AlfalfaGEDB | MsaG010947

M. sativa ssp. caerulea / MsaG010947

KEGG: K09419
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00447.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010947	RHN76328.1	91.477	352	28	1	1	352	1	350	0.0	660

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010947	sp\|Q94BZ5\|HSFA5_ARATH	50.515	291	122	3	80	352	24	310	3.74e-84	266

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010947	tr\|A0A396JJ32\|A0A396JJ32_MEDTR	91.477	352	28	1	1	352	1	350	0.0	660

TFs/TRs:

Gene ID	Type	Classification
MsaG010947	TF	HSF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002814	MsaG010947	0.801031	1.826470e-48	2.527604e-46
MsaG006943	MsaG010947	0.800330	2.535129e-48	3.453214e-46
MsaG010947	MsaG012203	0.805013	2.768610e-49	4.198718e-47
MsaG010947	MsaG014483	0.802640	8.565066e-49	1.229561e-46
MsaG010947	MsaG015090	0.801551	1.431153e-48	2.004005e-46
MsaG010947	MsaG038313	0.806334	1.466457e-49	2.293885e-47
MsaG010947	MsaG040381	0.810453	1.957742e-50	3.380491e-48
MsaG010947	MsaG044623	0.809076	3.859079e-50	6.444931e-48
MsaG010947	MsaG009149	0.800248	2.634065e-48	3.581283e-46
MsaG010947	MsaG016146	0.810904	1.565445e-50	2.732906e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010947	MtrunA17_Chr2g0330821	91.477	352	28	1	1	352	1	350	0.0	660
MsaG010947	MtrunA17_Chr8g0378061	66.906	278	72	3	80	340	23	297	2.25e-122	361
MsaG010947	MtrunA17_Chr6g0467041	54.985	331	109	6	60	353	1	328	3.72e-112	330
MsaG010947	MtrunA17_Chr2g0330841	67.511	237	57	3	123	341	24	258	6.06e-97	293
MsaG010947	MtrunA17_Chr5g0410881	48.990	198	90	1	67	253	20	217	2.32e-57	194
MsaG010947	MtrunA17_Chr8g0379701	47.716	197	91	2	60	252	1	189	2.62e-51	176
MsaG010947	MtrunA17_Chr4g0039891	45.946	185	90	1	79	253	12	196	1.74e-47	167
MsaG010947	MtrunA17_Chr1g0204741	43.684	190	98	2	73	256	34	220	4.68e-47	162
MsaG010947	MtrunA17_Chr1g0185131	41.799	189	103	1	65	253	18	199	4.68e-44	155
MsaG010947	MtrunA17_Chr4g0071051	42.632	190	104	3	73	261	95	280	3.35e-43	155
MsaG010947	MtrunA17_Chr7g0260331	39.545	220	126	1	44	256	14	233	3.39e-43	153
MsaG010947	MtrunA17_Chr3g0135831	40.625	192	110	1	74	261	41	232	1.59e-42	152
MsaG010947	MtrunA17_Chr8g0392001	45.455	187	91	4	78	253	21	207	7.82e-39	142
MsaG010947	MtrunA17_Chr6g0485571	38.191	199	95	2	78	262	10	194	2.99e-36	134
MsaG010947	MtrunA17_Chr2g0284481	37.143	210	111	5	60	258	2	201	2.69e-35	132
MsaG010947	MtrunA17_Chr5g0402291	56.731	104	45	0	76	179	6	109	2.14e-34	128
MsaG010947	MtrunA17_Chr5g0397881	54.808	104	47	0	67	170	12	115	3.97e-34	129
MsaG010947	MtrunA17_Chr3g0134031	63.830	94	34	0	77	170	22	115	5.13e-34	129
MsaG010947	MtrunA17_Chr5g0441531	55.882	102	45	0	69	170	15	116	5.60e-32	120
MsaG010947	MtrunA17_Chr1g0203601	54.167	96	44	0	77	172	16	111	1.61e-31	120
