AlfalfaGEDB | MsaG010931

M. sativa ssp. caerulea / MsaG010931

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000026 GO:2000028 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010931	XP_003597642.1	92.982	399	21	1	1	399	1	392	0.0	718

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010931	sp\|Q8S3D2\|BH087_ARATH	54.639	291	118	8	105	391	86	366	3.81e-82	259

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010931	tr\|G7IHW4\|G7IHW4_MEDTR	92.982	399	21	1	1	399	1	392	0.0	718

TFs/TRs:

Gene ID	Type	Classification
MsaG010931	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004525	MsaG010931	0.803001	7.221405e-49	1.045272e-46
MsaG006832	MsaG010931	0.820514	1.155697e-52	2.576560e-50
MsaG007176	MsaG010931	0.847455	2.159761e-59	1.073916e-56
MsaG009580	MsaG010931	0.844199	1.638975e-58	7.315174e-56
MsaG010931	MsaG010958	0.908806	2.746183e-81	2.402079e-77
MsaG010931	MsaG012185	0.819921	1.577629e-52	3.462427e-50
MsaG010931	MsaG017522	0.823238	2.722913e-53	6.528990e-51
MsaG010931	MsaG017881	0.801622	1.383848e-48	1.940916e-46
MsaG010931	MsaG017988	0.840820	1.278770e-57	5.122216e-55
MsaG010931	MsaG019271	0.808117	6.169779e-50	1.006879e-47
MsaG010931	MsaG023726	0.839747	2.431045e-57	9.415075e-55
MsaG010931	MsaG025778	0.812841	5.955017e-51	1.090458e-48
MsaG010931	MsaG029094	0.800855	1.983620e-48	2.734197e-46
MsaG010931	MsaG029836	0.822706	3.619225e-53	8.554136e-51
MsaG010931	MsaG035427	0.803581	5.484047e-49	8.044917e-47
MsaG010931	MsaG037003	0.800485	2.357263e-48	3.222271e-46
MsaG010931	MsaG019850	0.813172	5.043008e-51	9.311169e-49
MsaG010931	MsaG041261	0.814687	2.345638e-51	4.498585e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010931	MtrunA17_Chr2g0330641	92.982	399	21	1	1	399	1	392	0.0	718
MsaG010931	MtrunA17_Chr8g0341421	51.087	460	111	22	1	388	1	418	5.15e-105	317
MsaG010931	MtrunA17_Chr3g0134001	52.000	125	55	3	268	392	143	262	8.81e-35	129
MsaG010931	MtrunA17_Chr8g0384141	63.043	92	33	1	269	360	87	177	4.39e-34	127
MsaG010931	MtrunA17_Chr5g0402161	61.682	107	39	2	258	363	98	203	1.67e-28	112
MsaG010931	MtrunA17_Chr8g0375121	55.970	134	42	4	243	363	69	198	2.83e-28	111
