AlfalfaGEDB | MsaG011035

M. sativa ssp. caerulea / MsaG011035

KEGG: -
GO: GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011035	XP_003597774.1	98.071	311	1	2	1	306	1	311	0.0	620

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011035	sp\|Q9S7T5\|OFP14_ARATH	36.025	322	145	10	1	295	1	288	5.75e-46	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011035	tr\|G7II51\|G7II51_MEDTR	98.071	311	1	2	1	306	1	311	0.0	620

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TFs/TRs:

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Gene ID	Type	Classification
MsaG011035	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG011035	0.800178	2.721378e-48	3.694115e-46
MsaG000113	MsaG011035	0.830531	5.015631e-55	1.473679e-52
MsaG000118	MsaG011035	0.821320	7.554998e-53	1.720658e-50
MsaG000151	MsaG011035	0.844858	1.091874e-58	4.980164e-56
MsaG000153	MsaG011035	0.845913	5.671825e-59	2.678511e-56
MsaG000187	MsaG011035	0.826117	5.752567e-54	1.492544e-51
MsaG000188	MsaG011035	0.805595	2.093217e-49	3.217612e-47
MsaG000235	MsaG011035	0.804488	3.559727e-49	5.332894e-47
MsaG000242	MsaG011035	0.807827	7.106878e-50	1.151751e-47
MsaG000248	MsaG011035	0.802582	8.804885e-49	1.262290e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011035	MtrunA17_Chr2g0331871	98.071	311	1	2	1	306	1	311	0.0	620
MsaG011035	MtrunA17_Chr4g0004341	47.950	317	127	9	1	306	1	290	3.60e-77	237
MsaG011035	MtrunA17_Chr1g0185481	38.462	143	63	5	133	268	142	266	4.32e-18	82.4
MsaG011035	MtrunA17_Chr7g0259991	47.887	71	35	1	198	268	132	200	3.74e-15	72.8
MsaG011035	MtrunA17_Chr1g0210351	28.689	244	96	9	29	265	26	198	1.54e-13	69.3
MsaG011035	MtrunA17_Chr1g0205341	42.188	64	34	1	203	266	117	177	3.70e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011035	AT1G79960.1	36.025	322	145	10	1	295	1	288	5.85e-47	160
MsaG011035	AT5G04820.1	35.338	133	62	4	134	266	102	210	2.82e-14	72.0
MsaG011035	AT4G14860.1	45.312	64	28	2	204	265	109	167	1.65e-11	62.4

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Find 50 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTCTATGGTAACCTGCT+TGG	0.538786	2:-80594539	None:intergenic
AACAGCATCACCTTCAAAAG+AGG	0.511692	2:+80594168	MsaT011035.1:CDS
AACAGTGCAACACAATTCTC+AGG	0.479484	2:-80594232	None:intergenic
AAGCAGGTTACCATAGAATT+TGG	0.233067	2:+80594541	MsaT011035.1:CDS
AATTGATTGGGACTTCATGG+AGG	0.677814	2:+80594348	MsaT011035.1:CDS
ACAATCAAAGGAAAATTGAT+TGG	0.389239	2:+80594335	MsaT011035.1:CDS
ACACCACCTCAAGATCTTTG+TGG	0.490451	2:+80594028	MsaT011035.1:CDS
AGCGTGAGAACTGTTAGGAT+TGG	0.583174	2:+80594493	MsaT011035.1:CDS
AGGTAACTCAGGATCATTGA+TGG	0.483746	2:+80594075	MsaT011035.1:CDS
ATCAATGATCCTGAGTTACC+TGG	0.499280	2:-80594073	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	80593653	80594573	80593653	ID=MsaG011035
Chr2	mRNA	80593653	80594573	80593653	ID=MsaT011035.1;Parent=MsaG011035
Chr2	exon	80593653	80594573	80593653	ID=MsaT011035.1.exon1;Parent=MsaT011035.1
Chr2	CDS	80593653	80594573	80593653	ID=cds.MsaT011035.1;Parent=MsaT011035.1

Gene Sequence

>MsaT011035.1

ATGCCTAAGAAGCTTCAAAAAACCCTTCAAGATTACCTCAACAAAATCAAAAACAAAAACCCACAGCCTCAAATTCGATTAACCAAAATGCTCTCTGGCTGCAAACATCCCAAAACACCATCTTTTTCCTTGGATAACGGCAGAAACATATCATCCTCAAACGCCGTTAACAACAAAATCAATGATGCTGCAACACTAGCTGACGTTGACCGTTTTCTCTTTGAGAATTTCAAGTCTCTATATTTCAAAGATGATGAAGAAACAGAACAAAACAACAACAACAAAAACAAAAGAATCTCGGATGAAAAAAACAACGAGGAACCACCAAAACGTATTGGTGGTTCCTGGTTGTTGGAGTCACCGAGATTCATTACAACACCACCTCAAGATCTTTGTGGCTCAGCACGATTCTTCGTGAAACCAGGTAACTCAGGATCATTGATGGAAGATGCACTGTCTCTAACAAACAGTGATGAAGCTGATTCGAGTAATTCGAATAATTCAAATTCATCATCAACAGCATCACCTTCAAAAGAGGTTATTGTAGTAAACCATGATGATCACAATCATCACACTCTTCCTGAGAATTGTGTTGCACTGTTATCATATTCTCCGAGTCCTTACGACGATTTCAGGCGATCAATGCAAGAGTTGGTGGAATCAAAGTATGGTAAGATTGAAAACAATCAAAGGAAAATTGATTGGGACTTCATGGAGGAGATTTTGTTTTGTTATCTTAATGTTAATGAGAAAAAATCTCATAAGTTTATATTAAGTGCTTTTGTTGATCTCATCACTGTTATGAGGAAGAATTCAGAGGCTGCTCCGGCGAAGCCGTGCAGCGTGAGAACTGTTAGGATTGGTAGGGAAGTCAGGAAGAAGAAGACCAAGCAGGTTACCATAGAATTTGGTTCCTCTTAG

Protein sequence

>MsaT011035.1

MPKKLQKTLQDYLNKIKNKNPQPQIRLTKMLSGCKHPKTPSFSLDNGRNISSSNAVNNKINDAATLADVDRFLFENFKSLYFKDDEETEQNNNNKNKRISDEKNNEEPPKRIGGSWLLESPRFITTPPQDLCGSARFFVKPGNSGSLMEDALSLTNSDEADSSNSNNSNSSSTASPSKEVIVVNHDDHNHHTLPENCVALLSYSPSPYDDFRRSMQELVESKYGKIENNQRKIDWDFMEEILFCYLNVNEKKSHKFILSAFVDLITVMRKNSEAAPAKPCSVRTVRIGREVRKKKTKQVTIEFGSS*