AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG011224

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011224 MtrunA17_Chr2g0333981 94.886 176 9 0 1 176 1 176 9.22e-125 348
MsaG011224 MtrunA17_Chr4g0071601 83.333 186 21 2 1 176 1 186 4.35e-101 288
MsaG011224 MtrunA17_Chr8g0379021 70.659 167 49 0 1 167 1 167 3.31e-85 248
MsaG011224 MtrunA17_Chr4g0018951 65.644 163 48 2 1 163 1 155 2.61e-66 200
MsaG011224 MtrunA17_Chr1g0206701 41.040 173 92 2 8 173 5 174 1.97e-41 139
MsaG011224 MtrunA17_Chr3g0099421 41.520 171 90 2 8 171 30 197 1.34e-40 137
MsaG011224 MtrunA17_Chr1g0206991 39.306 173 95 2 8 173 5 174 1.83e-40 135
MsaG011224 MtrunA17_Chr8g0355091 41.520 171 90 3 8 171 5 172 1.99e-40 136
MsaG011224 MtrunA17_Chr1g0149391 39.884 173 94 2 8 173 5 174 5.68e-40 135
MsaG011224 MtrunA17_Chr1g0206721 39.181 171 94 2 8 171 5 172 5.36e-39 132
MsaG011224 MtrunA17_Chr2g0292791 39.766 171 93 3 8 171 5 172 2.25e-38 131
MsaG011224 MtrunA17_Chr1g0208561 40.606 165 88 2 8 165 5 166 1.34e-36 126
MsaG011224 MtrunA17_Chr3g0089141 40.606 165 88 2 8 165 5 166 3.05e-36 125
MsaG011224 MtrunA17_Chr3g0085241 38.506 174 97 2 7 173 36 206 4.07e-36 125
MsaG011224 MtrunA17_Chr3g0119901 38.372 172 102 1 6 173 3 174 5.23e-36 124
MsaG011224 MtrunA17_Chr1g0208581 38.788 165 91 2 8 165 5 166 7.30e-35 122
MsaG011224 MtrunA17_Chr2g0325971 40.606 165 88 2 8 165 5 166 1.01e-34 121
MsaG011224 MtrunA17_Chr1g0206691 35.625 160 93 2 21 173 1 157 2.20e-31 112
MsaG011224 MtrunA17_Chr3g0099411 42.400 125 62 2 8 125 5 126 8.65e-31 111
MsaG011224 MtrunA17_Chr1g0188671 36.571 175 101 2 2 169 37 208 8.84e-31 112
MsaG011224 MtrunA17_Chr1g0187361 36.471 170 96 2 8 169 5 170 1.65e-30 111
MsaG011224 MtrunA17_Chr5g0419601 34.524 168 100 2 8 168 5 169 5.17e-30 109
MsaG011224 MtrunA17_Chr5g0422421 36.158 177 91 4 8 171 5 172 8.73e-30 109
MsaG011224 MtrunA17_Chr2g0300441 39.634 164 88 4 8 164 5 164 1.37e-29 108
MsaG011224 MtrunA17_Chr2g0317481 34.483 174 102 3 8 173 5 174 8.49e-29 106
MsaG011224 MtrunA17_Chr2g0317451 34.884 172 100 3 8 171 5 172 9.05e-29 106
MsaG011224 MtrunA17_Chr4g0074101 41.481 135 75 3 11 142 1 134 2.37e-26 99.4
MsaG011224 MtrunA17_Chr2g0300421 40.945 127 65 2 8 127 5 128 7.54e-26 97.4
MsaG011224 MtrunA17_Chr5g0422941 33.333 168 108 2 8 171 5 172 1.26e-25 98.6
MsaG011224 MtrunA17_Chr8g0345001 36.875 160 94 3 5 161 15 170 1.23e-24 94.4
