AlfalfaGEDB | MsaG011240

M. sativa ssp. caerulea / MsaG011240

KEGG: -
GO: GO:0001101 GO:0001653 GO:0002376 GO:0003674 GO:0003824 GO:0004383 GO:0004672 GO:0004888 GO:0005488 GO:0005575 GO:0005576 GO:0005623 GO:0005886 GO:0005911 GO:0006139 GO:0006163 GO:0006164 GO:0006182 GO:0006464 GO:0006468 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009187 GO:0009190 GO:0009259 GO:0009260 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009719 GO:0009725 GO:0009753 GO:0009975 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016829 GO:0016849 GO:0018130 GO:0019199 GO:0019438 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030054 GO:0033218 GO:0034641 GO:0034654 GO:0036211 GO:0038023 GO:0042221 GO:0042277 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044464 GO:0045087 GO:0046068 GO:0046390 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0052652 GO:0055044 GO:0055086 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:0098542 GO:0140096 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700
PFAM: PF08263.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011240	XP_013465647.1	92.651	830	53	5	1	824	1	828	0.0	1485
MsaG011240	XP_013465647.1	95.763	118	5	0	823	940	963	1080	3.44e-60	235

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011240	sp\|P93194\|RPK1_IPONI	48.826	852	403	9	11	835	18	863	0.0	721
MsaG011240	sp\|P93194\|RPK1_IPONI	64.486	107	38	0	823	929	987	1093	4.53e-35	148

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011240	tr\|A0A072VDZ6\|A0A072VDZ6_MEDTR	92.651	830	53	5	1	824	1	828	0.0	1485
MsaG011240	tr\|A0A072VDZ6\|A0A072VDZ6_MEDTR	95.763	118	5	0	823	940	963	1080	1.64e-60	235

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG011240	0.808097	6.229932e-50	1.016215e-47
MsaG000113	MsaG011240	0.829320	9.864830e-55	2.799771e-52
MsaG000140	MsaG011240	0.808353	5.499238e-50	9.025337e-48
MsaG000164	MsaG011240	0.832208	1.948354e-55	6.010056e-53
MsaG000292	MsaG011240	0.803093	6.912776e-49	1.002748e-46
MsaG000372	MsaG011240	0.806208	1.558507e-49	2.430652e-47
MsaG000400	MsaG011240	0.800472	2.372457e-48	3.242072e-46
MsaG000490	MsaG011240	0.801317	1.597576e-48	2.225197e-46
MsaG000496	MsaG011240	0.814753	2.268142e-51	4.357296e-49
MsaG000530	MsaG011240	0.828451	1.597319e-54	4.423977e-52

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011240	MtrunA17_Chr2g0334191	92.651	830	53	5	1	824	1	828	0.0	1485
MsaG011240	MtrunA17_Chr2g0334191	95.763	118	5	0	823	940	963	1080	3.17e-64	235
MsaG011240	MtrunA17_Chr1g0197051	58.817	862	311	11	7	840	11	856	0.0	919
MsaG011240	MtrunA17_Chr1g0197051	63.551	107	36	2	825	928	981	1087	9.67e-35	143
MsaG011240	MtrunA17_Chr5g0440211	55.267	655	264	10	204	838	94	739	0.0	643
MsaG011240	MtrunA17_Chr5g0440211	35.536	560	285	7	4	489	13	570	1.90e-80	283
MsaG011240	MtrunA17_Chr5g0440211	52.830	106	46	2	823	924	870	975	2.22e-23	107
MsaG011240	MtrunA17_Chr5g0440211	36.410	195	122	2	491	684	69	262	3.40e-20	96.7
MsaG011240	MtrunA17_Chr5g0440221	53.120	689	278	8	206	856	95	776	0.0	635
MsaG011240	MtrunA17_Chr5g0440221	35.219	548	278	9	16	489	25	569	6.74e-76	272

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011240	AT1G73080.1	49.112	845	393	9	10	822	22	861	0.0	721
MsaG011240	AT1G73080.1	53.153	111	47	1	825	930	999	1109	7.42e-27	119
MsaG011240	AT1G17750.1	46.108	848	430	11	1	833	7	842	0.0	671
MsaG011240	AT1G17750.1	52.727	110	48	1	825	930	966	1075	5.39e-25	112
MsaG011240	AT1G73066.1	45.813	609	274	8	3	582	12	593	1.90e-163	491
MsaG011240	AT1G73066.1	33.401	494	277	7	210	654	102	592	3.63e-65	231
MsaG011240	AT1G73066.1	33.929	448	260	4	264	681	83	524	7.78e-63	224
MsaG011240	AT1G73066.1	33.570	423	248	7	301	695	26	443	1.42e-42	165
MsaG011240	AT1G73066.1	33.234	337	215	4	86	417	264	595	1.99e-39	155
MsaG011240	AT1G73066.1	33.929	280	157	4	68	321	318	595	3.56e-31	130

