AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG011186


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011186 MtrunA17_Chr2g0333631 78.146 151 25 3 3 152 1 144 5.02e-72 218
MsaG011186 MtrunA17_Chr2g0333621 42.373 295 140 10 12 283 25 312 1.08e-60 195
MsaG011186 MtrunA17_Chr2g0333641 40.678 295 145 9 8 281 21 306 3.89e-54 178
MsaG011186 MtrunA17_Chr4g0002801 44.770 239 120 5 48 282 100 330 1.06e-53 177
MsaG011186 MtrunA17_Chr4g0002781 41.004 239 133 3 48 282 115 349 1.64e-47 162
MsaG011186 MtrunA17_Chr8g0336681 42.857 252 127 7 41 282 91 335 9.27e-47 160
MsaG011186 MtrunA17_Chr2g0333611 40.642 187 100 4 99 282 37 215 5.31e-39 136
MsaG011186 MtrunA17_Chr5g0400621 36.864 236 130 5 51 278 101 325 2.22e-33 124
MsaG011186 MtrunA17_Chr5g0400661 36.757 185 107 3 108 282 150 334 3.27e-32 121
MsaG011186 MtrunA17_Chr6g0468491 29.766 299 178 6 3 278 16 305 9.36e-32 119
MsaG011186 MtrunA17_Chr7g0249811 32.453 265 157 3 18 282 86 328 1.93e-31 119
MsaG011186 MtrunA17_Chr2g0333541 33.942 274 165 4 9 278 3 264 6.43e-30 114
MsaG011186 MtrunA17_Chr4g0049331 33.068 251 156 6 33 281 66 306 1.09e-29 114
MsaG011186 MtrunA17_Chr4g0054561 32.453 265 159 7 22 281 75 324 1.28e-29 114
MsaG011186 MtrunA17_Chr5g0400671 33.945 218 129 3 74 282 112 323 5.03e-29 112
MsaG011186 MtrunA17_Chr2g0280161 37.209 172 104 2 108 278 178 346 1.15e-28 112
MsaG011186 MtrunA17_Chr4g0002831 38.824 170 79 3 118 281 53 203 1.48e-28 108
MsaG011186 MtrunA17_Chr2g0307131 36.416 173 105 3 108 279 180 348 1.31e-27 109
MsaG011186 MtrunA17_Chr4g0054551 32.075 265 160 7 22 281 75 324 4.94e-27 107
MsaG011186 MtrunA17_Chr4g0054581 32.524 206 124 4 84 278 169 370 8.00e-27 107
MsaG011186 MtrunA17_Chr4g0033291 32.927 246 134 8 48 282 99 324 1.25e-26 106
MsaG011186 MtrunA17_Chr2g0307141 35.260 173 107 3 108 279 184 352 2.07e-26 106
MsaG011186 MtrunA17_Chr7g0233441 38.889 162 73 4 123 278 51 192 3.04e-26 102
MsaG011186 MtrunA17_Chr4g0033391 33.714 175 110 3 108 282 148 316 1.55e-25 103
MsaG011186 MtrunA17_Chr4g0054621 28.986 207 129 3 79 278 138 333 1.69e-24 100
MsaG011186 MtrunA17_Chr4g0054571 34.188 234 132 6 63 282 104 329 1.60e-23 98.2
MsaG011186 MtrunA17_Chr4g0002851 36.025 161 81 3 118 278 54 192 9.12e-23 93.2
MsaG011186 MtrunA17_Chr5g0400641 36.025 161 96 2 110 268 1 156 2.18e-22 91.3
MsaG011186 MtrunA17_Chr7g0225901 35.256 156 96 2 108 262 89 240 2.27e-22 93.6
MsaG011186 MtrunA17_Chr4g0033281 32.338 201 123 3 84 278 124 317 1.01e-20 90.5
MsaG011186 MtrunA17_Chr6g0468461 32.444 225 122 8 43 262 112 311 1.18e-20 90.5
MsaG011186 MtrunA17_Chr8g0386921 27.011 174 104 3 108 258 407 580 2.68e-13 70.1
MsaG011186 MtrunA17_Chr1g0185621 28.488 172 92 4 84 241 460 614 5.01e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011186 AT2G22760.1 37.433 187 112 4 99 282 111 295 6.46e-31 117
MsaG011186 AT4G37850.2 36.041 197 123 3 87 283 133 326 6.77e-30 115
MsaG011186 AT4G37850.1 36.041 197 123 3 87 283 133 326 6.77e-30 115
MsaG011186 AT2G22760.2 37.952 166 99 3 99 262 111 274 5.26e-27 107
MsaG011186 AT2G22770.1 32.787 183 111 2 108 278 133 315 3.90e-24 99.8
MsaG011186 AT2G22750.2 35.417 192 99 3 99 277 118 297 1.36e-23 98.2
MsaG011186 AT2G22750.3 35.417 192 99 3 99 277 146 325 2.33e-23 98.2
MsaG011186 AT2G22750.5 35.417 192 99 3 99 277 142 321 2.41e-23 97.8
MsaG011186 AT2G22750.1 35.417 192 98 4 99 277 118 296 4.13e-22 94.0
MsaG011186 AT2G22750.4 35.417 192 98 4 99 277 146 324 5.35e-22 94.4
MsaG011186 AT4G09820.1 35.294 153 69 6 98 246 351 477 8.06e-14 71.6
MsaG011186 AT1G63650.3 29.167 168 96 2 91 239 389 552 1.32e-11 65.1
MsaG011186 AT1G63650.1 29.167 168 96 2 91 239 389 552 1.32e-11 65.1
MsaG011186 AT1G63650.2 29.167 168 96 2 91 239 389 552 1.32e-11 65.1