MsaG011224 MtrunA17_Chr1g0169761 45.455 99 52 1 11 107 1 99 2.10e-24 94.0
MsaG011224 MtrunA17_Chr8g0376821 41.964 112 63 1 11 120 1 112 2.91e-24 93.6
MsaG011224 MtrunA17_Chr8g0356071 38.583 127 74 2 11 134 1 126 3.30e-23 90.1
MsaG011224 MtrunA17_Chr1g0175611 38.655 119 71 1 11 127 1 119 4.72e-22 87.4
MsaG011224 MtrunA17_Chr1g0180591 48.810 84 41 1 11 94 1 82 6.30e-22 87.4
MsaG011224 MtrunA17_Chr7g0238991 38.889 144 75 5 29 164 38 176 1.49e-21 87.8
MsaG011224 MtrunA17_Chr1g0175601 52.857 70 33 0 11 80 1 70 3.66e-21 85.5
MsaG011224 MtrunA17_Chr3g0089151 41.803 122 58 5 8 121 5 121 5.60e-21 83.6
MsaG011224 MtrunA17_Chr8g0357771 41.414 99 56 1 11 107 1 99 1.22e-20 84.0
MsaG011224 MtrunA17_Chr4g0052061 50.000 72 36 0 11 82 1 72 3.39e-20 82.4
MsaG011224 MtrunA17_Chr3g0093131 36.232 138 83 2 29 161 36 173 3.61e-20 83.2
MsaG011224 MtrunA17_Chr4g0052081 41.000 100 52 2 11 104 1 99 6.43e-20 82.0
MsaG011224 MtrunA17_Chr3g0097101 36.364 121 67 3 8 127 13 124 1.07e-18 80.5
MsaG011224 MtrunA17_Chr3g0111841 52.542 59 28 0 18 76 2 60 2.30e-18 75.1
MsaG011224 MtrunA17_Chr1g0187351 50.000 64 32 0 21 84 1 64 5.15e-18 74.3
MsaG011224 MtrunA17_Chr1g0173161 53.030 66 31 0 11 76 1 66 1.13e-17 73.6
MsaG011224 MtrunA17_Chr8g0351051 50.725 69 34 0 11 79 1 69 2.70e-17 76.6
MsaG011224 MtrunA17_Chr1g0159661 30.247 162 101 3 11 169 1 153 3.52e-17 75.1
MsaG011224 MtrunA17_Chr3g0111831 48.485 66 34 0 19 84 11 76 3.52e-17 72.4
MsaG011224 MtrunA17_Chr8g0380021 44.828 87 47 1 6 92 13 98 3.54e-17 76.3
MsaG011224 MtrunA17_Chr3g0077501 33.571 140 80 4 11 150 1 127 3.63e-17 75.9
MsaG011224 MtrunA17_Chr1g0204111 33.735 166 100 4 6 168 12 170 3.70e-17 76.3
MsaG011224 MtrunA17_Chr4g0020221 46.835 79 42 0 11 89 1 79 5.49e-17 75.9
MsaG011224 MtrunA17_Chr3g0142191 36.076 158 80 7 11 162 1 143 7.23e-17 75.1
MsaG011224 MtrunA17_Chr3g0134451 35.417 144 69 5 11 133 1 141 1.66e-16 75.5
MsaG011224 MtrunA17_Chr2g0284911 39.560 91 55 0 2 92 7 97 3.41e-16 73.9
MsaG011224 MtrunA17_Chr4g0061671 33.099 142 77 4 11 150 1 126 3.60e-16 72.4
MsaG011224 MtrunA17_Chr5g0425191 47.222 72 36 1 11 80 1 72 4.67e-16 70.1
MsaG011224 MtrunA17_Chr5g0412461 35.833 120 73 2 11 126 1 120 4.91e-16 72.8
MsaG011224 MtrunA17_Chr3g0125241 44.615 65 36 0 11 75 26 90 4.91e-16 72.4
MsaG011224 MtrunA17_Chr4g0044071 53.448 58 27 0 11 68 1 58 7.04e-16 69.7
MsaG011224 MtrunA17_Chr5g0404951 39.604 101 54 2 11 104 1 101 8.74e-16 72.4