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Find 229 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGACAAGTTTGATGT+GGG	0.578251	2:+83077844	MsaT011240.1:CDS
AAAGGTTGAGAGAGACTACA+CGG	0.709390	2:-83076409	None:intergenic
AACAAAACAGTTAATCACAA+AGG	0.644847	2:+83078381	MsaT011240.1:CDS
AACCAGTAAGTTGGTTAAAA+TGG	0.233226	2:-83076646	None:intergenic
AAGACTATGAATCTTCCATA+TGG	0.507784	2:-83077254	None:intergenic
AAGATGCACAACTCTAAGAA+GGG	0.649992	2:+83077549	MsaT011240.1:CDS
AAGATGGTTTAGACTAGTGT+GGG	0.542501	2:-83076819	None:intergenic
AAGATTGGGTGGGAGGTTGC+CGG	0.420628	2:-83077452	None:intergenic
AAGCAAAACAACAGATATTG+AGG	0.503045	2:-83078442	None:intergenic
AAGGTGTAGATGATTAAGGT+TGG	0.582186	2:-83077053	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	83076221	83079534	83076221	ID=MsaG011240
Chr2	mRNA	83076221	83079534	83076221	ID=MsaT011240.1;Parent=MsaG011240
Chr2	exon	83076221	83078693	83076221	ID=MsaT011240.1.exon1;Parent=MsaT011240.1
Chr2	CDS	83076221	83078693	83076221	ID=cds.MsaT011240.1;Parent=MsaT011240.1
Chr2	exon	83079185	83079534	83079185	ID=MsaT011240.1.exon2;Parent=MsaT011240.1
Chr2	CDS	83079185	83079534	83079185	ID=cds.MsaT011240.1;Parent=MsaT011240.1

Gene Sequence

>MsaT011240.1

ATGAGACTTGTTGTTCTCTTCTTATTGCATGTGTATTCTGTTTGTGCACTCAACTCAGATGGGGTAGCACTCTTGTCATTCATGTCCCACTGGACATCAGTAGTTCCTCCTTCCATAAACTCAACATGGATTCCATCTCATTCAACACCATGCTCATGGGAAGGTGTCAAATGCAACCCTTCCACTCACCGTGTAGTCTCTCTCAACCTTTCCTATTGTGACATTCATGCTCCACTACGACCTGAAATTGCTAATTGCACACACCTCACCTACTTAGACCTTACTTCTAACTACTTTACCGGCCAAATACCTTACTCATTCGCTAACCTCCACAAACTCACCTATCTCAGCCTTTCTGTTAATCTACTCACTGGTCCATTCCCCCATTTCTTAACTCAAATCCCTCACCTTCACTTTCTTGATCTCCATTTTAACCAACTTACTGGTTCCATTCCAACTACTATTGCCAACATCACTCAACTTCGCTACTTGTATCTCCAAGAAAACCAATTCTCCGGTATAATCCCATCATCCATTGGGAACTGTACTCAACTGCAAGACTTGTATTTCAATGAAAATCAGTTTCAGGGTGTCATCCCCCACACTAGTCTAAACCATCTTCTTCGGTTAAATCTTGCCTCCAATAAACTAACAGGTATCATTCCATTCGGTTCTAGTTCCGCTTGTCAAAATTTACTGTTTTTGGATATTTCATTCAATGCTTTTAGTGGAGGCATCCCCTCAGCCATTGGGAATTGTACTGCTTTATCACAGTTTGCTGCTGTTGAGTCTAACTTGGTTGGAACTATTCCATCCTCCATCGGTCTGCTCACCAACCTTAATCATCTACACCTTTCTGAGAACCATTTGTCCGGTAAAATACCTCCTGAAATAGGTAACTGCAAGTCTTTGAATGGATTGCATTTGTATTCCAATCGACTTGAGGGAAACATTCCAAGTGAATTAGGAAAGCTGAGTAAACTGCAGGACCTTGAATTGTTTTCCAATCAATTGAGTGGTGAAATTCCACTTGCCATATGGAAGATTCATAGTCTTGAGTATCTGCTTGTGTATAATAACAGTCTTTCCGGAGAACTTCCTGTGGAGATGACAGAGCTCAAGAACCTCAAAAACATCTCATTGTTTAACAACATGTTCTCTGGAGTCATACCTCATAGTTTGGGAATCAATAGCAGTTTGTTGCAATTAGACTTTATAAATAATAGGTTCACCGGCAACCTCCCACCCAATCTTTGTTTTCGCAGAAAGCTAAGCGTTTTGAATATGGGCATCAATCAACTTCAAGGTCGCATACCTCTTGATGTTGGAAGATGCACAACTCTAAGAAGGGTCATTCTTAAACAAAACAACTTTACTGGGCCTCTTCCTCATTTCGAAACTAATCCCAATCTGTTATTCATGGAGATCAGCAACAACAAAATCAACGGAACAATTCCATCAAGTTTAGGAAACTGCACAAATCTAACAGATTTAATTTTGTCAAGGAACAAATTTAGTGGGCGCATACCACAAGAGTTAGGAAACCTTGTGAATCTTCGGACTTTGATTCTTGATCACAACAACTTAGAAGGACCTTTGCCATTTCAGCTGTCAAATTGTACCAAAATGGACAAGTTTGATGTGGGATTTAACTTCTTAAATGGTTCATTGCCATCAAGTTTGCAGAGGTGGACAAGGCTAAACACATTAATTTTGACTGAGAATCATTTTAGTGGCGGCATTCCAGATTTCTTGTCGGCATTCAAAGATCTTTCTGAACTAGGGCTTGGTGGCAATATGTTTGGTGGGAGAATTCCTAGATCGGTTGGGGCATTGCAGAATTTGATCTATGGTTTGAATCTAAGTTCTAATGGGCTGTTAGGCGACATTCCTGTGGAAATTGGAAAACTGAAAACTTTGCAATTGCTGGATCTATCTCAGAACAATTTGACAGGAAGCATACAAGTTCTTGATGACCTCCCTTCATTGGTTGAAATCAATATTTCATACAATTCTTTTCAGGGTCCTGTTCCGAAGATGCTAATGAAGCTGCTCAATTCTCCCCTGTCATCATTTTTGGGGAATCCTGGGCTATGTATCAGTTGCTCACCATCTGATAGCTTGGTTTGCTCCAAAATCGGATATCTAAAACCATGTGATAACAAAACAGTTAATCACAAAGGCCTCAGTAAAATTGCAATTGTGATGATAGCTCTAGGATCCTCAATATCTGTTGTTTTGCTTCTTCTGGGATTAGTTTATATCTTTTCTTATGGCAGAAAATCTAAGCAGCAAGTCCATTTCACCGATAATGGAGGTCCTTCGTACCTTCTTAACAAAGTCATGGAGGCTACATCGAACCTAAGTGATCGGTATATTATTGGAAGAGGAGCCCATGGAGTTGTTTATAAAGCCCTTGTAAGTCAAGACAAAGCGTTTGCTGTAAAGAAGCTGGCATTTGCTGCCAGCAAAGAGAATGCTTATAGAACAGTAAGTAGTAGGGAGTGTGATGTGTACAGCTATGGAGTAGTTTTGCTTGAGCTGATAACCAGAAAGAAGGTATCAGATCCGTCATTTATGGAGGGTACTGATTTAGTAGGTTGGGTTAGATTGATGTGGAGTGAAACAGGAGAAATTAATCAAATTGTTGATTCAAGCCTTGTAAATGAATTTCTAGATACCAATATAATGGAAAATGTTACCAAAGTGCTTATGCTGGCTTTGACATGTACTGAGAAGGATCCACGCAAGAGGCCAACAATGACAGATGTTACCAAGCAATTATCAGATTCCAATCCACAGAAAATAAGTAAGAAGGGCTAG

