AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG011000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011000 MtrunA17_Chr2g0331581 96.503 772 20 2 1 765 23 794 0.0 1545
MsaG011000 MtrunA17_Chr8g0350321 42.394 802 377 13 12 763 43 809 0.0 629
MsaG011000 MtrunA17_Chr2g0322731 43.961 712 353 11 84 763 71 768 0.0 610
MsaG011000 MtrunA17_Chr7g0246631 40.977 798 384 14 16 763 17 777 0.0 607
MsaG011000 MtrunA17_Chr4g0024351 42.667 750 375 14 44 763 8 732 0.0 607
MsaG011000 MtrunA17_Chr1g0203671 41.880 702 351 13 111 760 93 789 0.0 565
MsaG011000 MtrunA17_Chr6g0481041 40.533 713 349 14 111 762 27 725 0.0 551
MsaG011000 MtrunA17_Chr5g0410711 37.132 781 400 16 60 760 9 778 9.98e-166 498
MsaG011000 MtrunA17_Chr6g0472471 38.482 751 374 14 73 760 40 765 1.28e-165 497
MsaG011000 MtrunA17_Chr5g0394111 38.657 670 351 13 104 760 24 646 4.84e-151 455
MsaG011000 MtrunA17_Chr7g0224451 37.872 470 249 10 100 558 2 439 5.90e-104 326
MsaG011000 MtrunA17_Chr2g0292731 31.860 543 347 10 232 760 15 548 5.43e-85 280
MsaG011000 MtrunA17_Chr2g0292741 31.238 541 348 10 232 760 7 535 1.69e-80 267
MsaG011000 MtrunA17_Chr7g0224481 37.845 362 192 7 100 452 2 339 6.89e-71 235
MsaG011000 MtrunA17_Chr2g0292761 30.270 555 334 15 222 760 23 540 3.14e-69 237
MsaG011000 MtrunA17_Chr7g0224491 37.736 318 161 10 457 762 3 295 2.32e-63 214
MsaG011000 MtrunA17_Chr2g0319671 32.157 255 134 5 276 498 16 263 4.09e-34 132
MsaG011000 MtrunA17_Chr2g0319691 35.625 160 96 4 392 551 1 153 1.62e-25 103
MsaG011000 MtrunA17_Chr5g0419821 43.846 130 70 2 113 241 33 160 2.59e-25 103
MsaG011000 MtrunA17_Chr2g0319701 30.222 225 146 6 541 760 5 223 3.44e-25 105
MsaG011000 MtrunA17_Chr3g0140351 21.633 735 419 26 103 754 7 667 3.91e-24 108
MsaG011000 MtrunA17_Chr2g0319681 27.753 227 159 4 537 760 1 225 3.15e-23 99.8
MsaG011000 MtrunA17_Chr2g0331131 22.449 539 323 19 102 611 5 477 3.46e-22 102
MsaG011000 MtrunA17_Chr4g0028991 22.878 542 318 19 100 611 12 483 5.98e-22 101
MsaG011000 MtrunA17_Chr7g0224461 41.129 124 56 4 648 762 1 116 1.10e-18 82.4
MsaG011000 MtrunA17_Chr2g0304191 26.667 135 99 0 286 420 1 135 1.99e-14 70.9
MsaG011000 MtrunA17_Chr7g0265521 41.176 102 55 1 99 200 51 147 7.55e-14 72.0
MsaG011000 MtrunA17_Chr1g0205981 31.395 172 91 5 172 320 5 172 6.64e-13 68.6
MsaG011000 MtrunA17_Chr7g0224431 24.540 163 81 2 301 463 1 121 1.60e-12 65.1
MsaG011000 MtrunA17_Chr1g0175651 36.842 114 68 1 85 198 127 236 8.97e-12 66.6
MsaG011000 MtrunA17_Chr4g0055851 34.459 148 82 4 51 198 70 202 3.70e-11 64.7
MsaG011000 MtrunA17_Chr6g0453021 30.457 197 105 5 4 200 16 180 4.67e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011000 AT1G79840.1 62.078 770 260 10 1 764 3 746 0.0 947