MsaG011224 MtrunA17_Chr5g0427401 43.478 69 39 0 11 79 1 69 8.86e-16 72.0
MsaG011224 MtrunA17_Chr2g0308251 46.377 69 37 0 11 79 1 69 1.45e-15 68.2
MsaG011224 MtrunA17_Chr5g0427921 46.667 60 32 0 11 70 1 60 1.77e-15 67.4
MsaG011224 MtrunA17_Chr2g0279821 45.070 71 39 0 11 81 1 71 2.05e-15 71.2
MsaG011224 MtrunA17_Chr4g0049541 45.070 71 39 0 11 81 1 71 2.46e-15 70.9
MsaG011224 MtrunA17_Chr4g0057151 39.130 115 60 3 11 119 1 111 2.63e-15 70.5
MsaG011224 MtrunA17_Chr6g0474371 45.714 70 37 1 11 79 1 70 2.86e-15 70.1
MsaG011224 MtrunA17_Chr7g0220111 54.386 57 26 0 11 67 1 57 3.39e-15 70.9
MsaG011224 MtrunA17_Chr7g0246381 49.206 63 32 0 11 73 1 63 3.42e-15 67.0
MsaG011224 MtrunA17_Chr4g0049901 32.955 176 106 4 11 176 27 200 3.43e-15 70.9
MsaG011224 MtrunA17_Chr8g0351041 36.607 112 68 1 11 119 1 112 3.64e-15 69.3
MsaG011224 MtrunA17_Chr8g0377561 54.386 57 26 0 11 67 1 57 4.16e-15 67.4
MsaG011224 MtrunA17_Chr6g0455511 48.611 72 36 1 11 81 1 72 4.43e-15 70.9
MsaG011224 MtrunA17_Chr5g0420091 52.632 57 27 0 11 67 1 57 4.68e-15 70.1
MsaG011224 MtrunA17_Chr5g0412271 54.386 57 26 0 11 67 1 57 5.57e-15 70.1
MsaG011224 MtrunA17_Chr3g0122251 56.140 57 25 0 11 67 1 57 6.67e-15 70.1
MsaG011224 MtrunA17_Chr7g0246431 45.205 73 40 0 11 83 1 73 7.41e-15 69.3
MsaG011224 MtrunA17_Chr8g0351031 54.386 57 26 0 11 67 1 57 9.95e-15 69.3
MsaG011224 MtrunA17_Chr2g0302091 34.659 176 97 5 5 176 35 196 1.03e-14 68.9
MsaG011224 MtrunA17_Chr1g0164791 44.000 75 40 1 11 83 1 75 2.43e-14 68.6
MsaG011224 MtrunA17_Chr4g0061691 44.286 70 38 1 11 79 1 70 3.81e-14 67.8
MsaG011224 MtrunA17_Chr5g0411691 42.029 69 40 0 11 79 1 69 4.43e-14 67.8
MsaG011224 MtrunA17_Chr8g0366231 50.000 58 29 0 11 68 1 58 4.81e-14 67.8
MsaG011224 MtrunA17_Chr5g0420081 49.123 57 29 0 11 67 1 57 8.17e-14 67.0
MsaG011224 MtrunA17_Chr4g0018421 27.389 157 104 3 11 164 1 150 1.53e-13 65.9
MsaG011224 MtrunA17_Chr3g0111931 46.429 56 30 0 25 80 3 58 4.68e-13 62.4
MsaG011224 MtrunA17_Chr7g0220121 41.429 70 40 1 11 79 1 70 1.36e-12 63.9
MsaG011224 MtrunA17_Chr4g0060841 50.943 53 26 0 11 63 1 53 2.13e-12 63.9
MsaG011224 MtrunA17_Chr1g0166611 38.384 99 56 2 25 122 19 113 2.33e-12 61.2
MsaG011224 MtrunA17_Chr5g0417661 45.283 53 29 0 11 63 56 108 3.88e-12 60.5
MsaG011224 MtrunA17_Chr1g0212151 25.714 140 100 2 11 150 1 136 7.32e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011224 AT5G60440.1 38.608 158 90 2 8 158 3 160 1.61e-31 115
