AlfalfaGEDB | MsaG011344

M. sativa ssp. caerulea / MsaG011344

KEGG: K13436
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF03358.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011344	XP_003598672.1	88.770	187	20	1	1	187	1	186	1.36e-117	345

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011344	sp\|Q9LK88\|NQR_ARATH	69.318	176	54	0	4	179	10	185	1.08e-81	247

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011344	tr\|G7IW34\|G7IW34_MEDTR	88.770	187	20	1	1	187	1	186	6.48e-118	345

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011344	MtrunA17_Chr3g0084161	88.770	187	20	1	1	187	1	186	1.25e-121	345
MsaG011344	MtrunA17_Chr3g0084221	77.095	179	41	0	1	179	1	179	1.15e-98	287
MsaG011344	MtrunA17_Chr3g0084201	72.626	179	48	1	1	179	1	178	1.62e-93	274
MsaG011344	MtrunA17_Chr3g0084191	73.684	190	42	3	1	185	1	187	2.08e-93	285
MsaG011344	MtrunA17_Chr3g0084191	93.694	111	7	0	179	289	390	500	6.30e-58	193
MsaG011344	MtrunA17_Chr8g0353131	69.101	178	55	0	2	179	3	180	5.53e-92	270
MsaG011344	MtrunA17_Chr1g0213501	83.178	107	18	0	183	289	297	403	3.50e-51	173
MsaG011344	MtrunA17_Chr7g0258951	76.636	107	23	1	183	287	260	366	2.41e-46	159
MsaG011344	MtrunA17_Chr1g0194101	79.630	108	21	1	183	289	252	359	3.88e-46	159
MsaG011344	MtrunA17_Chr1g0175731	73.832	107	28	0	183	289	264	370	2.40e-45	157

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011344	AT3G27890.1	69.318	176	54	0	4	179	10	185	1.10e-82	247
MsaG011344	AT1G48210.1	78.302	106	23	0	184	289	252	357	1.17e-52	176
MsaG011344	AT1G48210.7	78.302	106	23	0	184	289	252	357	1.17e-52	176
MsaG011344	AT1G48210.2	78.302	106	23	0	184	289	252	357	1.17e-52	176
MsaG011344	AT1G48210.3	78.302	106	23	0	184	289	252	357	1.17e-52	176
MsaG011344	AT2G43230.2	79.279	111	17	1	183	287	330	440	2.52e-48	167
MsaG011344	AT2G43230.1	79.279	111	17	1	183	287	296	406	2.66e-48	166
MsaG011344	AT2G30740.5	83.673	98	16	0	183	280	256	353	4.52e-47	161
MsaG011344	AT2G30740.2	83.673	98	16	0	183	280	256	353	4.52e-47	161
MsaG011344	AT2G30740.10	83.673	98	16	0	183	280	256	353	4.52e-47	161