MsaG010947	MtrunA17_Chr6g0472421	53.191	94	44	0	77	170	31	124	4.56e-30	117
MsaG010947	MtrunA17_Chr7g0257331	51.064	94	46	0	77	170	20	113	5.03e-29	112
MsaG010947	MtrunA17_Chr8g0375041	52.688	93	44	0	78	170	8	100	1.64e-27	108
MsaG010947	MtrunA17_Chr4g0047421	51.020	98	44	1	77	170	31	128	4.76e-27	106
MsaG010947	MtrunA17_Chr1g0179321	61.667	60	23	0	79	138	49	108	7.52e-22	89.4
MsaG010947	MtrunA17_Chr4g0023771	60.656	61	23	1	79	138	15	75	6.82e-19	81.3
MsaG010947	MtrunA17_Chr2g0330871	84.444	45	7	0	1	45	313	357	1.23e-16	80.9
MsaG010947	MtrunA17_Chr6g0470901	51.648	91	35	3	253	340	38	122	6.95e-16	74.3
MsaG010947	MtrunA17_Chr1g0179311	32.283	127	84	1	140	264	15	141	9.92e-12	65.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG010947	AT4G13980.1	50.515	291	122	3	80	352	24	310	3.80e-85	266
MsaG010947	AT1G32330.2	49.057	212	89	3	55	253	19	224	4.30e-53	182
MsaG010947	AT1G32330.1	49.057	212	89	3	55	253	19	224	5.87e-53	182
MsaG010947	AT4G17750.1	45.894	207	94	1	65	253	38	244	1.11e-51	179
MsaG010947	AT5G16820.1	47.059	187	90	1	79	256	27	213	2.55e-49	172
MsaG010947	AT5G16820.2	47.059	187	90	1	79	256	27	213	2.55e-49	172
MsaG010947	AT3G02990.1	48.387	186	86	2	79	255	23	207	1.62e-48	170
MsaG010947	AT2G26150.1	41.485	229	122	4	73	290	38	265	3.27e-47	164
MsaG010947	AT2G26150.4	41.485	229	122	4	73	290	38	265	3.27e-47	164
MsaG010947	AT3G22830.1	41.237	194	103	1	74	256	56	249	1.18e-45	161
MsaG010947	AT5G43840.1	43.085	188	96	2	77	263	17	194	6.96e-45	156
MsaG010947	AT5G03720.2	43.316	187	103	2	74	257	49	235	7.05e-44	157
MsaG010947	AT5G03720.1	43.316	187	103	2	74	257	49	235	7.05e-44	157
MsaG010947	AT3G51910.1	41.848	184	96	1	73	256	23	195	1.35e-43	152
MsaG010947	AT4G18880.1	49.721	179	85	1	79	252	15	193	6.85e-42	151
MsaG010947	AT3G63350.1	38.500	200	123	0	57	256	6	205	1.27e-41	147
MsaG010947	AT5G45710.3	44.681	188	97	2	72	252	3	190	2.60e-41	148
MsaG010947	AT5G45710.1	44.681	188	97	2	72	252	3	190	2.60e-41	148
MsaG010947	AT1G67970.1	42.541	181	99	2	78	253	18	198	6.41e-39	142
MsaG010947	AT3G24520.1	42.045	176	83	3	78	253	16	172	3.03e-38	140
MsaG010947	AT1G46264.1	53.782	119	45	1	71	179	26	144	1.13e-34	130
MsaG010947	AT5G54070.1	37.363	182	109	1	75	256	67	243	8.48e-34	128
MsaG010947	AT5G62020.1	49.495	99	50	0	77	175	21	119	4.06e-30	117
MsaG010947	AT4G36990.1	50.943	106	52	0	67	172	2	107	6.49e-30	116
MsaG010947	AT2G41690.1	46.154	117	63	0	77	193	38	154	2.60e-29	114
MsaG010947	AT4G11660.1	51.064	94	46	0	77	170	57	150	1.56e-28	114
MsaG010947	AT4G18870.1	43.434	99	52	2	71	166	2	99	8.09e-18	83.2
MsaG010947	AT4G18870.1	40.909	88	52	0	79	166	146	233	3.26e-17	81.6
MsaG010947	AT1G77570.1	37.000	100	60	2	70	166	17	116	2.72e-15	72.8
MsaG010947	AT2G26150.3	33.333	162	96	5	140	290	50	210	9.37e-14	71.2
MsaG010947	AT2G26150.2	33.333	162	96	5	140	290	50	210	9.37e-14	71.2