MsaG011224 AT2G24840.1 37.342 158 94 3 10 162 61 218 2.18e-28 106
MsaG011224 AT1G65360.1 35.758 165 103 2 8 169 3 167 7.58e-27 101
MsaG011224 AT1G01530.1 37.500 168 94 4 8 168 3 166 1.12e-24 96.7
MsaG011224 AT2G34440.1 36.735 147 81 4 11 150 1 142 2.74e-23 90.9
MsaG011224 AT4G36590.1 34.118 170 84 4 12 162 7 167 1.86e-22 90.9
MsaG011224 AT3G66656.1 42.400 125 56 3 11 123 1 121 1.70e-21 86.7
MsaG011224 AT1G28460.1 35.503 169 94 4 8 165 4 168 2.07e-21 86.3
MsaG011224 AT1G29962.1 34.302 172 95 5 8 165 4 171 2.32e-20 84.0
MsaG011224 AT2G42830.1 39.062 128 62 4 4 127 9 124 2.69e-20 85.1
MsaG011224 AT2G42830.2 39.062 128 62 4 4 127 9 124 3.06e-20 84.7
MsaG011224 AT5G10140.2 36.420 162 76 6 11 163 1 144 1.05e-19 81.6
MsaG011224 AT5G10140.4 36.145 166 79 6 11 167 1 148 1.36e-19 81.6
MsaG011224 AT4G09960.2 33.813 139 79 4 11 149 1 126 1.69e-19 82.4
MsaG011224 AT4G09960.6 33.813 139 79 4 11 149 2 127 1.75e-19 82.4
MsaG011224 AT4G09960.1 33.813 139 79 4 11 149 1 126 1.83e-19 82.4
MsaG011224 AT5G10140.1 36.420 162 76 6 11 163 1 144 1.99e-19 81.6
MsaG011224 AT4G09960.3 32.653 147 86 4 3 149 19 152 2.07e-19 82.8
MsaG011224 AT4G09960.5 33.813 139 79 4 11 149 11 136 2.16e-19 82.4
MsaG011224 AT5G10140.3 36.585 164 73 7 11 163 1 144 2.89e-19 80.9
MsaG011224 AT3G58780.5 39.167 120 57 4 9 124 20 127 7.27e-19 81.3
MsaG011224 AT3G58780.1 39.167 120 57 4 9 124 14 121 7.81e-19 81.3
MsaG011224 AT3G58780.4 39.167 120 57 4 9 124 14 121 8.95e-19 81.6
MsaG011224 AT5G20240.2 41.525 118 64 4 11 125 1 116 1.46e-18 78.2
MsaG011224 AT5G20240.1 36.364 143 84 5 11 148 1 141 1.60e-18 79.3
MsaG011224 AT3G04100.1 29.375 160 103 3 8 158 10 168 3.23e-18 78.6
MsaG011224 AT4G09960.4 33.813 139 79 4 11 149 96 221 3.67e-18 80.5
MsaG011224 AT1G28450.1 33.529 170 95 5 8 163 4 169 4.06e-18 77.8
MsaG011224 AT3G57230.2 42.353 85 47 1 11 93 1 85 7.30e-18 76.3
MsaG011224 AT4G22950.2 37.273 110 68 1 11 119 1 110 1.90e-17 75.9
MsaG011224 AT1G77950.3 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG011224 AT1G77950.2 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG011224 AT1G77950.1 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG011224 AT1G77950.4 49.296 71 35 1 11 80 1 71 2.06e-17 77.4
MsaG011224 AT3G58780.2 38.136 118 54 4 9 124 14 114 2.70e-17 77.0