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Find 70 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTACGGTTT+TGG	0.213894	3:-1585693	MsaT011344.1:CDS
AAATATCAATGTACTCGATT+TGG	0.336785	3:+1586440	None:intergenic
AACATCATCTTCGCCAAATC+GGG	0.347815	3:-1586061	MsaT011344.1:CDS
AACTCTGATCTTGAGAAAGA+AGG	0.504804	3:-1586400	MsaT011344.1:CDS
AAGCACTCCAACCACTTCTG+TGG	0.607900	3:-1585225	MsaT011344.1:CDS
AATACATCTAGGTAGAACTC+AGG	0.627908	3:+1586008	None:intergenic
AATCAATTGCATTCTTTAGC+GGG	0.429780	3:+1586168	None:intergenic
AATCGAGTACATTGATATTT+CGG	0.318748	3:-1586437	MsaT011344.1:CDS
AATGAGGCCAGTATGAAAAG+AGG	0.609156	3:+1587003	None:intergenic
ACATCATCTTCGCCAAATCG+GGG	0.637712	3:-1586060	MsaT011344.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	1585198	1587074	1585198	ID=MsaG011344
Chr3	mRNA	1585198	1587074	1585198	ID=MsaT011344.1;Parent=MsaG011344
Chr3	exon	1585198	1585317	1585198	ID=MsaT011344.1.exon6;Parent=MsaT011344.1
Chr3	CDS	1585198	1585317	1585198	ID=cds.MsaT011344.1;Parent=MsaT011344.1
Chr3	exon	1585427	1585513	1585427	ID=MsaT011344.1.exon5;Parent=MsaT011344.1
Chr3	CDS	1585427	1585513	1585427	ID=cds.MsaT011344.1;Parent=MsaT011344.1
Chr3	exon	1585611	1585740	1585611	ID=MsaT011344.1.exon4;Parent=MsaT011344.1
Chr3	CDS	1585611	1585740	1585611	ID=cds.MsaT011344.1;Parent=MsaT011344.1
Chr3	exon	1585930	1586191	1585930	ID=MsaT011344.1.exon3;Parent=MsaT011344.1
Chr3	CDS	1585930	1586191	1585930	ID=cds.MsaT011344.1;Parent=MsaT011344.1
Chr3	exon	1586305	1586496	1586305	ID=MsaT011344.1.exon2;Parent=MsaT011344.1
Chr3	CDS	1586305	1586496	1586305	ID=cds.MsaT011344.1;Parent=MsaT011344.1
Chr3	exon	1586996	1587074	1586996	ID=MsaT011344.1.exon1;Parent=MsaT011344.1
Chr3	CDS	1586996	1587074	1586996	ID=cds.MsaT011344.1;Parent=MsaT011344.1

Gene Sequence

>MsaT011344.1

ATGACAAGGGTGATTAAGATTGTTGCTCTCTCTGGTTCTCTTCGAAAAGCCTCTTTTCATACTGGCCTCATTCGTTATGCTATTGAGCTAAGCAAAAATGTTCTTGATGGTGTCCAAATCGAGTACATTGATATTTCGGACTTGCCAATGTTGAACTCTGATCTTGAGAAAGAAGGAACTTTTCCTGCTGAAGTTGAAGCTTTTCGTCAAAAGATTCTTGCAGCTGATAGTGTTCTCTTTGCTTCTCCTGAATATAACTATTCTGTCTCAGCCCCGCTAAAGAATGCAATTGATTGGGCATCAAGACCACCAAATGCATGGGCTGGTAAACCTGCTGCCATAGTAAGTGTTGGAGGAGCCTTTGGTGGAGGAAAAGCTCAACATCATCTTCGCCAAATCGGGGTTTTCCTTGATATTCATTTCATTAATAAACCTGAGTTCTACCTAGATGTATTTAAGCATCCAGAAAAATGTAACGATGATGGTGACTTGGTTGATGAAGAGATCAAGAATAGATTGGAGAAAGTTCATTTAAATGCCATGGAGCAGTTGACTGAAAAAAGTGATGTTTACGGTTTTGGCGTTATTCTTCTCGAGCTCCTTACAGGTAGGAAACCCGTTGATCATACATTGCCTCGAGGAGAACAAAATCTTGTCACATGGGCTACCCCAAGATTAAGTGAAGATAAAGTGCAAGAATGCGTCGACCCAAAACTCGAAGGAGAATATCCCCCGGTAGCAGTTGCTAAGGTTGCAGCTATAGCAGCACTGTGTGTGCAGGATGAAGCTGATTTTAGGCCCAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGTGGCCTCCCGCTCCTGAACCAGAAACTTGA

Protein sequence

>MsaT011344.1

MTRVIKIVALSGSLRKASFHTGLIRYAIELSKNVLDGVQIEYIDISDLPMLNSDLEKEGTFPAEVEAFRQKILAADSVLFASPEYNYSVSAPLKNAIDWASRPPNAWAGKPAAIVSVGGAFGGGKAQHHLRQIGVFLDIHFINKPEFYLDVFKHPEKCNDDGDLVDEEIKNRLEKVHLNAMEQLTEKSDVYGFGVILLELLTGRKPVDHTLPRGEQNLVTWATPRLSEDKVQECVDPKLEGEYPPVAVAKVAAIAALCVQDEADFRPNMSIVVKALQPLLWPPAPEPET*