MsaG011000 AT1G79840.2 62.078 770 260 10 1 764 32 775 0.0 942
MsaG011000 AT1G79840.3 64.194 701 232 7 70 764 1 688 0.0 911
MsaG011000 AT1G79840.6 64.194 701 232 7 70 764 1 688 0.0 911
MsaG011000 AT1G79840.4 62.016 645 213 10 1 639 3 621 0.0 784
MsaG011000 AT4G04890.2 43.056 720 360 11 84 765 33 740 0.0 609
MsaG011000 AT4G04890.1 43.056 720 360 11 84 765 33 740 0.0 609
MsaG011000 AT4G00730.1 43.875 702 351 11 89 763 116 801 0.0 600
MsaG011000 AT1G79840.5 59.886 526 179 10 1 520 3 502 0.0 597
MsaG011000 AT4G21750.2 42.777 713 346 10 106 763 55 760 0.0 597
MsaG011000 AT4G21750.1 42.777 713 346 10 106 763 55 760 0.0 597
MsaG011000 AT4G21750.3 42.777 713 346 10 106 763 55 760 0.0 597
MsaG011000 AT4G21750.4 42.777 713 346 10 106 763 55 760 0.0 597
MsaG011000 AT1G05230.3 42.959 703 358 9 84 763 35 717 0.0 592
MsaG011000 AT1G05230.8 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.4 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.9 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.10 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.7 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.11 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.2 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.6 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.5 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT1G05230.1 42.595 709 354 10 84 763 35 719 0.0 592
MsaG011000 AT3G61150.1 41.813 739 342 13 92 763 89 806 0.0 579
MsaG011000 AT5G52170.3 40.666 691 358 15 84 760 26 678 1.60e-162 486
MsaG011000 AT5G52170.1 40.666 691 358 15 84 760 26 678 1.60e-162 486
MsaG011000 AT1G05230.12 42.634 577 297 7 84 638 35 599 6.91e-162 482
MsaG011000 AT1G17920.2 38.515 714 371 15 85 762 2 683 4.78e-161 483
MsaG011000 AT1G17920.1 38.515 714 371 15 85 762 2 683 4.78e-161 483
MsaG011000 AT5G52170.2 40.376 691 365 13 84 760 26 683 5.74e-161 483
MsaG011000 AT1G73360.1 39.342 699 360 18 112 761 31 714 2.16e-160 482
MsaG011000 AT2G32370.1 39.712 695 364 15 99 763 54 723 1.07e-157 475
MsaG011000 AT5G46880.3 35.772 738 385 19 88 760 93 806 1.96e-143 442
MsaG011000 AT5G46880.1 35.772 738 385 19 88 760 93 806 1.96e-143 442
MsaG011000 AT5G46880.2 35.772 738 385 19 88 760 93 806 1.96e-143 442
MsaG011000 AT4G17710.1 37.821 661 353 17 113 760 88 703 1.86e-131 407
MsaG011000 AT5G17320.1 32.377 732 414 18 94 763 6 718 5.27e-123 385
MsaG011000 AT3G03260.1 33.287 721 403 19 98 764 2 698 7.61e-122 382
MsaG011000 AT4G25530.1 33.046 696 421 14 85 763 18 685 2.52e-119 375
MsaG011000 AT4G00730.2 42.105 456 226 7 89 519 116 558 3.42e-117 365
MsaG011000 AT1G34650.1 32.194 702 402 18 120 763 23 708 1.83e-103 333
MsaG011000 AT3G03260.2 32.364 550 322 14 98 610 2 538 1.17e-87 287