MsaG011224 AT3G57230.1 42.353 85 47 1 11 93 1 85 3.14e-17 76.6
MsaG011224 AT3G57230.4 42.353 85 47 1 11 93 1 85 3.14e-17 76.6
MsaG011224 AT3G54340.1 53.226 62 29 0 11 72 1 62 3.63e-17 76.3
MsaG011224 AT5G62165.17 46.835 79 42 0 11 89 1 79 3.83e-17 74.7
MsaG011224 AT5G62165.12 46.835 79 42 0 11 89 1 79 3.83e-17 74.7
MsaG011224 AT5G62165.11 46.835 79 42 0 11 89 1 79 3.83e-17 74.7
MsaG011224 AT5G62165.14 46.835 79 42 0 11 89 1 79 3.85e-17 73.2
MsaG011224 AT1G72350.1 28.834 163 87 3 12 174 43 176 3.88e-17 76.3
MsaG011224 AT1G22130.1 56.897 58 25 0 11 68 1 58 4.01e-17 77.8
MsaG011224 AT1G77980.1 49.296 71 35 1 11 80 1 71 5.04e-17 77.4
MsaG011224 AT4G22950.3 37.273 110 68 1 11 119 1 110 6.47e-17 75.5
MsaG011224 AT4G22950.1 37.273 110 68 1 11 119 1 110 6.47e-17 75.5
MsaG011224 AT5G62165.6 46.835 79 42 0 11 89 1 79 6.47e-17 73.9
MsaG011224 AT5G62165.9 46.835 79 42 0 11 89 1 79 6.47e-17 73.9
MsaG011224 AT5G62165.7 46.835 79 42 0 11 89 1 79 6.47e-17 73.9
MsaG011224 AT5G62165.8 46.835 79 42 0 11 89 1 79 6.47e-17 73.9
MsaG011224 AT5G62165.13 46.835 79 42 0 11 89 1 79 6.47e-17 73.9
MsaG011224 AT5G51870.5 46.835 79 42 0 8 86 21 99 8.93e-17 74.7
MsaG011224 AT5G51860.2 47.368 76 40 0 11 86 1 76 1.33e-16 74.3
MsaG011224 AT5G62165.3 46.835 79 42 0 11 89 1 79 1.40e-16 74.3
MsaG011224 AT5G62165.1 46.835 79 42 0 11 89 1 79 1.40e-16 74.3
MsaG011224 AT5G62165.2 46.835 79 42 0 11 89 1 79 1.40e-16 74.3
MsaG011224 AT5G62165.10 46.835 79 42 0 11 89 1 79 1.49e-16 73.9
MsaG011224 AT5G62165.4 46.835 79 42 0 11 89 1 79 1.49e-16 73.9
MsaG011224 AT5G13790.2 44.706 85 45 1 11 95 1 83 1.80e-16 75.1
MsaG011224 AT5G51860.1 47.368 76 40 0 11 86 1 76 1.95e-16 73.9
MsaG011224 AT3G57390.3 44.048 84 47 0 11 94 1 84 2.13e-16 74.3
MsaG011224 AT2G45660.2 38.793 116 59 3 11 119 1 111 2.17e-16 72.8
MsaG011224 AT4G18960.1 51.351 74 28 1 12 85 18 83 2.41e-16 74.7
MsaG011224 AT5G23260.4 32.353 170 95 5 6 172 12 164 2.62e-16 74.7
MsaG011224 AT5G13790.1 50.725 69 34 0 11 79 1 69 2.87e-16 74.7
MsaG011224 AT4G24540.1 31.953 169 97 4 11 167 1 163 2.88e-16 73.9
MsaG011224 AT5G51870.1 47.368 76 40 0 11 86 1 76 2.91e-16 73.6
MsaG011224 AT5G51870.2 47.368 76 40 0 11 86 1 76 3.15e-16 72.8
MsaG011224 AT2G45650.1 49.275 69 35 0 11 79 1 69 3.46e-16 73.9
MsaG011224 AT3G58780.3 34.307 137 65 4 9 124 14 146 5.23e-16 73.9
MsaG011224 AT5G23260.1 46.753 77 39 1 6 80 12 88 5.25e-16 73.9
