Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011183 | KEH20194.1 | 79.775 | 267 | 37 | 2 | 1 | 250 | 1 | 267 | 9.06e-145 | 416 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011183 | sp|Q9T072|BH025_ARATH | 36.715 | 207 | 126 | 3 | 54 | 255 | 105 | 311 | 4.95e-35 | 130 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011183 | tr|A0A072TRP6|A0A072TRP6_MEDTR | 79.775 | 267 | 37 | 2 | 1 | 250 | 1 | 267 | 4.33e-145 | 416 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG000004 | MsaG011183 | 0.854496 | 2.285232e-61 | 1.450099e-58 |
MsaG000033 | MsaG011183 | 0.826461 | 4.768630e-54 | 1.249185e-51 |
MsaG000096 | MsaG011183 | 0.806390 | 1.427191e-49 | 2.235416e-47 |
MsaG000125 | MsaG011183 | 0.848027 | 1.505500e-59 | 7.631712e-57 |
MsaG000170 | MsaG011183 | 0.837170 | 1.115301e-56 | 3.987957e-54 |
MsaG000355 | MsaG011183 | 0.827721 | 2.389903e-54 | 6.484594e-52 |
MsaG000431 | MsaG011183 | 0.805332 | 2.375634e-49 | 3.629448e-47 |
MsaG000519 | MsaG011183 | 0.866131 | 7.152434e-65 | 7.070406e-62 |
MsaG000532 | MsaG011183 | 0.844757 | 1.162218e-58 | 5.283323e-56 |
MsaG000599 | MsaG011183 | 0.811165 | 1.375166e-50 | 2.416182e-48 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011183 | MtrunA17_Chr2g0333541 | 85.603 | 257 | 32 | 2 | 1 | 255 | 1 | 254 | 2.22e-146 | 410 |
MsaG011183 | MtrunA17_Chr8g0368371 | 78.723 | 141 | 15 | 1 | 1 | 126 | 1 | 141 | 5.39e-73 | 219 |
MsaG011183 | MtrunA17_Chr8g0336681 | 48.315 | 178 | 83 | 4 | 86 | 255 | 145 | 321 | 1.99e-42 | 147 |
MsaG011183 | MtrunA17_Chr2g0333621 | 38.328 | 287 | 138 | 9 | 1 | 256 | 20 | 298 | 4.88e-42 | 145 |
MsaG011183 | MtrunA17_Chr2g0333641 | 37.818 | 275 | 140 | 9 | 4 | 253 | 23 | 291 | 8.72e-42 | 145 |
MsaG011183 | MtrunA17_Chr4g0002801 | 40.385 | 208 | 113 | 4 | 59 | 255 | 109 | 316 | 1.93e-38 | 137 |
MsaG011183 | MtrunA17_Chr5g0400621 | 43.429 | 175 | 95 | 3 | 82 | 255 | 144 | 315 | 3.45e-38 | 136 |
MsaG011183 | MtrunA17_Chr2g0280161 | 40.000 | 170 | 99 | 3 | 88 | 255 | 168 | 336 | 2.95e-35 | 129 |
MsaG011183 | MtrunA17_Chr4g0002781 | 43.353 | 173 | 95 | 3 | 79 | 248 | 156 | 328 | 1.32e-34 | 127 |
MsaG011183 | MtrunA17_Chr4g0054561 | 39.181 | 171 | 92 | 4 | 90 | 255 | 148 | 311 | 2.47e-34 | 125 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011183 | AT4G37850.2 | 36.715 | 207 | 126 | 3 | 54 | 255 | 105 | 311 | 5.04e-36 | 130 |
MsaG011183 | AT4G37850.1 | 36.715 | 207 | 126 | 3 | 54 | 255 | 105 | 311 | 5.04e-36 | 130 |
MsaG011183 | AT2G22750.2 | 43.275 | 171 | 93 | 1 | 90 | 256 | 119 | 289 | 1.34e-32 | 121 |
MsaG011183 | AT2G22750.1 | 45.399 | 163 | 85 | 1 | 90 | 248 | 119 | 281 | 1.57e-32 | 121 |
MsaG011183 | AT2G22750.5 | 43.275 | 171 | 93 | 1 | 90 | 256 | 143 | 313 | 2.50e-32 | 121 |
MsaG011183 | AT2G22750.3 | 43.275 | 171 | 93 | 1 | 90 | 256 | 147 | 317 | 2.69e-32 | 121 |
MsaG011183 | AT2G22750.4 | 45.399 | 163 | 85 | 1 | 90 | 248 | 147 | 309 | 3.43e-32 | 120 |