MsaG011000 AT5G07260.2 20.818 538 367 16 179 708 10 496 9.32e-27 115
MsaG011000 AT5G07260.1 20.664 542 368 16 179 708 10 501 1.59e-26 115
MsaG011000 AT4G32880.1 21.398 701 411 25 103 727 2 638 1.24e-25 114
MsaG011000 AT5G60690.1 23.194 526 298 21 116 611 25 474 1.18e-21 101
MsaG011000 AT1G30490.1 22.679 657 377 27 104 695 9 599 5.79e-21 99.0
MsaG011000 AT2G34710.1 21.351 740 421 29 106 760 15 678 9.85e-19 91.7
MsaG011000 AT4G26920.1 27.692 195 123 6 264 453 47 228 3.13e-15 79.3
MsaG011000 AT3G60390.1 39.623 106 58 2 96 200 146 246 1.35e-11 67.0
MsaG011000 AT4G16780.1 36.752 117 62 2 88 198 101 211 5.90e-11 64.7

Find 165 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAGACTCCATTGTTAATT+TGG 0.153641 2:-80295635 None:intergenic
CTCCAAGGCAAGTCAAATTT+TGG 0.154977 2:+80290886 MsaT011000.1:CDS
GTCAACAGTGGCCTAGCTTT+TGG 0.171217 2:+80294558 MsaT011000.1:CDS
TGATTTGGGTACGACGATTT+TGG 0.178481 2:-80290911 None:intergenic
TTGGCTTTAAATAGGTAGTA+TGG 0.217597 2:+80294481 MsaT011000.1:intron
TTCAAATTCATCCATTGATT+TGG 0.230510 2:-80289065 None:intergenic
GAGAAGCATTTGTAAGGATT+TGG 0.247426 2:-80295606 None:intergenic
GGGGCAACAAGCCTTATTTA+TGG 0.248716 2:-80291125 None:intergenic
ATTTAAATAATACCTTGATT+TGG 0.259779 2:-80290926 None:intergenic
TGTGGTGGGGACCCCACAAT+TGG 0.267327 2:-80291146 None:intergenic
AGAGAATATTAAAAGCTCTT+TGG 0.271894 2:+80292015 MsaT011000.1:CDS
CGGCATGGCGGTGCGGCGGC+GGG 0.287501 2:+80288926 MsaT011000.1:CDS
TTCAATTGTTTCTGATGGTT+TGG 0.287727 2:+80295507 MsaT011000.1:CDS
GTTTCCATGTTTAATATCTA+AGG 0.290461 2:+80292479 MsaT011000.1:CDS
TTTGTGCTGTTTCTTCTATA+TGG 0.290578 2:+80294969 MsaT011000.1:CDS
TCGGCATGGCGGTGCGGCGG+CGG 0.292792 2:+80288925 MsaT011000.1:CDS
GTTGTCTTCTACTTTGTCTA+TGG 0.298498 2:-80294211 None:intergenic
GGCATGGCGGTGCGGCGGCG+GGG 0.303946 2:+80288927 MsaT011000.1:CDS
GGGGAGGAAGGGAGTACAAT+AGG 0.308975 2:+80288992 MsaT011000.1:CDS
GTGGTGGGGACCCCACAATT+GGG 0.315163 2:-80291145 None:intergenic
GAAGCTTCAATGGATCTCTT+TGG 0.328107 2:-80292232 None:intergenic
TTTAAATAATACCTTGATTT+GGG 0.331757 2:-80290925 None:intergenic
CATAACCTCAGCTTTGAGTT+TGG 0.338433 2:-80291221 None:intergenic
CTCACCAGTTGAATCCTTCA+TGG 0.359314 2:-80294652 None:intergenic
TCCATTGATTTGGATTTAGT+TGG 0.361488 2:-80289055 None:intergenic
ATTGCCTCTGTCTTGTCCTT+TGG 0.362072 2:-80295200 None:intergenic
GCATGGCGGTGCGGCGGCGG+GGG 0.367383 2:+80288928 MsaT011000.1:CDS
GGTAGTATGGGTGGAGCATT+TGG 0.373488 2:+80294494 MsaT011000.1:intron
GAAATTAGCAGCGAGTATTC+AGG 0.374487 2:+80289031 MsaT011000.1:CDS
TGGAGAGGGAAAGAAGTCTT+TGG 0.377024 2:-80288464 None:intergenic
GAGGTGGAAGAAGGGGAGGA+AGG 0.380425 2:+80288980 MsaT011000.1:CDS
CCTACGAGAGACCATAAATA+AGG 0.385213 2:+80291114 MsaT011000.1:CDS