Find 72 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCTCTAAAGCTTCCCTTTC+TGG	0.004045	2:+79595527	None:intergenic
AAGTTTCAACTGTCATTATT+TGG	0.186856	2:+79595005	None:intergenic
GAAATTGTTGTGTTTGAAAT+AGG	0.280393	2:+79596655	None:intergenic
TCCTACAGTGTATATTCTTC+AGG	0.294189	2:+79595594	None:intergenic
GTTTATTCGAAAATTCTTGA+TGG	0.334012	2:+79595222	None:intergenic
CTACTTTACTTGATCATGTT+AGG	0.345999	2:-79595331	MsaT010947.1:CDS
CCAACAACAGCTTTGTGGTT+TGG	0.357531	2:-79596712	MsaT010947.1:CDS
GGAGAACGTAAGCGAATTCC+AGG	0.364208	2:+79596684	None:intergenic
TCAGATATGAACTTTGTATC+AGG	0.375340	2:-79595173	MsaT010947.1:CDS
AATAGCTGAAGGTGCAGGTC+AGG	0.377621	2:-79597713	MsaT010947.1:CDS
ATTTGGATTTGCTTGATAGT+AGG	0.385790	2:+79595022	None:intergenic
TCCAGAAAGGGAAGCTTTAG+AGG	0.389076	2:-79595528	MsaT010947.1:CDS
TCGATAGATGTGTCATTAGA+AGG	0.393975	2:+79597682	None:intergenic
CGAAGGCCGTCTCTTGTCTC+TGG	0.412614	2:+79596868	None:intergenic
CTTCAGACAAATGTTTCTGC+AGG	0.414385	2:+79595111	None:intergenic
CAATCATTACAATCTCAGTA+TGG	0.432196	2:-79595261	MsaT010947.1:CDS
CTCTACCAACAACAGCTTTG+TGG	0.452629	2:-79596717	MsaT010947.1:CDS
CTCGAGTCCAGGTTATTAAA+CGG	0.459756	2:-79595470	MsaT010947.1:CDS
CGCTGAAAATGAAGGAGGTC+CGG	0.461435	2:-79596807	MsaT010947.1:CDS
AACGACTTGTTTCAAGATGT+TGG	0.464169	2:-79597637	MsaT010947.1:CDS
CCACAGTCATAGTCATCCTC+CGG	0.469987	2:-79595564	MsaT010947.1:CDS
AAGTCGTTCGATGAAGCATC+TGG	0.472231	2:+79597652	None:intergenic
CCAAACCACAAAGCTGTTGT+TGG	0.484501	2:+79596712	None:intergenic
GAGACGGCCTTCGAGTCAAA+TGG	0.486664	2:-79596858	MsaT010947.1:CDS
TTTGTCAAACTTCTTTGAGA+AGG	0.488131	2:-79595366	MsaT010947.1:CDS
TGAATCAACAAAGTTTCAGC+TGG	0.492809	2:-79595435	MsaT010947.1:CDS
TCATACATCTTCTGAACAAA+CGG	0.493257	2:+79596782	None:intergenic
AACCGTGCCGTTTAATAACC+TGG	0.495001	2:+79595463	None:intergenic
CGTCTCTTGTCTCTGGATGT+TGG	0.495712	2:+79596875	None:intergenic
GTGGTTATCTGAGAAAATTA+AGG	0.508725	2:-79597611	MsaT010947.1:intron
CTAACATGATCAAGTAAAGT+AGG	0.518656	2:+79595332	None:intergenic
TTGTTGTGTTTGAAATAGGT+TGG	0.526405	2:+79596659	None:intergenic
CGAGCAGCTACTGGATGGCA+TGG	0.526948	2:-79595405	MsaT010947.1:CDS
ATTATATGCCGCCGCATCCA+TGG	0.527906	2:+79595295	None:intergenic
ATACATAGGTATCGAGCTGA+TGG	0.540406	2:+79596621	None:intergenic
TCAGCGGCGGTGGATGAGGA+TGG	0.546046	2:+79596824	None:intergenic
TCCACCGCCGCTGAAAATGA+AGG	0.550734	2:-79596815	MsaT010947.1:CDS
CCGGAGGATGACTATGACTG+TGG	0.551542	2:+79595564	None:intergenic
ATCGAGCTGATGGATGAAGC+TGG	0.552111	2:+79596631	None:intergenic
CACAGTCATAGTCATCCTCC+GGG	0.559092	2:-79595563	MsaT010947.1:CDS
