AlfalfaGEDB | MsaG011003

M. sativa ssp. caerulea / MsaG011003

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF13912.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011003	XP_024632959.1	73.391	233	57	3	1	232	1	229	1.75e-97	304
MsaG011003	XP_024632959.1	79.217	332	38	5	95	397	1	330	2.36e-171	492

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011003	sp\|Q39092\|ZAT1_ARATH	27.132	258	95	8	41	232	1	231	6.44e-13	72.0

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011003	tr\|A0A396JGH2\|A0A396JGH2_MEDTR	73.391	233	57	3	1	232	1	229	8.37e-98	304
MsaG011003	tr\|A0A396JGH2\|A0A396JGH2_MEDTR	79.217	332	38	5	95	397	1	330	1.13e-171	492

TFs/TRs:

Gene ID	Type	Classification
MsaG011003	TF	C2H2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011003	MtrunA17_Chr2g0331601	79.217	332	38	5	95	397	1	330	2.17e-175	492
MsaG011003	MtrunA17_Chr2g0331601	73.391	233	57	3	1	232	1	229	1.61e-101	304
MsaG011003	MtrunA17_Chr6g0481281	40.418	287	92	7	180	397	30	306	4.76e-53	178
MsaG011003	MtrunA17_Chr6g0481281	42.748	131	52	5	109	233	30	143	8.37e-18	83.6
MsaG011003	MtrunA17_Chr6g0481281	62.319	69	21	2	11	75	27	94	9.04e-17	80.5
MsaG011003	MtrunA17_Chr5g0448221	31.429	175	80	5	201	355	55	209	5.02e-14	71.6
MsaG011003	MtrunA17_Chr5g0425411	25.957	235	135	7	8	233	3	207	3.24e-11	63.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011003	AT1G02030.1	27.132	258	95	8	41	232	1	231	6.55e-14	72.0
MsaG011003	AT5G56200.1	38.542	96	45	2	210	305	79	160	5.49e-13	70.9
MsaG011003	AT5G43170.1	29.114	158	80	2	80	233	12	141	5.90e-12	64.7
MsaG011003	AT2G17180.1	27.083	192	121	4	44	235	64	236	1.08e-11	65.5
MsaG011003	AT2G26940.1	37.143	105	61	1	210	309	49	153	1.24e-11	65.5
MsaG011003	AT3G19580.1	33.684	95	51	2	139	233	106	188	3.73e-11	63.9
MsaG011003	AT3G19580.2	33.684	95	51	2	139	233	106	188	3.73e-11	63.9
MsaG011003	AT3G60580.1	28.358	134	76	3	139	272	173	286	7.05e-11	63.2

Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTATCTCTCTTCTGCCATTT+TGG	0.136557	2:-80335883	None:intergenic
CAATACAAGGTAGTTATAAT+AGG	0.224337	2:+80335167	MsaT011003.1:CDS
CAATACAAGGTAGTACTAAT+AGG	0.256706	2:+80335662	MsaT011003.1:CDS
GTGATTTATCTTTGCCAAAA+TGG	0.304193	2:+80335869	MsaT011003.1:CDS
GTCCTTTAAAATCTCTATTC+CGG	0.308881	2:-80335804	None:intergenic
CATGATGAAGTTTCTGCTTA+AGG	0.329845	2:-80335399	None:intergenic
GTGACCATACAAAGCATTCA+TGG	0.407800	2:-80335770	None:intergenic
CCAACCATGAATGCTTTGTA+TGG	0.410676	2:+80335766	MsaT011003.1:CDS
AATACAAGGTAGTACTAATA+GGG	0.424373	2:+80335663	MsaT011003.1:CDS
TACTACCTTGTATTGAGAAA+GGG	0.428907	2:-80335654	None:intergenic
AATACAAGGTAGTTATAATA+GGG	0.431054	2:+80335168	MsaT011003.1:CDS
CACATCAGTGCAATGTTTGT+GGG	0.435235	2:+80335044	MsaT011003.1:CDS
ACACATCAGTGCAATGTTTG+TGG	0.442286	2:+80335538	MsaT011003.1:CDS
TTTAGCAATGGAAAAGCATT+GGG	0.444822	2:+80335073	MsaT011003.1:CDS
TCACATCAGTGCAATGTTTG+TGG	0.451639	2:+80335043	MsaT011003.1:CDS
GTACTACCTTGTATTGAGAA+AGG	0.452759	2:-80335655	None:intergenic
ACACATCAATGCAATGTTTG+TGG	0.453484	2:+80335325	MsaT011003.1:CDS
TTTAGTAACGGAAAAGCATT+GGG	0.453684	2:+80335568	MsaT011003.1:CDS
ATTCGGAAAAGAGGATGAAA+AGG	0.459648	2:+80334957	MsaT011003.1:CDS
TGAGAAAACCTATGAAGATT+CGG	0.461549	2:+80334940	MsaT011003.1:CDS
TTTAGCAACGGAAAAGCATT+GGG	0.462037	2:+80335355	MsaT011003.1:CDS
TGTGTTGGTGAAACATCAAA+TGG	0.466991	2:+80335979	MsaT011003.1:CDS
AGTCAGAAAAGAGGGTGAAA+AGG	0.473192	2:+80335452	MsaT011003.1:CDS
GAATGAGTCGTATGTTATAG+AGG	0.473597	2:+80336080	MsaT011003.1:CDS
GATGATGAAGAAGAAATTGA+TGG	0.474180	2:+80335703	MsaT011003.1:CDS
AGAAGAGGTAGAAAGTGTAT+TGG	0.483023	2:+80335904	MsaT011003.1:CDS
AGTCTGAAAAGAGGATAAAG+AGG	0.489348	2:+80335239	MsaT011003.1:CDS
AGTGATAAGCAGCCAAAGAA+AGG	0.491245	2:+80336039	MsaT011003.1:CDS
TTTGATAAAGATAGTAAGCA+TGG	0.491925	2:+80335196	MsaT011003.1:CDS
AAGCAGCCAAAGAAAGGAAA+AGG	0.495623	2:+80336045	MsaT011003.1:CDS
ACTTCATCATGATTCACAAA+AGG	0.507116	2:+80335411	MsaT011003.1:CDS
ACTCATTCATCATCAACAAA+AGG	0.509294	2:+80335624	MsaT011003.1:CDS
AACTACCTTGTATTGAGAGA+GGG	0.509993	2:-80335159	None:intergenic
CCTATGAAGATTCGGAAAAG+AGG	0.512041	2:+80334948	MsaT011003.1:CDS
ACTTAATCATCGTTCACAAA+AGG	0.517591	2:+80335129	MsaT011003.1:CDS
CATAAAGAAGATCAAGATGA+TGG	0.521149	2:+80335847	MsaT011003.1:CDS
GCTTAAGGAAGTGAGATCTT+CGG	0.523012	2:-80335384	None:intergenic
CAAACCCCTCTCTCAATACA+AGG	0.526964	2:+80335154	MsaT011003.1:CDS
TGGGAATGGCAAGAATGAGC+TGG	0.528852	2:+80335999	MsaT011003.1:CDS
TCTTAAGAAAGTGAGATCTC+CGG	0.549197	2:-80335102	None:intergenic
TCTTAAGAAAGTGAGATCTC+CGG	0.549197	2:-80335597	None:intergenic
CCCGTGAAGAGTCTGAAAAG+AGG	0.549764	2:+80335230	MsaT011003.1:CDS
GAAAAGCATTGGGTGGTCAC+CGG	0.556634	2:+80335083	MsaT011003.1:CDS
GAAAAGCATTGGGTGGTCAC+CGG	0.560535	2:+80335578	MsaT011003.1:CDS
ACTACCTTGTATTGAGAAAG+GGG	0.563148	2:-80335653	None:intergenic
AAAACCCCTTTCTCAATACA+AGG	0.568454	2:+80335649	MsaT011003.1:CDS
CCATACAAAGCATTCATGGT+TGG	0.569961	2:-80335766	None:intergenic
CTATGAAGAGTCAGAAAAGA+GGG	0.570873	2:+80335444	MsaT011003.1:CDS
CCTATGAAGAGTCAGAAAAG+AGG	0.571208	2:+80335443	MsaT011003.1:CDS
ATCTTCTTTATGATATTCAG+TGG	0.577502	2:-80335836	None:intergenic
TCTTTATGATATTCAGTGGG+AGG	0.578179	2:-80335832	None:intergenic
TGGCAGAAGAGAGATAGAAG+AGG	0.582371	2:+80335889	MsaT011003.1:CDS
AAGCGATGAAGATGATGCTA+AGG	0.582770	2:+80335492	MsaT011003.1:CDS
GGGAATGGCAAGAATGAGCT+GGG	0.589572	2:+80336000	MsaT011003.1:CDS
TGAAGATGATGCTAAGGATG+AGG	0.590398	2:+80335498	MsaT011003.1:CDS
ACTACCTTGTATTGAGAGAG+GGG	0.593179	2:-80335158	None:intergenic
GTGTTGGTGAAACATCAAAT+GGG	0.595282	2:+80335980	MsaT011003.1:CDS
TAACTACCTTGTATTGAGAG+AGG	0.601425	2:-80335160	None:intergenic
TCTTCTTTATGATATTCAGT+GGG	0.603725	2:-80335835	None:intergenic
TAGTGATGAAGATGATGCTA+AGG	0.613974	2:+80334997	MsaT011003.1:CDS
AGCAATGGAAAAGCATTGGG+TGG	0.615604	2:+80335076	MsaT011003.1:CDS
AAGTGATGAAGATGATGCTA+AGG	0.616457	2:+80335279	MsaT011003.1:CDS
ATGGATAAAGATCATAAGCA+TGG	0.623190	2:+80334914	MsaT011003.1:CDS
ATGGTCACATGAGGACTCAC+CGG	0.623316	2:+80335785	MsaT011003.1:CDS
AGCAACGGAAAAGCATTGGG+TGG	0.623901	2:+80335358	MsaT011003.1:CDS
GGTGAAACATCAAATGGGAA+TGG	0.636070	2:+80335985	MsaT011003.1:CDS
TGAAGATGATGCTAAGGATG+AGG	0.644459	2:+80335003	MsaT011003.1:CDS
TGAAGATGATGCTAAGGATG+AGG	0.644459	2:+80335285	MsaT011003.1:CDS
AGTAACGGAAAAGCATTGGG+TGG	0.649033	2:+80335571	MsaT011003.1:CDS
GTGTATTGGTAGTGTTGAGG+CGG	0.666307	2:+80335918	MsaT011003.1:CDS
AAAAGTTCTTGTCATAACGA+AGG	0.694153	2:-80335957	None:intergenic
AAAGTGTATTGGTAGTGTTG+AGG	0.694754	2:+80335915	MsaT011003.1:CDS
ATGCTTTGTATGGTCACATG+AGG	0.725028	2:+80335776	MsaT011003.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	80334914	80336107	80334914	ID=MsaG011003
Chr2	mRNA	80334914	80336107	80334914	ID=MsaT011003.1;Parent=MsaG011003
Chr2	exon	80334914	80336107	80334914	ID=MsaT011003.1.exon1;Parent=MsaT011003.1
Chr2	CDS	80334914	80336107	80334914	ID=cds.MsaT011003.1;Parent=MsaT011003.1