MsaG010931	MtrunA17_Chr7g0243041	52.941	68	32	0	303	370	32	99	7.72e-20	85.5
MsaG010931	MtrunA17_Chr1g0152651	62.963	54	20	0	306	359	283	336	7.37e-17	81.3
MsaG010931	MtrunA17_Chr5g0435021	58.929	56	23	0	304	359	225	280	3.86e-16	78.6
MsaG010931	MtrunA17_Chr1g0207301	49.254	67	34	0	293	359	284	350	9.84e-16	78.2
MsaG010931	MtrunA17_Chr5g0393721	55.357	56	25	0	304	359	231	286	2.07e-15	76.6
MsaG010931	MtrunA17_Chr1g0207311	55.357	56	25	0	304	359	203	258	3.41e-15	75.5
MsaG010931	MtrunA17_Chr3g0134741	50.794	63	31	0	297	359	229	291	8.88e-15	74.7
MsaG010931	MtrunA17_Chr1g0179061	51.562	64	31	0	297	360	170	233	1.11e-14	73.6
MsaG010931	MtrunA17_Chr2g0311101	58.491	53	22	0	308	360	180	232	1.22e-13	71.2
MsaG010931	MtrunA17_Chr4g0074161	55.357	56	25	0	304	359	213	268	1.94e-13	71.2
MsaG010931	MtrunA17_Chr1g0190731	55.357	56	25	0	304	359	200	255	5.66e-13	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010931	AT3G21330.1	54.639	291	118	8	105	391	86	366	3.88e-83	259
MsaG010931	AT4G00120.1	61.798	89	33	1	272	360	88	175	1.97e-29	113
MsaG010931	AT3G50330.1	52.941	136	60	4	227	360	49	182	6.30e-26	105
MsaG010931	AT5G67060.2	64.130	92	32	1	269	360	83	173	9.40e-26	104
MsaG010931	AT5G67060.1	64.130	92	32	1	269	360	95	185	1.04e-25	104
MsaG010931	AT5G09750.1	62.366	93	34	1	269	361	92	183	4.67e-24	99.8
MsaG010931	AT5G01305.1	57.353	68	29	0	295	362	35	102	1.94e-20	88.2
MsaG010931	AT1G66470.1	39.450	109	64	1	251	359	151	257	6.02e-17	81.3
MsaG010931	AT5G37800.1	46.067	89	40	1	279	359	175	263	1.14e-16	80.5
MsaG010931	AT5G43175.1	46.269	67	36	0	293	359	128	194	3.69e-16	77.4
MsaG010931	AT4G33880.1	53.226	62	29	0	298	359	267	328	5.60e-16	79.0
MsaG010931	AT2G14760.1	53.226	62	29	0	298	359	238	299	8.55e-16	78.2
MsaG010931	AT1G27740.1	50.000	62	31	0	298	359	168	229	8.19e-15	74.3
MsaG010931	AT4G30980.1	54.545	66	29	1	295	359	127	192	1.20e-14	74.7
MsaG010931	AT4G30980.2	54.545	66	29	1	295	359	175	240	1.79e-14	74.7
MsaG010931	AT2G24260.2	57.143	56	24	0	304	359	42	97	1.88e-14	73.2
MsaG010931	AT2G24260.1	57.143	56	24	0	304	359	145	200	3.40e-14	73.6
MsaG010931	AT5G58010.1	49.275	69	34	1	292	359	93	161	7.35e-13	69.3
MsaG010931	AT2G14760.3	44.000	75	29	1	298	359	238	312	1.24e-12	68.9