TTCTGCTGTAGATCCAGAAA+GGG	0.561267	2:-79595540	MsaT010947.1:CDS
ATCTTCTGAACAAACGGCGC+CGG	0.569912	2:+79596788	None:intergenic
ATAGTAATAGCTGAAGGTGC+AGG	0.572259	2:-79597718	MsaT010947.1:CDS
CAATATCGAATCCATGGATG+CGG	0.572324	2:-79595306	MsaT010947.1:CDS
TACTGGATGGCATGGAGAAG+AGG	0.574862	2:-79595397	MsaT010947.1:CDS
TAGGCGCAATATCGAATCCA+TGG	0.575915	2:-79595312	MsaT010947.1:CDS
GTTCTGCTGTAGATCCAGAA+AGG	0.579439	2:-79595541	MsaT010947.1:CDS
CTGCAGAAACATTTGTCTGA+AGG	0.579693	2:-79595110	MsaT010947.1:CDS
TGTGTTTGAAATAGGTTGGA+AGG	0.588259	2:+79596663	None:intergenic
TGTTTCAAGATGTTGGTCTG+TGG	0.592209	2:-79597630	MsaT010947.1:CDS
CGACGGACGATATCGTCTCA+TGG	0.592310	2:-79596742	MsaT010947.1:CDS
ACATGTTTCAAATGAAGATG+AGG	0.605669	2:-79595138	MsaT010947.1:CDS
GCAGCATCCATTTGACTCGA+AGG	0.608828	2:+79596851	None:intergenic
GTCCAGGTTATTAAACGGCA+CGG	0.609349	2:-79595465	MsaT010947.1:CDS
TCTGGATCTACAGCAGAACC+CGG	0.614712	2:+79595545	None:intergenic
GGATGACTATGACTGTGGAT+AGG	0.617132	2:+79595569	None:intergenic
TCCTGAAGAATATACACTGT+AGG	0.623219	2:-79595595	MsaT010947.1:CDS
ATGGTTATAGTAATAGCTGA+AGG	0.630661	2:-79597724	MsaT010947.1:CDS
CAGACAAGAACTGAAAGACC+AGG	0.634076	2:-79595071	MsaT010947.1:CDS
TATCGAATCCATGGATGCGG+CGG	0.638808	2:-79595303	MsaT010947.1:CDS
GAGAACGTAAGCGAATTCCA+GGG	0.643353	2:+79596685	None:intergenic
AAGTTCATATCTGAGACAGA+TGG	0.645901	2:+79595182	None:intergenic
AGGCTGTTCAGAAAATGAAG+AGG	0.658976	2:-79595051	MsaT010947.1:CDS
AGAACGTAAGCGAATTCCAG+GGG	0.674620	2:+79596686	None:intergenic
CAACATCCAGAGACAAGAGA+CGG	0.680432	2:-79596874	MsaT010947.1:CDS
TCAGAAGATGTATGACATGG+TGG	0.705908	2:-79596774	MsaT010947.1:CDS
CATGGTGGATGATTCCGCGA+CGG	0.706453	2:-79596759	MsaT010947.1:CDS
ACCGCCGCTGAAAATGAAGG+AGG	0.719377	2:-79596812	MsaT010947.1:CDS
TGTTCAGAAGATGTATGACA+TGG	0.734293	2:-79596777	MsaT010947.1:CDS
GGATCTACAGCAGAACCCGG+AGG	0.744225	2:+79595548	None:intergenic
TGAGACGATATCGTCCGTCG+CGG	0.744820	2:+79596745	None:intergenic
GAACGTAAGCGAATTCCAGG+GGG	0.753677	2:+79596687	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	79595010	79597746	79595010	ID=MsaG010947
Chr2	mRNA	79595010	79597746	79595010	ID=MsaT010947.1;Parent=MsaG010947
Chr2	exon	79595010	79595687	79595010	ID=MsaT010947.1.exon3;Parent=MsaT010947.1
Chr2	CDS	79595010	79595687	79595010	ID=cds.MsaT010947.1;Parent=MsaT010947.1
Chr2	exon	79596625	79596903	79596625	ID=MsaT010947.1.exon2;Parent=MsaT010947.1
Chr2	CDS	79596625	79596903	79596625	ID=cds.MsaT010947.1;Parent=MsaT010947.1
Chr2	exon	79597612	79597746	79597612	ID=MsaT010947.1.exon1;Parent=MsaT010947.1
Chr2	CDS	79597612	79597746	79597612	ID=cds.MsaT010947.1;Parent=MsaT010947.1