AAGAAATCAAACAAAACATT+AGG 0.391068 2:-80295004 None:intergenic
ATAAGAACAAGAAGAAGAAA+AGG 0.391486 2:+80289146 MsaT011000.1:CDS
AACCAAAATTTGACTTGCCT+TGG 0.392620 2:-80290888 None:intergenic
CATTGCACCATCTCTGTTTG+TGG 0.393009 2:-80291164 None:intergenic
ACTAAGGTTACTAGTAAAAC+TGG 0.395797 2:+80294881 MsaT011000.1:CDS
CAAGAATGGTGCAGTGCAAC+TGG 0.400659 2:+80292542 MsaT011000.1:CDS
AGTAATATGGAGGTGGAAGA+AGG 0.401643 2:+80288971 MsaT011000.1:CDS
GAGAGGCTGAGAGCAGCTTT+AGG 0.403794 2:+80291942 MsaT011000.1:intron
AACAAAACATTAGGAGATAT+AGG 0.411699 2:-80294995 None:intergenic
CAACAACTTAGCAAGCAATT+AGG 0.414776 2:+80290858 MsaT011000.1:CDS
TCTTTGGCTTTAGAAGTAGA+AGG 0.415922 2:-80288448 None:intergenic
ACAAAATACACTTCTCTAGT+TGG 0.422278 2:-80294138 None:intergenic
TTATAAGCTCCTCCATTGCT+TGG 0.425119 2:-80292093 None:intergenic
TGAAAATCCTGAGGGCAGTA+TGG 0.428055 2:-80295488 None:intergenic
AATCAGAAATAGAGAAACTA+AGG 0.429794 2:+80291077 MsaT011000.1:CDS
AGGTGGAAGAAGGGGAGGAA+GGG 0.430407 2:+80288981 MsaT011000.1:CDS
TGTATCTCTTGAAGCTTCAA+TGG 0.438168 2:-80292242 None:intergenic
TGGATCTCTTTGGTCTTCCA+TGG 0.443218 2:-80292222 None:intergenic
CTGTAGGAGAAGCATTTGTA+AGG 0.443396 2:-80295612 None:intergenic
AGGCTTGTTGCCCCAATTGT+GGG 0.447887 2:+80291134 MsaT011000.1:CDS
TTAGGTGTTGCCACATTGGC+TGG 0.448272 2:+80294776 MsaT011000.1:intron
AGCTTTAGGAAATATGCATC+AGG 0.450312 2:+80291956 MsaT011000.1:CDS
ATTGAAGCTTCAAGAGATAC+AGG 0.451772 2:+80292244 MsaT011000.1:CDS
CCCATCTGGTTGCATTATTG+AGG 0.452497 2:+80294266 MsaT011000.1:CDS
GTAATATGGAGGTGGAAGAA+GGG 0.456514 2:+80288972 MsaT011000.1:CDS
TACGCACCTGTGGATATTAC+CGG 0.457137 2:+80295424 MsaT011000.1:CDS
TCTTGATGAGTCAAGAATAA+TGG 0.457181 2:+80292060 MsaT011000.1:CDS
ACAAGTCTAAATTGTGAAGA+TGG 0.459079 2:+80295703 MsaT011000.1:CDS
TCCAACTAAATCCAAATCAA+TGG 0.462181 2:+80289054 MsaT011000.1:CDS
TTTCTGATGGTTTGGAGTCA+AGG 0.463190 2:+80295515 MsaT011000.1:CDS
GTGCATCAAGCTTCCATACA+TGG 0.464344 2:+80294858 MsaT011000.1:CDS
GACGTTCGCATTGAAGTTGA+AGG 0.466117 2:-80294602 None:intergenic
AAATGCAGAAAACGCCCATC+TGG 0.466193 2:+80294252 MsaT011000.1:CDS
AATGATCCTAGTGAACATCT+TGG 0.466350 2:+80294938 MsaT011000.1:CDS
TGCTATGTTTGCAGAATCAA+TGG 0.466472 2:+80292448 MsaT011000.1:intron
TCCTTTGGCTAAATTTGCAA+TGG 0.466744 2:-80295185 None:intergenic
TAGTAACCTTAGTCCATGTA+TGG 0.466982 2:-80294871 None:intergenic
CACAAATTCTTACGAATCAA+TGG 0.474074 2:+80295396 MsaT011000.1:CDS
GCTAAGAGAGAGAGCTGGAG+AGG 0.488674 2:-80288479 None:intergenic
TAATATGGAGGTGGAAGAAG+GGG 0.489966 2:+80288973 MsaT011000.1:CDS
CTTATTTATGGTCTCTCGTA+GGG 0.492068 2:-80291113 None:intergenic
ACTTCTCTAGTTGGAACCAT+TGG 0.492214 2:-80294129 None:intergenic
GTAAAACTGGAGAAGACATA+AGG 0.495014 2:+80294894 MsaT011000.1:CDS