Find 84 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCTTCTTCTTCTACTGAATT+TGG	0.150846	2:-79493391	MsaT010931.1:CDS
GAATATTGGATGTTGAAATT+AGG	0.176056	2:+79492857	None:intergenic
CATCTTGGTTTCTTTGACTT+TGG	0.197671	2:+79493343	None:intergenic
ATTTAGGCCGGTGACGAATT+TGG	0.200299	2:-79493182	MsaT010931.1:CDS
GATTTCAATCATGGGAATAT+TGG	0.228711	2:+79492843	None:intergenic
GACAATGAAACTGATGAATT+TGG	0.244336	2:+79493277	None:intergenic
AATATTGGATGTTGAAATTA+GGG	0.257470	2:+79492858	None:intergenic
AACTTTAGTGCAGTTTCTTC+TGG	0.287864	2:-79493598	MsaT010931.1:CDS
CCAAGGTTCATTCCACAAAA+AGG	0.291280	2:-79493462	MsaT010931.1:CDS
TCCCAACTGTTTCCAGCTCC+TGG	0.305187	2:+79493868	None:intergenic
TTCATTTGTGCTATTGCCTC+TGG	0.321358	2:+79493229	None:intergenic
TTTAGGCCGGTGACGAATTT+GGG	0.332170	2:-79493181	MsaT010931.1:CDS
AAGTGATGGAAAAGCCTAAA+AGG	0.336703	2:-79493153	MsaT010931.1:CDS
AAGGAGAAGGCTATGTTTGC+AGG	0.348753	2:+79492905	None:intergenic
TGCCTAGCCGCCACAGTTTG+TGG	0.350175	2:+79493106	None:intergenic
CTTGGTTTCTTTGACTTTGG+TGG	0.356806	2:+79493346	None:intergenic
GATGATAATGATTTCAATCA+TGG	0.362071	2:+79492834	None:intergenic
TGTGCTATTGCCTCTGGATC+AGG	0.366599	2:+79493235	None:intergenic
TATATAGAGCTGCAGCATTT+AGG	0.373879	2:-79493198	MsaT010931.1:CDS
CCAATCATACCCTTCACTTT+CGG	0.383334	2:-79493830	MsaT010931.1:CDS
TACATATGGATTGTCTTAGC+TGG	0.402802	2:-79494029	None:intergenic
AAACTGATGAATTTGGTTGC+TGG	0.410865	2:+79493284	None:intergenic
GCCGGTGACGAATTTGGGTT+TGG	0.412280	2:-79493176	MsaT010931.1:CDS
GTCTTGCAGAAGATTGTTCC+TGG	0.420469	2:-79493052	MsaT010931.1:CDS
TGCATTCAAGGAACTGGATC+AGG	0.432172	2:-79493533	MsaT010931.1:CDS
CCGAAAGTGAAGGGTATGAT+TGG	0.436711	2:+79493830	None:intergenic
GCAGTATGCATTCAAGGAAC+TGG	0.437343	2:-79493539	MsaT010931.1:CDS
CATTGATGCAGTGTCCATCT+TGG	0.445318	2:+79493024	None:intergenic
TCATGGAAATTCCATCATCT+TGG	0.445903	2:+79493653	None:intergenic
TACTCTTGCTGATTGGTTGG+TGG	0.446984	2:+79493755	None:intergenic
CTGTGGCGGCTAGGCAAAGA+AGG	0.454660	2:-79493099	MsaT010931.1:CDS
GGACACTTATTATCCCATCT+TGG	0.463511	2:+79493328	None:intergenic
TAGAGCACAAGTCAAAGAAC+TGG	0.468462	2:-79492969	MsaT010931.1:CDS
ACTAATTCTGTCCAAGATGA+TGG	0.470459	2:-79493664	MsaT010931.1:CDS
TTACCTTGATCTGAGGAAGC+TGG	0.471387	2:+79493499	None:intergenic
GTAGTAGTACTCTTGCTGAT+TGG	0.471486	2:+79493748	None:intergenic
GTCAAAGAACTGGAGAATCT+AGG	0.474273	2:-79492959	MsaT010931.1:CDS
GGTTGAGTGTTCCACAAGAT+TGG	0.479415	2:+79493976	None:intergenic
GGACATGCAGTATGCATTCA+AGG	0.489351	2:-79493545	MsaT010931.1:CDS
CATGGGAATTGACTGGTTGA+AGG	0.490980	2:+79492886	None:intergenic
TGGTGGGCCATGTTGAAATC+AGG	0.494073	2:+79493772	None:intergenic
CAGAAGGTTCAACCAGGAGC+TGG	0.494279	2:-79493880	MsaT010931.1:CDS
ACTCTTGCTGATTGGTTGGT+GGG	0.498014	2:+79493756	None:intergenic
GTTCCACAAGATTGGTATGT+TGG	0.503170	2:+79493984	None:intergenic