MsaG011224 AT3G57390.1 44.048 84 47 0 11 94 1 84 5.27e-16 73.6
MsaG011224 AT4G37940.1 44.000 75 42 0 11 85 1 75 5.42e-16 73.2
MsaG011224 AT4G37940.4 44.000 75 42 0 11 85 1 75 5.57e-16 72.8
MsaG011224 AT5G51870.4 47.368 76 40 0 11 86 1 76 5.62e-16 72.8
MsaG011224 AT5G51870.3 46.753 77 41 0 10 86 10 86 6.63e-16 72.8
MsaG011224 AT4G37940.3 44.000 75 42 0 11 85 1 75 8.53e-16 71.6
MsaG011224 AT2G45660.1 38.793 116 59 3 11 119 1 111 8.79e-16 72.4
MsaG011224 AT5G23260.3 29.936 157 95 3 11 163 1 146 1.23e-15 72.4
MsaG011224 AT3G61120.1 45.070 71 39 0 11 81 1 71 1.43e-15 72.4
MsaG011224 AT5G23260.2 32.727 165 91 5 11 172 1 148 2.21e-15 72.0
MsaG011224 AT2G22540.3 37.815 119 70 3 11 125 1 119 2.96e-15 71.2
MsaG011224 AT2G22540.1 37.815 119 70 3 11 125 1 119 2.96e-15 71.2
MsaG011224 AT4G11880.2 51.613 62 30 0 11 72 1 62 3.05e-15 70.1
MsaG011224 AT4G11880.3 51.613 62 30 0 11 72 1 62 3.05e-15 70.1
MsaG011224 AT2G22630.1 48.000 75 31 1 11 85 1 67 3.50e-15 70.9
MsaG011224 AT2G22630.2 48.000 75 31 1 11 85 1 67 3.50e-15 70.9
MsaG011224 AT5G65070.4 44.286 70 38 1 11 79 1 70 4.23e-15 68.9
MsaG011224 AT5G65070.1 44.286 70 38 1 11 79 1 70 5.55e-15 70.1
MsaG011224 AT2G03710.3 54.386 57 26 0 11 67 1 57 7.06e-15 69.3
MsaG011224 AT4G11880.4 55.172 58 26 0 11 68 1 58 7.93e-15 70.1
MsaG011224 AT4G11880.1 55.172 58 26 0 11 68 1 58 7.93e-15 70.1
MsaG011224 AT1G24260.1 54.386 57 26 0 11 67 1 57 9.98e-15 70.1
MsaG011224 AT1G24260.2 54.386 57 26 0 11 67 1 57 1.01e-14 70.1
MsaG011224 AT2G03710.1 54.386 57 26 0 11 67 1 57 1.04e-14 70.1
MsaG011224 AT2G22540.2 54.545 55 25 0 11 65 1 55 1.05e-14 69.7
MsaG011224 AT1G24260.3 54.386 57 26 0 11 67 1 57 1.10e-14 69.7
MsaG011224 AT5G15800.1 54.386 57 26 0 11 67 1 57 1.13e-14 70.1
MsaG011224 AT2G03710.2 54.386 57 26 0 11 67 1 57 1.18e-14 70.1
MsaG011224 AT1G47760.1 48.485 66 34 0 11 76 1 66 1.36e-14 68.6
MsaG011224 AT5G65050.2 49.180 61 31 0 11 71 1 61 1.56e-14 68.2
MsaG011224 AT5G65070.2 44.286 70 38 1 11 79 1 70 1.58e-14 69.3
MsaG011224 AT3G02310.2 54.386 57 26 0 11 67 1 57 1.83e-14 68.6
MsaG011224 AT5G65070.5 44.286 70 38 1 11 79 1 70 2.24e-14 68.6
MsaG011224 AT5G65070.3 45.312 64 35 0 11 74 1 64 2.32e-14 68.9
MsaG011224 AT5G15800.2 54.386 57 26 0 11 67 1 57 2.45e-14 69.3
MsaG011224 AT3G02310.1 54.386 57 26 0 11 67 1 57 3.79e-14 68.6
MsaG011224 AT5G65050.1 35.714 112 65 3 11 121 1 106 3.79e-14 67.4
