AlfalfaGEDB | MsaG011139

M. sativa ssp. caerulea / MsaG011139

KEGG: K18490
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011139	AES78040.1	64.072	167	45	4	5	156	1	167	1.62e-58	191

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011139	sp\|O81788\|WOX13_ARATH	49.102	167	57	4	16	154	35	201	5.86e-38	133

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011139	tr\|G7KVS3\|G7KVS3_MEDTR	64.072	167	45	4	5	156	1	167	7.72e-59	191

TFs/TRs:

Gene ID	Type	Classification
MsaG011139	TF	HB-WOX

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001171	MsaG011139	0.814945	2.057357e-51	3.971552e-49
MsaG002015	MsaG011139	0.830160	6.173468e-55	1.794867e-52
MsaG003402	MsaG011139	0.844215	1.623246e-58	7.248614e-56
MsaG004890	MsaG011139	0.808959	4.085952e-50	6.804742e-48
MsaG009843	MsaG011139	0.816355	1.001508e-51	2.003754e-49
MsaG011139	MsaG011667	0.801145	1.731253e-48	2.402031e-46
MsaG011139	MsaG011664	0.842232	5.453104e-58	2.284330e-55
MsaG011139	MsaG011668	0.818958	2.609196e-52	5.583301e-50
MsaG011139	MsaG011685	0.818366	3.550091e-52	7.480099e-50
MsaG011139	MsaG016973	0.800976	1.874081e-48	2.590241e-46
MsaG011139	MsaG018341	0.803828	4.876039e-49	7.194082e-47
MsaG011139	MsaG020020	0.803296	6.278089e-49	9.149449e-47
MsaG011139	MsaG028234	0.823545	2.310328e-53	5.586003e-51
MsaG011139	MsaG035015	0.810045	2.394961e-50	4.094365e-48
MsaG011139	MsaG035532	0.833875	7.530634e-56	2.439056e-53
MsaG011139	MsaG035533	0.801873	1.229969e-48	1.735000e-46
MsaG011139	MsaG035552	0.844725	1.185073e-58	5.381302e-56
MsaG011139	MsaG039599	0.806139	1.610615e-49	2.507727e-47
MsaG011139	MsaG039921	0.818559	3.211572e-52	6.800587e-50
MsaG011139	MsaG041011	0.821745	6.032438e-53	1.389463e-50
MsaG011139	MsaG041253	0.813489	4.299368e-51	8.001384e-49
MsaG011139	MsaG046657	0.826949	3.652465e-54	9.698249e-52
MsaG011139	MsaG041378	0.826467	4.752714e-54	1.245224e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011139	MtrunA17_Chr7g0222981	64.072	167	45	4	5	156	1	167	1.49e-62	191
MsaG011139	MtrunA17_Chr1g0212511	55.488	164	48	3	16	154	22	185	5.86e-51	164
MsaG011139	MtrunA17_Chr3g0144021	46.853	143	50	2	18	134	19	161	3.03e-39	132
MsaG011139	MtrunA17_Chr8g0392991	38.710	93	53	2	58	150	96	184	4.31e-14	68.6
MsaG011139	MtrunA17_Chr4g0043891	39.506	81	42	1	58	138	8	81	5.56e-14	67.4
MsaG011139	MtrunA17_Chr2g0283141	41.935	62	36	0	58	119	55	116	3.41e-12	63.5
MsaG011139	MtrunA17_Chr7g0223471	36.145	83	52	1	37	119	27	108	1.79e-11	61.2
MsaG011139	MtrunA17_Chr7g0238431	37.879	66	41	0	58	123	8	73	1.90e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011139	AT4G35550.1	49.102	167	57	4	16	154	35	201	5.96e-39	133
MsaG011139	AT1G20700.3	45.600	125	43	1	18	117	30	154	1.80e-34	120
MsaG011139	AT1G20700.1	45.600	125	43	1	18	117	30	154	2.60e-34	120
MsaG011139	AT1G20710.1	42.537	134	52	1	18	126	14	147	1.53e-25	97.1
MsaG011139	AT1G20700.2	45.349	86	47	0	32	117	7	92	1.58e-25	95.9
MsaG011139	AT5G45980.1	42.424	66	38	0	54	119	51	116	2.52e-13	66.6
MsaG011139	AT3G18010.1	31.731	104	67	1	28	127	42	145	6.35e-13	65.5
MsaG011139	AT2G33880.2	41.935	62	36	0	58	119	55	116	5.80e-12	63.2
MsaG011139	AT2G33880.1	41.935	62	36	0	58	119	55	116	6.04e-12	62.8
MsaG011139	AT2G28610.1	38.462	65	40	0	58	122	8	72	9.80e-12	61.6
MsaG011139	AT2G01500.1	43.636	55	31	0	58	112	61	115	1.81e-11	61.2