ACCAGGAGCTGGAAACAGTT+GGG	0.515648	2:-79493869	MsaT010931.1:CDS
TAGTACTCTTGCTGATTGGT+TGG	0.516116	2:+79493752	None:intergenic
ACATATGGATTGTCTTAGCT+GGG	0.522229	2:-79494028	None:intergenic
GAATTTGGGTTTGGAAGTGA+TGG	0.527963	2:-79493167	MsaT010931.1:CDS
TCTCCAGCTTCCTCAGATCA+AGG	0.534533	2:-79493502	MsaT010931.1:CDS
TTACCAACATACCAATCTTG+TGG	0.535200	2:-79493987	MsaT010931.1:CDS
AACCAGGAGCTGGAAACAGT+TGG	0.539885	2:-79493870	MsaT010931.1:CDS
AGAGGCAATAGCACAAATGA+AGG	0.541238	2:-79493227	MsaT010931.1:CDS
CTCTGGATCAGGCTCTTCAA+AGG	0.548876	2:+79493246	None:intergenic
ATGATAATGATTTCAATCAT+GGG	0.556089	2:+79492835	None:intergenic
AGATGGGATAATAAGTGTCC+TGG	0.557228	2:-79493325	MsaT010931.1:CDS
GTGTCCATCTTGGTTCCACC+AGG	0.564056	2:+79493034	None:intergenic
TAAAATCATTGATAATTCCA+AGG	0.564539	2:-79493479	MsaT010931.1:CDS
TAGTCTCTTGCAAAGTCTTG+TGG	0.568681	2:+79493955	None:intergenic
TGTTCCTGGTGGAACCAAGA+TGG	0.571863	2:-79493038	MsaT010931.1:CDS
TCGATATTGACCGAAAGTGA+AGG	0.573714	2:+79493820	None:intergenic
GAAGGGAAAGAATAAGTGAG+AGG	0.579170	2:-79493081	MsaT010931.1:CDS
TCCAAACCCAAATTCGTCAC+CGG	0.582453	2:+79493175	None:intergenic
ATCCACAAACTGTGGCGGCT+AGG	0.587768	2:-79493108	MsaT010931.1:CDS
AATTGACTGGTTGAAGGAGA+AGG	0.590555	2:+79492892	None:intergenic
CAAAGTCAAAGAAACCAAGA+TGG	0.591227	2:-79493342	MsaT010931.1:CDS
CGATATTGACCGAAAGTGAA+GGG	0.597835	2:+79493821	None:intergenic
TAGAGCTGCAGCATTTAGGC+CGG	0.600006	2:-79493194	MsaT010931.1:CDS
AAAGTCAAAGAAACCAAGAT+GGG	0.607623	2:-79493341	MsaT010931.1:CDS
CTTTGAAGAGCCTGATCCAG+AGG	0.622335	2:-79493245	MsaT010931.1:CDS
GCCATGTTGAAATCAGGCAG+TGG	0.628594	2:+79493778	None:intergenic
TGAGTAGTAATGCTGAAGCA+AGG	0.639766	2:+79493418	None:intergenic
TCAAATGCAAGAAATGCAGA+AGG	0.642036	2:-79493896	MsaT010931.1:CDS
AAATTGATATTTGATGAACC+AGG	0.643576	2:+79493307	None:intergenic
AGTGGCACATAATTGTTATG+TGG	0.644546	2:+79493796	None:intergenic
TTGCAGAAGATTGTTCCTGG+TGG	0.647074	2:-79493049	MsaT010931.1:CDS
ATCAAATGATCCACAAACTG+TGG	0.655439	2:-79493116	MsaT010931.1:CDS
GAAATGCAGAAGGTTCAACC+AGG	0.659735	2:-79493886	MsaT010931.1:CDS
GTCAGTGTTACTGATAGTAG+TGG	0.661499	2:+79493687	None:intergenic
GCGTACAAATGCTAGAAACA+AGG	0.665015	2:-79493566	MsaT010931.1:CDS
AAATGATCCACAAACTGTGG+CGG	0.666151	2:-79493113	MsaT010931.1:CDS
TGTGGCGGCTAGGCAAAGAA+GGG	0.669512	2:-79493098	MsaT010931.1:CDS
GAGAAGGCTATGTTTGCAGG+AGG	0.669932	2:+79492908	None:intergenic
GCCACTGCCTGATTTCAACA+TGG	0.684690	2:-79493779	MsaT010931.1:CDS
CTTGTGCTCTAAGAAACTTG+AGG	0.702293	2:+79492981	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	79492847	79494046	79492847	ID=MsaG010931
Chr2	mRNA	79492847	79494046	79492847	ID=MsaT010931.1;Parent=MsaG010931
Chr2	exon	79492847	79494046	79492847	ID=MsaT010931.1.exon1;Parent=MsaT010931.1
Chr2	CDS	79492847	79494046	79492847	ID=cds.MsaT010931.1;Parent=MsaT010931.1