Gene Sequence

>MsaT011003.1

ATGGATAAAGATCATAAGCATGGTTATGAGAAAACCTATGAAGATTCGGAAAAGAGGATGAAAAGGTCTTCATGTTCACTATCTAGTGATGAAGATGATGCTAAGGATGAGGTTTCTGTTCAAGAATCTTCACATCAGTGCAATGTTTGTGGGAAAACTTTTAGCAATGGAAAAGCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGAAGAAACTTAATCATCGTTCACAAAAGGTACAAACCCCTCTCTCAATACAAGGTAGTTATAATAGGGCTAGTTTTGATAAAGATAGTAAGCATGGTTTTGAGAACACCCGTGAAGAGTCTGAAAAGAGGATAAAGAGGTCTTTTAGTTCTCTATCAAGTGATGAAGATGATGCTAAGGATGAGGTTTCTATTCAAGAATCTACACATCAATGCAATGTTTGTGGAAAAACTTTTAGCAACGGAAAAGCATTGGGTGGTCACCGAAGATCTCACTTCCTTAAGCAGAAACTTCATCATGATTCACAAAAGGTTGATAATACCTATGAAGAGTCAGAAAAGAGGGTGAAAAGGTCAGCTTGTTCTCTATCAAGCGATGAAGATGATGCTAAGGATGAGGTTTCTGTTCAAGAATCTACACATCAGTGCAATGTTTGTGGAAAAACTTTTAGTAACGGAAAAGCATTGGGTGGTCACCGGAGATCTCACTTTCTTAAGAAGAAACTCATTCATCATCAACAAAAGGTGAAAACCCCTTTCTCAATACAAGGTAGTACTAATAGGGCTAGTTTTGATGATTATGATGATGAAGAAGAAATTGATGGCATAGAGAAACCAACTTGTTCTCTCTGCAAAAAGAAGTTTCCAACCATGAATGCTTTGTATGGTCACATGAGGACTCACCGGAATAGAGATTTTAAAGGACTTAATCCTCCCACTGAATATCATAAAGAAGATCAAGATGATGGTGATTTATCTTTGCCAAAATGGCAGAAGAGAGATAGAAGAGGTAGAAAGTGTATTGGTAGTGTTGAGGCGGCTGCAAATCTTTTGCACCTTCGTTATGACAAGAACTTTTGTGTTGGTGAAACATCAAATGGGAATGGCAAGAATGAGCTGGGCAGTGATAGAAACAGCAGTGATAAGCAGCCAAAGAAAGGAAAAGGTTTATTTGATTTGAATGAGTCGTATGTTATAGAGGACTAA

Protein sequence

>MsaT011003.1

MDKDHKHGYEKTYEDSEKRMKRSSCSLSSDEDDAKDEVSVQESSHQCNVCGKTFSNGKALGGHRRSHFLKKKLNHRSQKVQTPLSIQGSYNRASFDKDSKHGFENTREESEKRIKRSFSSLSSDEDDAKDEVSIQESTHQCNVCGKTFSNGKALGGHRRSHFLKQKLHHDSQKVDNTYEESEKRVKRSACSLSSDEDDAKDEVSVQESTHQCNVCGKTFSNGKALGGHRRSHFLKKKLIHHQQKVKTPFSIQGSTNRASFDDYDDEEEIDGIEKPTCSLCKKKFPTMNALYGHMRTHRNRDFKGLNPPTEYHKEDQDDGDLSLPKWQKRDRRGRKCIGSVEAAANLLHLRYDKNFCVGETSNGNGKNELGSDRNSSDKQPKKGKGLFDLNESYVIED*