Find 60 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTATTGTGAAGTATTAT+TGG 0.152976 2:-82354813 None:intergenic
AGTATTAATCTTCTCTTCTT+TGG 0.221402 2:-82353912 None:intergenic
TGGCATTCAACTCAAAATAT+TGG 0.318890 2:+82354977 MsaT011186.1:CDS
GACACTTTCACTTTGATATC+AGG 0.319665 2:-82354912 None:intergenic
ACCAATAATACTTCACAATA+AGG 0.330869 2:+82354812 MsaT011186.1:CDS
TGTTATACAGGACATGGATA+TGG 0.346253 2:+82353625 None:intergenic
ACAGGACATGGATATGGATA+TGG 0.352507 2:+82353631 None:intergenic
CCGTTTGGCAATTCAACTCT+TGG 0.391384 2:+82355047 MsaT011186.1:CDS
TGATTCAAAGCTTATATTTG+AGG 0.412613 2:-82353867 None:intergenic
AATCTTCGTGGCAGCGGTGG+CGG 0.416309 2:-82353735 None:intergenic
AGCACCAGCGTATTGCCGTT+TGG 0.418325 2:+82355032 MsaT011186.1:CDS
CTTCCCTGGTATTGTGGCTA+TGG 0.426831 2:-82353810 None:intergenic
GCGGCTCCGGCTACTATAGA+TGG 0.428100 2:-82353716 None:intergenic
ATATCAGGAAGCAATTCATT+TGG 0.433496 2:-82354897 None:intergenic
CGTGGCAGCGGTGGCGGCTC+CGG 0.438466 2:-82353729 None:intergenic
CGCCAAGGAATTCACCATCT+TGG 0.480758 2:-82353676 None:intergenic
GACAAGGCCTCTATAGTTCA+AGG 0.488754 2:+82354714 MsaT011186.1:CDS
CGGCGAGCTTGCAATCTTCG+TGG 0.489491 2:-82353747 None:intergenic
GCTTGCAATCTTCGTGGCAG+CGG 0.490965 2:-82353741 None:intergenic
TTTGGACTTCCCTGGTATTG+TGG 0.495026 2:-82353816 None:intergenic
CACCAAGATGGTGAATTCCT+TGG 0.497019 2:+82353674 MsaT011186.1:CDS
TGGATCTAGCGGATAACATA+AGG 0.501788 2:+82357882 MsaT011186.1:CDS
CACGAAGATTGCAAGCTCGC+CGG 0.503233 2:+82353748 MsaT011186.1:CDS
CACAATAAGGAAAATTATTG+TGG 0.503978 2:+82354825 MsaT011186.1:CDS
AATTCCATAGCCACAATACC+AGG 0.516400 2:+82353806 MsaT011186.1:CDS
TGGCATTACTATCATCGCTC+AGG 0.520862 2:+82355067 MsaT011186.1:CDS
TGAATTCCTTGGCGACTACA+TGG 0.522050 2:+82353685 MsaT011186.1:CDS
AGCTTTGAATCAAAAGCAAA+TGG 0.523173 2:+82353878 MsaT011186.1:CDS
ACACACTGGCAGAGAGGAGA+AGG 0.529594 2:+82353960 MsaT011186.1:CDS
ATAAGGAAACTGTTGGTGAA+TGG 0.532126 2:+82357899 MsaT011186.1:CDS
GAAGAGAGAATGCTAGTGCT+AGG 0.534839 2:-82353779 None:intergenic
CAAGGAATTCACCATCTTGG+TGG 0.540396 2:-82353673 None:intergenic
ATCAATTGTGAGAAGGAAAG+TGG 0.541302 2:+82354957 MsaT011186.1:CDS
AAAGGTGGTTTGGACTTCCC+TGG 0.544519 2:-82353824 None:intergenic
ACATGGATATGGATATGGAT+TGG 0.544854 2:+82353636 None:intergenic