MsaG011224 AT5G65050.3 49.180 61 31 0 11 71 1 61 5.48e-14 67.4
MsaG011224 AT5G65050.5 49.180 61 31 0 11 71 1 61 5.64e-14 67.0
MsaG011224 AT1G69120.2 48.276 58 30 0 11 68 1 58 6.55e-14 67.8
MsaG011224 AT5G60910.1 52.727 55 26 0 11 65 1 55 6.88e-14 67.8
MsaG011224 AT2G14210.1 48.276 58 30 0 11 68 1 58 7.40e-14 67.4
MsaG011224 AT1G26310.1 50.000 58 29 0 11 68 1 58 7.59e-14 67.8
MsaG011224 AT2G14210.2 48.276 58 30 0 11 68 1 58 1.04e-13 67.0
MsaG011224 AT5G65060.3 47.541 61 32 0 11 71 1 61 1.07e-13 66.2
MsaG011224 AT3G30260.1 49.123 57 29 0 11 67 1 57 1.20e-13 67.0
MsaG011224 AT5G65080.2 31.098 164 96 4 6 169 3 149 1.21e-13 66.6
MsaG011224 AT1G71692.1 32.000 125 82 3 11 133 1 124 1.43e-13 66.2
MsaG011224 AT5G65060.1 47.541 61 32 0 11 71 1 61 1.56e-13 65.9
MsaG011224 AT5G65060.2 47.541 61 32 0 11 71 1 61 1.70e-13 65.9
MsaG011224 AT1G69120.1 48.276 58 30 0 11 68 1 58 1.78e-13 66.6
MsaG011224 AT1G69540.1 25.414 181 113 6 11 170 1 180 4.54e-13 66.2
MsaG011224 AT5G65080.3 32.278 158 86 6 11 162 8 150 5.28e-13 64.3
MsaG011224 AT4G37435.1 49.123 57 29 0 11 67 1 57 8.16e-13 63.9
MsaG011224 AT1G69540.2 25.414 181 113 6 11 170 1 180 9.45e-13 65.5
MsaG011224 AT1G31140.1 36.538 104 64 2 11 113 1 103 6.09e-12 62.0
MsaG011224 AT1G18750.4 43.860 57 32 0 11 67 1 57 1.02e-11 62.8
MsaG011224 AT1G18750.3 43.860 57 32 0 11 67 1 57 1.25e-11 62.4
MsaG011224 AT1G18750.1 43.860 57 32 0 11 67 1 57 1.26e-11 62.4
MsaG011224 AT5G49490.1 36.047 86 51 1 1 82 34 119 1.77e-11 61.6
MsaG011224 AT2G26320.1 44.262 61 34 0 8 68 14 74 2.30e-11 58.2
MsaG011224 AT1G31140.2 38.710 93 52 2 11 98 1 93 3.40e-11 60.1
MsaG011224 AT2G03060.3 44.068 59 32 1 11 68 1 59 4.86e-11 60.8
MsaG011224 AT2G03060.7 44.068 59 32 1 11 68 1 59 4.86e-11 60.8
MsaG011224 AT2G03060.1 44.068 59 32 1 11 68 1 59 4.86e-11 60.8
MsaG011224 AT2G03060.2 44.068 59 32 1 11 68 1 59 5.54e-11 60.5

Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCAGCTTGAACAATTTA+TGG 0.161799 2:-82862533 MsaT011224.1:CDS
ACTAGAAGATGTTCAAAATT+TGG 0.191288 2:-82862611 MsaT011224.1:CDS
CTTCATCTTTAACTCGTAAA+TGG 0.226947 2:+82862507 None:intergenic
GTCCCATGTTCTTCTTTCTT+TGG 0.246339 2:+82862950 None:intergenic
ATCCAATTTCACCATGGATA+TGG 0.282644 2:-82862977 None:intergenic
CCTTCTTGATCTCAATCTTC+TGG 0.317157 2:+82862926 None:intergenic
TGAGAAAGTGACAAGTTTGT+TGG 0.353316 2:+82862891 None:intergenic
GGTGACAAACTCTACTGTTT+TGG 0.353846 2:-82862784 MsaT011224.1:CDS