ATTATTGAGGATAAGTCAAA+TGG 0.496385 2:+80294279 MsaT011000.1:CDS
AAGGCTTGTTGCCCCAATTG+TGG 0.499744 2:+80291133 MsaT011000.1:CDS
TGGCTTTAAATAGGTAGTAT+GGG 0.500533 2:+80294482 MsaT011000.1:intron
CTTATAAAGATGGCAACAAT+GGG 0.505105 2:+80292109 MsaT011000.1:CDS
CAGTGGGATATAATGTCTAA+TGG 0.509556 2:+80295148 MsaT011000.1:intron
GGTATTCAATCCGTGATGAC+CGG 0.513881 2:+80295445 MsaT011000.1:CDS
CCTTATTTATGGTCTCTCGT+AGG 0.514357 2:-80291114 None:intergenic
GCACCATCTCTGTTTGTGGT+GGG 0.514855 2:-80291160 None:intergenic
AAATCAATGGATGAATTTGA+AGG 0.515118 2:+80289067 MsaT011000.1:CDS
AATCAAAAGAAAACAATATG+TGG 0.518388 2:+80295356 MsaT011000.1:CDS
TGCACCATCTCTGTTTGTGG+TGG 0.525119 2:-80291161 None:intergenic
TCCTCAATAATGCAACCAGA+TGG 0.528035 2:-80294267 None:intergenic
TGGTTTGGAGTCAAGGCAAA+TGG 0.529541 2:+80295522 MsaT011000.1:CDS
GTTCCCATGAAGGATTCAAC+TGG 0.531129 2:+80294648 MsaT011000.1:CDS
AAATCGTCGTACCCAAATCA+AGG 0.531425 2:+80290914 MsaT011000.1:CDS
CACCATCTCTGTTTGTGGTG+GGG 0.533160 2:-80291159 None:intergenic
AAGCTTCCATACATGGACTA+AGG 0.539054 2:+80294865 MsaT011000.1:CDS
TGGTGGGGACCCCACAATTG+GGG 0.540284 2:-80291144 None:intergenic
GCTTATAAAGATGGCAACAA+TGG 0.540324 2:+80292108 MsaT011000.1:CDS
GGAGAAGGTTCTAACAAGAA+TGG 0.540967 2:+80292528 MsaT011000.1:CDS
GTTGCAAATGTTAACACCAA+TGG 0.544408 2:+80294113 MsaT011000.1:CDS
ATAGTTAAGTATTTCACGAC+CGG 0.544434 2:-80292161 None:intergenic
TCCATTGTTAATTTGGCTGT+AGG 0.545967 2:-80295628 None:intergenic
GGCAACAAACGTTCCCATGA+AGG 0.546780 2:+80294638 MsaT011000.1:CDS
AATGCCTTGCCCCAAAAGCT+AGG 0.549012 2:-80294569 None:intergenic
TCCATTGCAAATTTAGCCAA+AGG 0.550629 2:+80295184 MsaT011000.1:CDS
CGAATCACATCCGGTCATCA+CGG 0.551333 2:-80295455 None:intergenic
TAGATTGCTCGAATCACATC+CGG 0.551516 2:-80295464 None:intergenic
AATGGAGGAGCTTATAAAGA+TGG 0.553738 2:+80292099 MsaT011000.1:CDS
ATTCTCTTGGTCATGACTAG+TGG 0.554085 2:-80291999 None:intergenic
AGCAATTAGGTCTTGCTCCA+AGG 0.554546 2:+80290871 MsaT011000.1:CDS
TAACTATGATGAATATATGA+AGG 0.554639 2:+80292177 MsaT011000.1:CDS
TCACCAGTTGAATCCTTCAT+GGG 0.555142 2:-80294651 None:intergenic
GGGATATAATGTCTAATGGT+GGG 0.556948 2:+80295152 MsaT011000.1:CDS
GGCAAATGGTAATTACTTCG+AGG 0.560541 2:+80295536 MsaT011000.1:CDS
AATCTAGCCATACTGCCCTC+AGG 0.562964 2:+80295481 MsaT011000.1:CDS
GAGGAAGGGAGTACAATAGG+AGG 0.565183 2:+80288995 MsaT011000.1:CDS
TGAATACCGGTAATATCCAC+AGG 0.566945 2:-80295430 None:intergenic
TATGGAGGTGGAAGAAGGGG+AGG 0.567505 2:+80288976 MsaT011000.1:CDS
GGCTTGTTGCCCCAATTGTG+GGG 0.570159 2:+80291135 MsaT011000.1:CDS
AGAAAAGGAAGAAATATCAC+AGG 0.572043 2:+80289161 MsaT011000.1:CDS
AATGGTAATTACTTCGAGGC+GGG 0.572459 2:+80295540 MsaT011000.1:CDS