GATAGCGCCTTGAACTATAG+AGG 0.545601 2:-82354721 None:intergenic
TGTAGATGGGTGATGCATAC+AGG 0.548489 2:+82357849 MsaT011186.1:intron
AATGTTCATTTCACTAGATG+TGG 0.555018 2:-82354859 None:intergenic
AAACGGCAATACGCTGGTGC+TGG 0.555816 2:-82355030 None:intergenic
TGCAATCTTCGTGGCAGCGG+TGG 0.556907 2:-82353738 None:intergenic
GAATCAAAAGCAAATGGCAA+AGG 0.572843 2:+82353884 MsaT011186.1:CDS
CTAGTGCTAGGAAGCAGCTC+CGG 0.573968 2:-82353767 None:intergenic
CCAAGAGTTGAATTGCCAAA+CGG 0.574130 2:-82355047 None:intergenic
CAACAACCATCTATAGTAGC+CGG 0.584716 2:+82353710 MsaT011186.1:CDS
TTTATTACCTTCGTTGAGCG+AGG 0.586963 2:-82354028 None:intergenic
GAATCGATGTGCCACCAAGA+TGG 0.596035 2:+82353662 MsaT011186.1:CDS
CATTTACATCAATTGTGAGA+AGG 0.601314 2:+82354950 MsaT011186.1:CDS
GGATAACATAAGGAAACTGT+TGG 0.609049 2:+82357892 MsaT011186.1:CDS
TATAATTCCTCGCTCAACGA+AGG 0.620367 2:+82354021 MsaT011186.1:CDS
TTCATTTCACTAGATGTGGT+AGG 0.628073 2:-82354855 None:intergenic
GAAGTACAACAAAACAAGAG+AGG 0.639060 2:+82354783 MsaT011186.1:CDS
TGCATACAGGATGACGATGA+TGG 0.639126 2:+82357862 MsaT011186.1:CDS
AAAGACTCTATTTCACACAC+TGG 0.641330 2:+82353946 MsaT011186.1:CDS
GTTGTGCCATGTAGTCGCCA+AGG 0.642754 2:-82353691 None:intergenic
TGATATCAAAGTGAAAGTGT+CGG 0.646805 2:+82354914 MsaT011186.1:CDS
ATTGCCAAACGGCAATACGC+TGG 0.648172 2:-82355036 None:intergenic
GATGACGATGATGGATCTAG+CGG 0.664627 2:+82357871 MsaT011186.1:CDS
TATTTCACACACTGGCAGAG+AGG 0.667005 2:+82353954 MsaT011186.1:CDS
ATTCCATAGCCACAATACCA+GGG 0.679504 2:+82353807 MsaT011186.1:CDS
TCAAGGCGCTATCAATTACG+TGG 0.680617 2:+82354731 MsaT011186.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 82353638 82357940 82353638 ID=MsaG011186
Chr2 mRNA 82353638 82357940 82353638 ID=MsaT011186.1;Parent=MsaG011186
Chr2 exon 82353638 82354042 82353638 ID=MsaT011186.1.exon1;Parent=MsaT011186.1
Chr2 CDS 82353638 82354042 82353638 ID=cds.MsaT011186.1;Parent=MsaT011186.1
Chr2 exon 82354711 82355088 82354711 ID=MsaT011186.1.exon2;Parent=MsaT011186.1
Chr2 CDS 82354711 82355088 82354711 ID=cds.MsaT011186.1;Parent=MsaT011186.1
Chr2 exon 82357854 82357940 82357854 ID=MsaT011186.1.exon3;Parent=MsaT011186.1
Chr2 CDS 82357854 82357940 82357854 ID=cds.MsaT011186.1;Parent=MsaT011186.1
Gene Sequence