AAAGATGAAGCTTGTTGAAA+GGG 0.440736 2:-82862494 MsaT011224.1:CDS
CAAAGGAACCACTGAGTTTG+AGG 0.448124 2:-82862725 MsaT011224.1:CDS
TTCCTTTGACGTAGCTATTG+AGG 0.468952 2:+82862740 None:intergenic
TAAAGATGAAGCTTGTTGAA+AGG 0.488937 2:-82862495 MsaT011224.1:CDS
TTGAGGACAACGTTAGTGTC+AGG 0.500402 2:+82862757 None:intergenic
AGATTACAATAGACAATATG+AGG 0.522743 2:-82862668 MsaT011224.1:CDS
TCTTTGGTTAACCATATCCA+TGG 0.535708 2:+82862966 None:intergenic
GGCGCAAAAGACGTTGGAGA+TGG 0.554315 2:-82862644 MsaT011224.1:CDS
CTATTGTAATCTTTGCAAGT+CGG 0.565418 2:+82862679 None:intergenic
ACCAGGGGAAAACACAATGA+TGG 0.576978 2:+82862804 None:intergenic
GTCCTCAATAGCTACGTCAA+AGG 0.585254 2:-82862742 MsaT011224.1:CDS
CTTTGAATCCTCAAACTCAG+TGG 0.591334 2:+82862717 None:intergenic
AACAGTAGAGTTTGTCACCA+GGG 0.615040 2:+82862788 None:intergenic
TGAGGAGGCGCAAAAGACGT+TGG 0.623986 2:-82862650 MsaT011224.1:CDS
CCAGAAGATTGAGATCAAGA+AGG 0.640828 2:-82862926 MsaT011224.1:CDS
AACCAAAGAAAGAAGAACAT+GGG 0.647859 2:-82862952 MsaT011224.1:CDS
TAACCAAAGAAAGAAGAACA+TGG 0.648089 2:-82862953 MsaT011224.1:CDS
AAACAGTAGAGTTTGTCACC+AGG 0.654743 2:+82862787 None:intergenic
ACAGTAGAGTTTGTCACCAG+GGG 0.676336 2:+82862789 None:intergenic
TTACAATAGACAATATGAGG+AGG 0.689166 2:-82862665 MsaT011224.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 82862456 82862986 82862456 ID=MsaG011224
Chr2 mRNA 82862456 82862986 82862456 ID=MsaT011224.1;Parent=MsaG011224
Chr2 exon 82862456 82862986 82862456 ID=MsaT011224.1.exon1;Parent=MsaT011224.1
Chr2 CDS 82862456 82862986 82862456 ID=cds.MsaT011224.1;Parent=MsaT011224.1
Gene Sequence

>MsaT011224.1

ATGGATATGGTTAACCAAAGAAAGAAGAACATGGGACGCCAGAAGATTGAGATCAAGAAGGTTGAGAAAGATTCCAACAAACTTGTCACTTTCTCAAAAAGAAGACAAGGTTTATTCAGAAAAGCAAGCGAACTTTGTGTTTTATGTGATGTTCATGCAGCCATCATTGTGTTTTCCCCTGGTGACAAACTCTACTGTTTTGGTCAACCTGACACTAACGTTGTCCTCAATAGCTACGTCAAAGGAACCACTGAGTTTGAGGATTCAAAGTCAACTGAAAATTTTCCGACTTGCAAAGATTACAATAGACAATATGAGGAGGCGCAAAAGACGTTGGAGATGGAAAAGAAGAAACTAGAAGATGTTCAAAATTTGGCTAAGATTTTCAGCAAGGGTGATTGGTGGAATGATTCAATTGATGATATGACTAGTGATCAGCTTGAACAATTTATGGTGTCCATTTACGAGTTAAAGATGAAGCTTGTTGAAAGGGCTGATGAACTTGTCATGAAGCAAAGTGTCATGCCATAG
Protein sequence

>MsaT011224.1

MDMVNQRKKNMGRQKIEIKKVEKDSNKLVTFSKRRQGLFRKASELCVLCDVHAAIIVFSPGDKLYCFGQPDTNVVLNSYVKGTTEFEDSKSTENFPTCKDYNRQYEEAQKTLEMEKKKLEDVQNLAKIFSKGDWWNDSIDDMTSDQLEQFMVSIYELKMKLVERADELVMKQSVMP*