AlfalfaGEDB | MsaG011210

M. sativa ssp. caerulea / MsaG011210

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011210	XP_024633040.1	97.368	456	3	2	1	456	1	447	0.0	904

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011210	sp\|Q9LEU7\|CIPK5_ARATH	59.775	445	166	3	10	453	4	436	0.0	551

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011210	tr\|A0A072VCV6\|A0A072VCV6_MEDTR	97.345	452	3	2	1	452	1	443	0.0	894

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011210	MtrunA17_Chr2g0333821	97.345	452	3	2	1	452	1	443	0.0	894
MsaG011210	MtrunA17_Chr4g0001331	74.353	464	97	4	1	455	1	451	0.0	706
MsaG011210	MtrunA17_Chr1g0150321	59.685	444	154	3	10	453	5	423	0.0	514
MsaG011210	MtrunA17_Chr4g0013131	51.902	447	199	4	9	453	3	435	9.34e-162	465
MsaG011210	MtrunA17_Chr7g0244521	51.242	443	205	5	10	450	4	437	7.06e-161	462
MsaG011210	MtrunA17_Chr5g0432471	49.890	453	214	6	13	453	7	458	9.89e-155	447
MsaG011210	MtrunA17_Chr2g0284031	51.111	450	198	7	12	447	25	466	3.31e-150	437
MsaG011210	MtrunA17_Chr3g0107011	48.770	447	217	5	6	450	2	438	2.49e-149	433
MsaG011210	MtrunA17_Chr8g0379091	48.498	466	216	8	2	447	8	469	7.43e-148	431
MsaG011210	MtrunA17_Chr2g0284011	48.115	451	220	4	10	456	4	444	2.65e-144	419

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011210	AT5G10930.1	59.775	445	166	3	10	453	4	436	0.0	551
MsaG011210	AT5G25110.1	58.462	455	173	3	1	455	29	467	0.0	549
MsaG011210	AT2G25090.1	56.018	457	179	6	6	453	3	446	4.93e-178	506
MsaG011210	AT5G45820.1	54.422	441	178	2	13	452	7	425	1.38e-169	484
MsaG011210	AT5G58380.1	51.339	448	213	3	10	453	4	450	9.90e-160	460
MsaG011210	AT4G18700.1	51.467	443	200	6	13	447	21	456	7.29e-154	446
MsaG011210	AT5G45810.1	50.110	453	213	8	2	446	13	460	6.71e-147	428
MsaG011210	AT5G01810.1	50.676	444	193	6	9	451	3	421	9.52e-146	422
MsaG011210	AT5G01810.2	50.676	444	193	6	9	451	3	421	9.52e-146	422
MsaG011210	AT4G30960.1	48.904	456	201	6	1	449	7	437	1.61e-144	420

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Find 111 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCCTTGGTTTCAAAT+TGG	0.197442	2:-82636204	MsaT011210.1:CDS
AAAGCTGATATTTGGTCTTG+TGG	0.567796	2:-82636414	MsaT011210.1:CDS
AAAGCTGTCTGCTTCTGCGG+TGG	0.627265	2:-82635926	MsaT011210.1:CDS
AACGGGGAAGAAGGATTTCA+TGG	0.504719	2:-82635860	MsaT011210.1:CDS
AACTCCACCACTGCCACCTC+CGG	0.439142	2:+82635766	None:intergenic
AAGATCCTTGGTTTCAAATT+GGG	0.349354	2:-82636203	MsaT011210.1:CDS
AAGCTGAATTTGAGGGTAAC+GGG	0.401989	2:-82635877	MsaT011210.1:CDS
AATTATCTCAAACGCATTGT+AGG	0.396765	2:+82636023	None:intergenic
ACATAAGCCGGAGTCCCACA+CGG	0.675390	2:+82636477	None:intergenic
ACCAGAATGGATTTCACCGG+GGG	0.612554	2:-82636295	MsaT011210.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	82635657	82637027	82635657	ID=MsaG011210
Chr2	mRNA	82635657	82637027	82635657	ID=MsaT011210.1;Parent=MsaG011210
Chr2	exon	82635657	82637027	82635657	ID=MsaT011210.1.exon1;Parent=MsaT011210.1
Chr2	CDS	82635657	82637027	82635657	ID=cds.MsaT011210.1;Parent=MsaT011210.1