>MsaT011186.1

ATGGATATGGATATGGATTGGCTAGAATCGATGTGCCACCAAGATGGTGAATTCCTTGGCGACTACATGGCACAACAACCATCTATAGTAGCCGGAGCCGCCACCGCTGCCACGAAGATTGCAAGCTCGCCGGAGCTGCTTCCTAGCACTAGCATTCTCTCTTCTAATAATTCCATAGCCACAATACCAGGGAAGTCCAAACCACCTTTTTACCCTAAAAAGAGGACTTCCTCAAATATAAGCTTTGAATCAAAAGCAAATGGCAAAGGATTAGCCAAAGAAGAGAAGATTAATACTAGAAGCAAATCAAAGACTCTATTTCACACACTGGCAGAGAGGAGAAGGAGACTTGAACTCGCACATAAATTCACAGAGCTTTCATCTATAATTCCTCGCTCAACGAAGACAGACAAGGCCTCTATAGTTCAAGGCGCTATCAATTACGTGGAAAAACTTCAAAAAAGAGTGATGGAGTTAGAAGTACAACAAAACAAGAGAGGCAAAGAACCAATAATACTTCACAATAAGGAAAATTATTGTGGAGTTCGACCTACCACATCTAGTGAAATGAACATTGACAATTATCTTAGACCAAATGAATTGCTTCCTGATATCAAAGTGAAAGTGTCGGAGAATAATATACTCATTTACATCAATTGTGAGAAGGAAAGTGGCATTCAACTCAAAATATTGGACATGCTTCAAAATCTTCATTTGTTTGTCACCAGCACCAGCGTATTGCCGTTTGGCAATTCAACTCTTGGCATTACTATCATCGCTCAGATGGGTGATGCATACAGGATGACGATGATGGATCTAGCGGATAACATAAGGAAACTGTTGGTGAATGGCGCAAATCGTCGAACATGA

Protein sequence

>MsaT011186.1

MDMDMDWLESMCHQDGEFLGDYMAQQPSIVAGAATAATKIASSPELLPSTSILSSNNSIATIPGKSKPPFYPKKRTSSNISFESKANGKGLAKEEKINTRSKSKTLFHTLAERRRRLELAHKFTELSSIIPRSTKTDKASIVQGAINYVEKLQKRVMELEVQQNKRGKEPIILHNKENYCGVRPTTSSEMNIDNYLRPNELLPDIKVKVSENNILIYINCEKESGIQLKILDMLQNLHLFVTSTSVLPFGNSTLGITIIAQMGDAYRMTMMDLADNIRKLLVNGANRRT*