Find 24 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAACTTACTAGTGCGATTT+TGG	0.200209	2:+81831319	None:intergenic
CTGAGACCAATGTATATAAT+TGG	0.221984	2:-81830932	MsaT011139.1:CDS
GGGAGTAGCAATTATCTTAC+TGG	0.353157	2:-81829605	MsaT011139.1:CDS
ACCTGTACAACTTCAAACTA+TGG	0.358508	2:-81831042	MsaT011139.1:CDS
TCCAAGCAAGGAAAAGATAA+AGG	0.385115	2:-81830991	MsaT011139.1:CDS
CTCAGAAATTTGTCCGTGCT+TGG	0.426170	2:+81830950	None:intergenic
TTGGACAAGATATGAATTCA+AGG	0.448892	2:-81831082	MsaT011139.1:intron
TCCATAGTTTGAAGTTGTAC+AGG	0.451456	2:+81831041	None:intergenic
GAAAGGCATGGAGATCTTGA+TGG	0.460857	2:-81831466	None:intergenic
CATATGCATGGTTACTCCTC+AGG	0.462915	2:+81829569	None:intergenic
TATGAATTCAAGGCATCGTT+GGG	0.483810	2:-81831072	MsaT011139.1:CDS
CAAGAGAAAGCATCGGAGTA+GGG	0.507277	2:-81830886	MsaT011139.1:CDS
ACAAGAGAAAGCATCGGAGT+AGG	0.511487	2:-81830887	MsaT011139.1:CDS
GCAAATATTTGAAGATGAGA+CGG	0.560708	2:-81831018	MsaT011139.1:CDS
CTGAAACCAATTATATACAT+TGG	0.563327	2:+81830926	None:intergenic
GGTTTCAGAACAGACGTGCT+AGG	0.577434	2:-81830911	MsaT011139.1:CDS
GTTGTTGATTTAGCCAAGCA+CGG	0.577536	2:-81830963	MsaT011139.1:CDS
ATATGAATTCAAGGCATCGT+TGG	0.578747	2:-81831073	MsaT011139.1:CDS
GTTTGAAGTTGTACAGGTGT+TGG	0.595078	2:+81831047	None:intergenic
GGTTAATGTTGAATCAGAAG+TGG	0.597468	2:-81830865	MsaT011139.1:CDS
TGAGACGGAGTCTCCAAGCA+AGG	0.651947	2:-81831003	MsaT011139.1:CDS
CTTATCATCAGAATCAACCT+CGG	0.655992	2:+81830839	None:intergenic
CTAGGTACAAGAGAAAGCAT+CGG	0.670064	2:-81830893	MsaT011139.1:CDS
TGAATCAGAAGTGGAGACCG+AGG	0.711591	2:-81830856	MsaT011139.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	81829580	81831481	81829580	ID=MsaG011139
Chr2	mRNA	81829580	81831481	81829580	ID=MsaT011139.1;Parent=MsaG011139
Chr2	exon	81829580	81829626	81829580	ID=MsaT011139.1.exon3;Parent=MsaT011139.1
Chr2	CDS	81829580	81829626	81829580	ID=cds.MsaT011139.1;Parent=MsaT011139.1
Chr2	exon	81830799	81831095	81830799	ID=MsaT011139.1.exon2;Parent=MsaT011139.1
Chr2	CDS	81830799	81831095	81830799	ID=cds.MsaT011139.1;Parent=MsaT011139.1
Chr2	exon	81831328	81831481	81831328	ID=MsaT011139.1.exon1;Parent=MsaT011139.1
Chr2	CDS	81831328	81831481	81831328	ID=cds.MsaT011139.1;Parent=MsaT011139.1

Gene Sequence

>MsaT011139.1

ATGGAGATCTTGATGGAGTTGCAGATGAATGATTTGAATCAGAACGTAAATGTGATGACTGATGAACAAGTCGAAACTCTCCGAAAACAAATTGCAGTTTATGCTGTCATCTCTGAACAACTCCTTCAAATGCATAAAAACCAAAATCGCACTAATATGAATTCAAGGCATCGTTGGGCACCAACACCTGTACAACTTCAAACTATGGAGCAAATATTTGAAGATGAGACGGAGTCTCCAAGCAAGGAAAAGATAAAGGAGATTGTTGTTGATTTAGCCAAGCACGGACAAATTTCTGAGACCAATGTATATAATTGGTTTCAGAACAGACGTGCTAGGTACAAGAGAAAGCATCGGAGTAGGGTTAATGTTGAATCAGAAGTGGAGACCGAGGTTGATTCTGATGATAAGAAGATCGATGAGTTTTGTGCGTCTCAACTGGCTTTTGATGGGAGTAGCAATTATCTTACTGGAAAAATGAAAGCACCTGAGGAGTAA

Protein sequence

>MsaT011139.1

MEILMELQMNDLNQNVNVMTDEQVETLRKQIAVYAVISEQLLQMHKNQNRTNMNSRHRWAPTPVQLQTMEQIFEDETESPSKEKIKEIVVDLAKHGQISETNVYNWFQNRRARYKRKHRSRVNVESEVETEVDSDDKKIDEFCASQLAFDGSSNYLTGKMKAPEE*