Gene Sequence

>MsaT011210.1

ATGGAGCAACATAATCAAAATAATAGGAAAAGAAACATTCTGTTCAACAAATACGAGATAGGTAAAACTCTAGGGCAAGGAAATTTTGCAAAAGTGTATCATGGAAGAAACATAGCCACAAACGAAAACGTGGCTATCAAAGTGATTAAAAAAGAGAAGCTCAAAAAAGAGAGGCTGATGAAACAAATCAAACGTGAAGTTTCCGTGATGCGTCTCGTTCGTCATCCACATATCGTTGAGCTTAAGGAAGTCATGGCTAACAAGGCCAAAGTCTTCATGGTTGTTGAATACGTCAAAGGTGGTGAACTTTTCGCCAAAGTGGCCAAAGGTAAAATGGAAGAAAATATTGCCAGAAAGTATTTTCAACAATTGATCAGTGCTGTTGATTTCTGTCATAGTCGGGGAGTTACACACCGCGATCTTAAACCCGAGAATCTTCTTTTGGATGAAAATGAAGATCTTAAGGTGTCTGATTTTGGTTTATCAGCCTTACCGGATCAACGAAGATCCGATGGAATGCTTCTCACACCGTGTGGGACTCCGGCTTATGTTGCACCGGAAGTTTTGAAGAAGATTGGTTATGATGGATCTAAAGCTGATATTTGGTCTTGTGGTGTTATTCTTTTTGCTTTGCTTTGTGGATATTTGCCCTTTCAAGGTGAGAATGTTATGAGGATTTATAGCAAATCTTTTAAAGCTGATTATGTTTTACCAGAATGGATTTCACCGGGGGCGAAGAAATTGATTTCTAATTTGCTTGTTGTTGATCCTGAAAAGAGGTTTTCAATTCCTGATATTATGAAAGATCCTTGGTTTCAAATTGGGTTTATGAGACCTATTGCTTTTTCAATGAAAGAATCTGCTGTCGATGATAACATTGATTTCAGTGGAGATGATGAAGGGAATGGCAACAATAGCAATGGTGATGGAAATTCTGTTGAGGTTGTGGGTGAAACTCGAACAAAACATGCTCGTAGACCATCCTACAATGCGTTTGAGATAATTTCATCGCTATCACATGGATTTGATCTAAGGAACTTGTTTGAGACGAGGAAGAGATCGCCTTCAATGTTTATATCAAAGCTGTCTGCTTCTGCGGTGGTGGGGAAGCTGGAGAATGTGGCGAAGAAGCTGAATTTGAGGGTAACGGGGAAGAAGGATTTCATGGTGAGAATGCAGGGGACAACAGAGGGGAGGAAGGGGAAATTGGGTATGACGGTGGAGGTGTTTGAGGTCGCACCGGAGGTGGCAGTGGTGGAGTTTTCTAAGTCAGCTGGAGACACACTTGAGTATGTAAAGTTCTGTGAAGATGAAGTTAGACCTTCTCTCAAAGACATTGTATGGAGCTGGCAGGGTGATACTCAATACTAA

Protein sequence

>MsaT011210.1

MEQHNQNNRKRNILFNKYEIGKTLGQGNFAKVYHGRNIATNENVAIKVIKKEKLKKERLMKQIKREVSVMRLVRHPHIVELKEVMANKAKVFMVVEYVKGGELFAKVAKGKMEENIARKYFQQLISAVDFCHSRGVTHRDLKPENLLLDENEDLKVSDFGLSALPDQRRSDGMLLTPCGTPAYVAPEVLKKIGYDGSKADIWSCGVILFALLCGYLPFQGENVMRIYSKSFKADYVLPEWISPGAKKLISNLLVVDPEKRFSIPDIMKDPWFQIGFMRPIAFSMKESAVDDNIDFSGDDEGNGNNSNGDGNSVEVVGETRTKHARRPSYNAFEIISSLSHGFDLRNLFETRKRSPSMFISKLSASAVVGKLENVAKKLNLRVTGKKDFMVRMQGTTEGRKGKLGMTVEVFEVAPEVAVVEFSKSAGDTLEYVKFCEDEVRPSLKDIVWSWQGDTQY*