Gene Sequence

>MsaT010947.1

ATGGTTATAGTAATAGCTGAAGGTGCAGGTCAGGAGCTAATTCCTTCTAATGACACATCTATCGAGAATAAGCCAGATGCTTCATCGAACGACTTGTTTCAAGATGTTGGTCTGTGGTTATCTGAGAAAATTAAGCAAACGCCAACATCCAGAGACAAGAGACGGCCTTCGAGTCAAATGGATGCTGCACAGCCATCCTCATCCACCGCCGCTGAAAATGAAGGAGGTCCGGCGCCGTTTGTTCAGAAGATGTATGACATGGTGGATGATTCCGCGACGGACGATATCGTCTCATGGAGCTCTACCAACAACAGCTTTGTGGTTTGGAACCCCCTGGAATTCGCTTACGTTCTCCTTCCAACCTATTTCAAACACAACAATTTCTCCAGCTTCATCCATCAGCTCGATACCTATGAATTTAGAAAAATTGATTCGGAGCGTTGCGAGTTTGCTAATGAAGAATTTATAGAAGATCAAAAACATCTCCTGAAGAATATACACTGTAGGAAACCTATCCACAGTCATAGTCATCCTCCGGGTTCTGCTGTAGATCCAGAAAGGGAAGCTTTAGAGGAAGAAATAGAGAAGCTTTCCCAAGAGAAAAATTCGCTCGAGTCCAGGTTATTAAACGGCACGGTTGATGTTGAATCAACAAAGTTTCAGCTGGATGTTTTCGAGCAGCTACTGGATGGCATGGAGAAGAGGCAGACAAGTTTGTCAAACTTCTTTGAGAAGGCTCTTCAGAATCCTACTTTACTTGATCATGTTAGGCGCAATATCGAATCCATGGATGCGGCGGCATATAATAGCTTGATTGTCAATCATTACAATCTCAGTATGGAATTTGAAAATGCTTTCCATCAAGAATTTTCGAATAAACTTAGACTGGAATTGTCACCATCTGTCTCAGATATGAACTTTGTATCAGGTAGCAGTAGCACACATGTTTCAAATGAAGATGAGGAAAGCCTGCAGAAACATTTGTCTGAAGGAGAACTGACAGAAATGCAGACAAGAACTGAAAGACCAGGCTGTTCAGAAAATGAAGAGGCAATATCCTACTATCAAGCAAATCCAAATAATGACAGTTGA

Protein sequence

>MsaT010947.1

MVIVIAEGAGQELIPSNDTSIENKPDASSNDLFQDVGLWLSEKIKQTPTSRDKRRPSSQMDAAQPSSSTAAENEGGPAPFVQKMYDMVDDSATDDIVSWSSTNNSFVVWNPLEFAYVLLPTYFKHNNFSSFIHQLDTYEFRKIDSERCEFANEEFIEDQKHLLKNIHCRKPIHSHSHPPGSAVDPEREALEEEIEKLSQEKNSLESRLLNGTVDVESTKFQLDVFEQLLDGMEKRQTSLSNFFEKALQNPTLLDHVRRNIESMDAAAYNSLIVNHYNLSMEFENAFHQEFSNKLRLELSPSVSDMNFVSGSSSTHVSNEDEESLQKHLSEGELTEMQTRTERPGCSENEEAISYYQANPNNDS*