GGTCATCACGGATTGAATAC+CGG 0.575578 2:-80295443 None:intergenic
CCTCAATAATGCAACCAGAT+GGG 0.578551 2:-80294266 None:intergenic
GGATGTAGTAAACCAAGCAA+TGG 0.580722 2:+80292081 MsaT011000.1:CDS
CTAAGAGAGAGAGCTGGAGA+GGG 0.582499 2:-80288478 None:intergenic
TTCTGAACAGATCAGAGTCA+TGG 0.585454 2:+80289189 MsaT011000.1:CDS
ATTGTTAGGTGTTGCCACAT+TGG 0.587255 2:+80294772 MsaT011000.1:intron
ATCAGAAATAGAGAAACTAA+GGG 0.588729 2:+80291078 MsaT011000.1:CDS
TGGGATATAATGTCTAATGG+TGG 0.590022 2:+80295151 MsaT011000.1:CDS
ACAAGGCTAAGAGAGAGAGC+TGG 0.592876 2:-80288484 None:intergenic
TCCTACAGCCAAATTAACAA+TGG 0.597793 2:+80295627 MsaT011000.1:CDS
GCCGTTGAAAATTCAGACCA+TGG 0.602698 2:+80292205 MsaT011000.1:CDS
TACAATAGGAGGTGAGCGTG+TGG 0.603598 2:+80289006 MsaT011000.1:CDS
TTACAGCATCAAGAAAACAT+TGG 0.605442 2:-80292297 None:intergenic
GACACTATATGCAAAGGAGA+AGG 0.607999 2:+80292513 MsaT011000.1:CDS
TGTAGTAAACCAAGCAATGG+AGG 0.608774 2:+80292084 MsaT011000.1:CDS
GATGAACTTGAAGATGATGA+AGG 0.609560 2:+80289091 MsaT011000.1:CDS
AGCTAGGCCACTGTTGACAA+TGG 0.614429 2:-80294553 None:intergenic
GATGAAGGTGAAGATGATGA+AGG 0.621690 2:+80289106 MsaT011000.1:CDS
AGAAACAATTGAAAATCCTG+AGG 0.621946 2:-80295497 None:intergenic
CACAAACAGAGATGGTGCAA+TGG 0.622132 2:+80291165 MsaT011000.1:CDS
CAAATTAACAATGGAGTCTG+TGG 0.624759 2:+80295636 MsaT011000.1:CDS
GAAACAATTGAAAATCCTGA+GGG 0.625241 2:-80295496 None:intergenic
ACGTTCGCATTGAAGTTGAA+GGG 0.628268 2:-80294601 None:intergenic
GTCCCCACCACAAACAGAGA+TGG 0.629482 2:+80291157 MsaT011000.1:CDS
AATAGGAGGTGAGCGTGTGG+AGG 0.632405 2:+80289009 MsaT011000.1:CDS
ACAGTTGACACTATATGCAA+AGG 0.638611 2:+80292507 MsaT011000.1:CDS
TGGTTACGTAGCTTAGAGAC+CGG 0.638972 2:+80292142 MsaT011000.1:CDS
ATCAATCCAAGATGTTCACT+AGG 0.639331 2:-80294944 None:intergenic
ATGTTTGCAGAATCAATGGA+AGG 0.640926 2:+80292452 MsaT011000.1:intron
AAATGCCAAACTCAAAGCTG+AGG 0.643784 2:+80291216 MsaT011000.1:CDS
TTGGCTTTAGAAGTAGAAGG+AGG 0.644576 2:-80288445 None:intergenic
CTTTAAATAGGTAGTATGGG+TGG 0.647600 2:+80294485 MsaT011000.1:intron
GCTGCCTTAGATATTAAACA+TGG 0.649260 2:-80292483 None:intergenic
CACATCCTGATGAAAAGCAG+AGG 0.653751 2:+80290835 MsaT011000.1:CDS
GCTTTAGGAAATATGCATCA+GGG 0.653862 2:+80291957 MsaT011000.1:CDS
GATGATGAAGGTGATGGTGA+TGG 0.658053 2:+80289118 MsaT011000.1:CDS
TCTAAGCTACGTAACCACAT+TGG 0.660378 2:-80292136 None:intergenic
AAATGGTAATTACTTCGAGG+CGG 0.664685 2:+80295539 MsaT011000.1:CDS
GGATGAAACTCGTCGAACTG+AGG 0.665962 2:+80295030 MsaT011000.1:CDS
GGTGAAGATGATGAAGGTGA+TGG 0.672812 2:+80289112 MsaT011000.1:CDS
AATGGTGGTATACGCACCTG+TGG 0.675541 2:+80295414 MsaT011000.1:CDS
AGTTGGCACAAAGAATGACA+TGG 0.675595 2:+80294816 MsaT011000.1:CDS
TATCGCACCATTGTCAACAG+TGG 0.688962 2:+80294546 MsaT011000.1:CDS
