKSSGNTDQGLIKKLKTSSNGSDGNTTGTNGTPTTTGMINNTSYSGLQIYMEKGKLRCKIIKFPKRLPLPKRRCQLSQPVLQKMVGPLLSSGMTTSLELRNPSPISTSVPQPCGVLPPEAWMQNESELKRARRKQSNRESARRSRLRLRKQAEAEELARRVDALTAENLVLKSEMNELAENSEKLKIENATLKIMHT*