MsaG011183 | AT2G22760.1 | 33.136 | 169 | 110 | 3 | 90 | 255 | 112 | 280 | 1.74e-24 | 99.4 |
MsaG011183 | AT2G22760.2 | 34.568 | 162 | 103 | 3 | 90 | 248 | 112 | 273 | 3.96e-24 | 98.2 |
MsaG011183 | AT2G22770.1 | 34.132 | 167 | 95 | 3 | 97 | 248 | 132 | 298 | 1.61e-22 | 94.7 |
Find 47 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTAAGATCATAGAACTTT+CGG | 0.375512 | 2:-82307404 | MsaT011183.1:CDS |
AATGGCTGTGTAGATTGATA+AGG | 0.480377 | 2:-82307261 | MsaT011183.1:intron |
AATGTCTCAGAAGCGCTTCG+AGG | 0.506140 | 2:+82307469 | None:intergenic |
ACATAATGTCGGAGAGGAAT+AGG | 0.390434 | 2:-82307441 | MsaT011183.1:CDS |
ACTAGGCCAGTTGTGGCAAT+AGG | 0.327076 | 2:+82307640 | None:intergenic |
ACTTCTAGAGGTTGAAGTTA+GGG | 0.415145 | 2:-82307057 | MsaT011183.1:CDS |
AGGTTGAAGTTAGGGTTCTT+GGG | 0.401255 | 2:-82307049 | MsaT011183.1:CDS |
AGTACCAATGTCTTGCCATT+TGG | 0.350019 | 2:-82306933 | MsaT011183.1:CDS |
AGTGTCCCTATTGCCACAAC+TGG | 0.491296 | 2:-82307646 | MsaT011183.1:CDS |
AGTTGAATGTGACACATTGA+TGG | 0.456224 | 2:+82307606 | None:intergenic |
CRISPR-GE
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 82306492 | 82307755 | 82306492 | ID=MsaG011183 |
Chr2 | mRNA | 82306492 | 82307755 | 82306492 | ID=MsaT011183.1;Parent=MsaG011183 |
Chr2 | exon | 82306492 | 82306514 | 82306492 | ID=MsaT011183.1.exon3;Parent=MsaT011183.1 |
Chr2 | CDS | 82306492 | 82306514 | 82306492 | ID=cds.MsaT011183.1;Parent=MsaT011183.1 |
Chr2 | exon | 82306898 | 82307270 | 82306898 | ID=MsaT011183.1.exon2;Parent=MsaT011183.1 |
Chr2 | CDS | 82306898 | 82307270 | 82306898 | ID=cds.MsaT011183.1;Parent=MsaT011183.1 |
Chr2 | exon | 82307381 | 82307755 | 82307381 | ID=MsaT011183.1.exon1;Parent=MsaT011183.1 |
Chr2 | CDS | 82307381 | 82307755 | 82307381 | ID=cds.MsaT011183.1;Parent=MsaT011183.1 |
Gene Sequence |
>MsaT011183.1 ATGGAAGAACATTTGTGTCACACAAACAGCACATTTGATGAAGAGTTCCTCAGAGATATCCTGTATCAGACTCCACAAGATCAATTCAGTGTCCCTATTGCCACAACTGGCCTAGTAAACAACTCATCCATCAATGTGTCACATTCAACTCAACATGCTGAAGAAAATCCAACCAACTCATTATCAATACCAACAATTGAACAACACCATGATTCTTTGCCTTTGTCATCATCAACGGATAACCAAGGGTCGAATTCAAAGAAGCCTCGAAGCGCTTCTGAGACATTAGATCACATAATGTCGGAGAGGAATAGGAGACAACTACTTACAAGTAAGATCATAGAACTTTCGGCCTTTATACCTGGATTGAAGAAGATTGATAAGGTTCATGTGATAACGGAAGCTATCAATTACGTGAAACATCTTGAAGAACGTTTGAAAGAGCTAGAAGAAGACATTAAGAAGAAAGATGCAGGATCATTGAGCACCATAAAAAGATCTCGTGTTCTAATTAACAAAGACACTGCAATCGGTGAAATGAACACTGAAGAATGGCGAAATGAATCACTTCTAGAGGTTGAAGTTAGGGTTCTTGGGAAGGAAGTGTTAATCAAGATTCATTGTGGGATGCAAGAAGAGATTGTGGTCAATATAATGTTGCAGCTTCAAATTCTTCATCTCTCCATAACAAGTACCAATGTCTTGCCATTTGGAAATACTCTTGACATCACCATTATTGCCCAGGCAAGTTTAGGCTATGCTCTTGAATAA |
Protein sequence |
>MsaT011183.1 MEEHLCHTNSTFDEEFLRDILYQTPQDQFSVPIATTGLVNNSSINVSHSTQHAEENPTNSLSIPTIEQHHDSLPLSSSTDNQGSNSKKPRSASETLDHIMSERNRRQLLTSKIIELSAFIPGLKKIDKVHVITEAINYVKHLEERLKELEEDIKKKDAGSLSTIKRSRVLINKDTAIGEMNTEEWRNESLLEVEVRVLGKEVLIKIHCGMQEEIVVNIMLQLQILHLSITSTNVLPFGNTLDITIIAQASLGYALE* |