AAATTCTTACGAATCAATGG+TGG 0.698012 2:+80295399 MsaT011000.1:CDS
AGATACTGCAAGCAGTTGAG+TGG 0.698583 2:+80294162 MsaT011000.1:CDS
CAACAATGGGTGAACCAATG+TGG 0.720119 2:+80292122 MsaT011000.1:CDS
TCATGACTAGTGGAACATGA+AGG 0.724034 2:-80291989 None:intergenic
TTAGCCAAAGGACAAGACAG+AGG 0.726395 2:+80295196 MsaT011000.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 80288418 80295729 80288418 ID=MsaG011000
Chr2 mRNA 80288418 80295729 80288418 ID=MsaT011000.1;Parent=MsaG011000
Chr2 exon 80288418 80288504 80288418 ID=MsaT011000.1.exon1;Parent=MsaT011000.1
Chr2 CDS 80288418 80288504 80288418 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80288914 80289215 80288914 ID=MsaT011000.1.exon2;Parent=MsaT011000.1
Chr2 CDS 80288914 80289215 80288914 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80290818 80290935 80290818 ID=MsaT011000.1.exon3;Parent=MsaT011000.1
Chr2 CDS 80290818 80290935 80290818 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80291043 80291237 80291043 ID=MsaT011000.1.exon4;Parent=MsaT011000.1
Chr2 CDS 80291043 80291237 80291043 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80291947 80292315 80291947 ID=MsaT011000.1.exon5;Parent=MsaT011000.1
Chr2 CDS 80291947 80292315 80291947 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80292462 80292563 80292462 ID=MsaT011000.1.exon6;Parent=MsaT011000.1
Chr2 CDS 80292462 80292563 80292462 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80294102 80294311 80294102 ID=MsaT011000.1.exon7;Parent=MsaT011000.1
Chr2 CDS 80294102 80294311 80294102 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80294495 80294669 80294495 ID=MsaT011000.1.exon8;Parent=MsaT011000.1
Chr2 CDS 80294495 80294669 80294495 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80294780 80295051 80294780 ID=MsaT011000.1.exon9;Parent=MsaT011000.1
Chr2 CDS 80294780 80295051 80294780 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80295151 80295237 80295151 ID=MsaT011000.1.exon10;Parent=MsaT011000.1
Chr2 CDS 80295151 80295237 80295151 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Chr2 exon 80295349 80295729 80295349 ID=MsaT011000.1.exon11;Parent=MsaT011000.1
Chr2 CDS 80295349 80295729 80295349 ID=cds.MsaT011000.1;Parent=MsaT011000.1
Gene Sequence

>MsaT011000.1

ATGTGTGCAGACATGTCTAATAATAATCCTCCTTCTACTTCTAAAGCCAAAGACTTCTTTCCCTCTCCAGCTCTCTCTCTTAGCCTTGCGGGGATTTTTCGGCATGGCGGTGCGGCGGCGGGGGAGGGTGAAGGAGGGAGTTTTAGTAATATGGAGGTGGAAGAAGGGGAGGAAGGGAGTACAATAGGAGGTGAGCGTGTGGAGGAAATTAGCAGCGAGTATTCAGGTCCAACTAAATCCAAATCAATGGATGAATTTGAAGGAGATGAACTTGAAGATGATGAAGGTGAAGATGATGAAGGTGATGGTGATGGTGATAATAAGAACAAGAAGAAGAAAAGGAAGAAATATCACAGGCACACTTCTGAACAGATCAGAGTCATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAATTAGGTCTTGCTCCAAGGCAAGTCAAATTTTGGTTCCAAAATCGTCGTACCCAAATCAAGGCAATACAAGAGCGACATGAAAATTCATTGTTGAAATCAGAAATAGAGAAACTAAGGGAGAAAAATAAGACCCTACGAGAGACCATAAATAAGGCTTGTTGCCCCAATTGTGGGGTCCCCACCACAAACAGAGATGGTGCAATGGCAACTGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCTGAGGCTGAGAGCAGCTTTAGGAAATATGCATCAGGGACAATGTCACCTTCATGTTCCACTAGTCATGACCAAGAGAATATTAAAAGCTCTTTGGATTTTTATACTGGAATTTTTGGTCTTGATGAGTCAAGAATAATGGATGTAGTAAACCAAGCAATGGAGGAGCTTATAAAGATGGCAACAATGGGTGAACCAATGTGGTTACGTAGCTTAGAGACCGGTCGTGAAATACTTAACTATGATGAATATATGAAGGAGTTTGCCGTTGAAAATTCAGACCATGGAAGACCAAAGAGATCCATTGAAGCTTCAAGAGATACAGGAGTTGTTTTTGCAGATCTTTCTCGGATCGTCCAATGTTTTCTTGATGCTAATCAATGGAAGGAAATGTTTCCATGTTTAATATCTAAGGCAGCAACAGTTGACACTATATGCAAAGGAGAAGGTTCTAACAAGAATGGTGCAGTGCAACTGATGTTTGCTGAGTTGCAAATGTTAACACCAATGGTTCCAACTAGAGAAGTGTATTTTGTCAGATACTGCAAGCAGTTGAGTGGTGAAAAATGGGCTATTGTTGATGTGTCCATAGACAAAGTAGAAGACAACATTGACAAGTCCCTAGTGAAATGCAGAAAACGCCCATCTGGTTGCATTATTGAGGATAAGTCAAATGGACATTGCAAAGTAGTATGGGTGGAGCATTTGGAGTGTCAAAAGAGTGTAGTTCATTCAATGTATCGCACCATTGTCAACAGTGGCCTAGCTTTTGGGGCAAGGCATTGGATTGCGACCCTTCAACTTCAATGCGAACGTCTAGTTTTCTTCATGGCAACAAACGTTCCCATGAAGGATTCAACTGGTGTTGCCACATTGGCTGGAAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGTCAAGCAATTAGTGCATCAAGCTTCCATACATGGACTAAGGTTACTAGTAAAACTGGAGAAGACATAAGGATTAGCTCTAGAAAGAACTTGAATGATCCTAGTGAACATCTTGGATTGATAGTTTGTGCTGTTTCTTCTATATGGTTGCCTATATCTCCTAATGTTTTGTTTGATTTCTTGAGGGATGAAACTCGTCGAACTGAGTGGGATATAATGTCTAATGGTGGGACAGTGCAATCCATTGCAAATTTAGCCAAAGGACAAGACAGAGGCAATGCAGTAACTATCCAAACAATTAAATCAAAAGAAAACAATATGTGGATACTGCAAGATAGCTGCACAAATTCTTACGAATCAATGGTGGTATACGCACCTGTGGATATTACCGGTATTCAATCCGTGATGACCGGATGTGATTCGAGCAATCTAGCCATACTGCCCTCAGGATTTTCAATTGTTTCTGATGGTTTGGAGTCAAGGCAAATGGTAATTACTTCGAGGCGGGAAGAGAAAAATACAGAAGGAGGATCTTTGTTTACAATAGCATTCCAAATCCTTACAAATGCTTCTCCTACAGCCAAATTAACAATGGAGTCTGTGGACTCTGTCAACTCTCTTGTATCATGTACATTGAGACACATCAAAACAAGTCTAAATTGTGAAGATGGTTAG

Protein sequence

>MsaT011000.1

MCADMSNNNPPSTSKAKDFFPSPALSLSLAGIFRHGGAAAGEGEGGSFSNMEVEEGEEGSTIGGERVEEISSEYSGPTKSKSMDEFEGDELEDDEGEDDEGDGDGDNKNKKKKRKKYHRHTSEQIRVMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLREKNKTLRETINKACCPNCGVPTTNRDGAMATEEQQLRIENAKLKAEAESSFRKYASGTMSPSCSTSHDQENIKSSLDFYTGIFGLDESRIMDVVNQAMEELIKMATMGEPMWLRSLETGREILNYDEYMKEFAVENSDHGRPKRSIEASRDTGVVFADLSRIVQCFLDANQWKEMFPCLISKAATVDTICKGEGSNKNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSGEKWAIVDVSIDKVEDNIDKSLVKCRKRPSGCIIEDKSNGHCKVVWVEHLECQKSVVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCQAISASSFHTWTKVTSKTGEDIRISSRKNLNDPSEHLGLIVCAVSSIWLPISPNVLFDFLRDETRRTEWDIMSNGGTVQSIANLAKGQDRGNAVTIQTIKSKENNMWILQDSCTNSYESMVVYAPVDITGIQSVMTGCDSSNLAILPSGFSIVSDGLESRQMVITSRREEKNTEGGSLFTIAFQILTNASPTAKLTMESVDSVNSLVSCTLRHIKTSLNCEDG*