Protein sequence

>MsaT011240.1

MRLVVLFLLHVYSVCALNSDGVALLSFMSHWTSVVPPSINSTWIPSHSTPCSWEGVKCNPSTHRVVSLNLSYCDIHAPLRPEIANCTHLTYLDLTSNYFTGQIPYSFANLHKLTYLSLSVNLLTGPFPHFLTQIPHLHFLDLHFNQLTGSIPTTIANITQLRYLYLQENQFSGIIPSSIGNCTQLQDLYFNENQFQGVIPHTSLNHLLRLNLASNKLTGIIPFGSSSACQNLLFLDISFNAFSGGIPSAIGNCTALSQFAAVESNLVGTIPSSIGLLTNLNHLHLSENHLSGKIPPEIGNCKSLNGLHLYSNRLEGNIPSELGKLSKLQDLELFSNQLSGEIPLAIWKIHSLEYLLVYNNSLSGELPVEMTELKNLKNISLFNNMFSGVIPHSLGINSSLLQLDFINNRFTGNLPPNLCFRRKLSVLNMGINQLQGRIPLDVGRCTTLRRVILKQNNFTGPLPHFETNPNLLFMEISNNKINGTIPSSLGNCTNLTDLILSRNKFSGRIPQELGNLVNLRTLILDHNNLEGPLPFQLSNCTKMDKFDVGFNFLNGSLPSSLQRWTRLNTLILTENHFSGGIPDFLSAFKDLSELGLGGNMFGGRIPRSVGALQNLIYGLNLSSNGLLGDIPVEIGKLKTLQLLDLSQNNLTGSIQVLDDLPSLVEINISYNSFQGPVPKMLMKLLNSPLSSFLGNPGLCISCSPSDSLVCSKIGYLKPCDNKTVNHKGLSKIAIVMIALGSSISVVLLLLGLVYIFSYGRKSKQQVHFTDNGGPSYLLNKVMEATSNLSDRYIIGRGAHGVVYKALVSQDKAFAVKKLAFAASKENAYRTVSSRECDVYSYGVVLLELITRKKVSDPSFMEGTDLVGWVRLMWSETGEINQIVDSSLVNEFLDTNIMENVTKVLMLALTCTEKDPRKRPTMTDVTKQLSDSNPQKISKKG*