Gene Sequence

>MsaT010931.1

ATGGATTGTCTTAGCTGGGATGATGATACACAACTTGTTACCAACATACCAATCTTGTGGAACACTCAACCACAAGACTTTGCAAGAGACTATTCAATGTCCAACCCAAGTTCAAGTGTTTTTAACTATCAAATGCAAGAAATGCAGAAGGTTCAACCAGGAGCTGGAAACAGTTGGGAAGAAACTTTAATATTCCAATCATACCCTTCACTTTCGGTCAATATCGATCCACATAACAATTATGTGCCACTGCCTGATTTCAACATGGCCCACCAACCAATCAGCAAGAGTACTACTACATGCTCACTTGAATCATCACTTGATTGTTTGCTTTCAGCCACTACTATCAGTAACACTGACACTAATTCTGTCCAAGATGATGGAATTTCCATGATTTTTTCTGACTGCAAAAACAGAAACTTATGGAACTTTAGTGCAGTTTCTTCTGGTGAATCTGAGCGTACAAATGCTAGAAACAAGGACATGCAGTATGCATTCAAGGAACTGGATCAGGAAACAGTATCTCCAGCTTCCTCAGATCAAGGTAAAATCATTGATAATTCCAAGGTTCATTCCACAAAAAGGACTAATATTGATCAATATGATCCTTGCTTCAGCATTACTACTCAGAATTCTTCTTCTTCTACTGAATTTGGTTTCAAGCTTATCTCAGAGAAACCACCAAAGTCAAAGAAACCAAGATGGGATAATAAGTGTCCTGGTTCATCAAATATCAATTTCCAGCAACCAAATTCATCAGTTTCATTGTCAAATTCATCCTTTGAAGAGCCTGATCCAGAGGCAATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCATTTAGGCCGGTGACGAATTTGGGTTTGGAAGTGATGGAAAAGCCTAAAAGGAAGAATGTTAAGATATCAAATGATCCACAAACTGTGGCGGCTAGGCAAAGAAGGGAAAGAATAAGTGAGAGGATTAGAGTCTTGCAGAAGATTGTTCCTGGTGGAACCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCTAATTACCTCAAGTTTCTTAGAGCACAAGTCAAAGAACTGGAGAATCTAGGAAACAAGATTGATACAATGAATAATTGTCCTCCTGCAAACATAGCCTTCTCCTTCAACCAGTCAATTCCCATGCAAAACCCTAATTTCAACATCCAATATTCCCATGATTGA

Protein sequence

>MsaT010931.1

MDCLSWDDDTQLVTNIPILWNTQPQDFARDYSMSNPSSSVFNYQMQEMQKVQPGAGNSWEETLIFQSYPSLSVNIDPHNNYVPLPDFNMAHQPISKSTTTCSLESSLDCLLSATTISNTDTNSVQDDGISMIFSDCKNRNLWNFSAVSSGESERTNARNKDMQYAFKELDQETVSPASSDQGKIIDNSKVHSTKRTNIDQYDPCFSITTQNSSSSTEFGFKLISEKPPKSKKPRWDNKCPGSSNINFQQPNSSVSLSNSSFEEPDPEAIAQMKEMIYRAAAFRPVTNLGLEVMEKPKRKNVKISNDPQTVAARQRRERISERIRVLQKIVPGGTKMDTASMLDEAANYLKFLRAQVKELENLGNKIDTMNNCPPANIAFSFNQSIPMQNPNFNIQYSHD*