AlfalfaGEDB | MsaG011346

M. sativa ssp. caerulea / MsaG011346

KEGG: K13436
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0030054 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF03358.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011346	XP_003598674.1	91.400	500	43	0	1	500	1	500	0.0	915

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011346	sp\|B9DFG5\|PTI13_ARATH	71.019	314	71	2	197	491	83	395	3.19e-147	430

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011346	tr\|G7IW36\|G7IW36_MEDTR	91.400	500	43	0	1	500	1	500	0.0	915

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000029	MsaG011346	0.816352	1.003282e-51	2.007142e-49
MsaG000045	MsaG011346	0.897869	2.105479e-76	9.523196e-73
MsaG000062	MsaG011346	0.842826	3.799581e-58	1.622362e-55
MsaG000070	MsaG011346	0.849765	4.983534e-60	2.679497e-57
MsaG000083	MsaG011346	0.885667	1.441066e-71	3.409448e-68
MsaG000110	MsaG011346	0.825534	7.901083e-54	2.017004e-51
MsaG000113	MsaG011346	0.866535	5.335690e-65	5.361342e-62
MsaG000117	MsaG011346	0.800126	2.786969e-48	3.778807e-46
MsaG000127	MsaG011346	0.882482	2.139429e-70	4.338364e-67
MsaG000128	MsaG011346	0.869668	5.291813e-66	6.047521e-63

Showing 1 to 10 of 2,618 entries

Previous1 2 3 4 5…262Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011346	MtrunA17_Chr3g0084191	91.400	500	43	0	1	500	1	500	0.0	915
MsaG011346	MtrunA17_Chr1g0213501	76.292	329	58	2	191	500	76	403	1.41e-168	481
MsaG011346	MtrunA17_Chr1g0194101	64.423	312	88	4	209	500	51	359	1.40e-126	373
MsaG011346	MtrunA17_Chr7g0258951	61.218	312	98	4	209	498	56	366	2.43e-121	360
MsaG011346	MtrunA17_Chr4g0069241	59.105	313	106	3	198	491	39	348	3.06e-116	347
MsaG011346	MtrunA17_Chr1g0175731	57.692	312	110	3	210	500	60	370	1.58e-112	337
MsaG011346	MtrunA17_Chr3g0084161	77.083	192	41	1	1	192	1	189	1.33e-100	300
MsaG011346	MtrunA17_Chr3g0084201	68.229	192	57	1	1	192	1	188	5.03e-89	270
MsaG011346	MtrunA17_Chr3g0084221	64.583	192	65	1	1	192	1	189	3.53e-83	255
MsaG011346	MtrunA17_Chr8g0353131	60.733	191	72	1	2	192	3	190	2.18e-80	248

Showing 1 to 10 of 503 entries

Previous1 2 3 4 5…51Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011346	AT3G59350.2	71.019	314	71	2	197	491	41	353	7.28e-149	430
MsaG011346	AT3G59350.6	71.019	314	71	2	197	491	98	410	2.29e-148	431
MsaG011346	AT3G59350.3	71.019	314	71	2	197	491	83	395	3.24e-148	430
MsaG011346	AT3G59350.1	71.019	314	71	2	197	491	83	395	3.24e-148	430
MsaG011346	AT2G43230.2	71.069	318	66	3	206	498	124	440	3.85e-148	431
MsaG011346	AT2G43230.1	71.069	318	66	3	206	498	90	406	5.69e-148	429
MsaG011346	AT2G30740.5	70.064	314	74	2	197	491	41	353	3.80e-147	426
MsaG011346	AT2G30740.2	70.064	314	74	2	197	491	41	353	3.80e-147	426
MsaG011346	AT2G30740.10	70.064	314	74	2	197	491	41	353	3.80e-147	426
MsaG011346	AT2G30740.11	70.064	314	74	2	197	491	41	353	3.80e-147	426

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 121 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTACGGTTT+TGG	0.213894	3:-1615202	MsaT011346.1:CDS
AAATATCAACGTACACGAAT+TGG	0.307710	3:+1617640	None:intergenic
AAATGACGAGTTTCTAACCC+AGG	0.668078	3:-1616003	MsaT011346.1:intron
AAATTCAGGCTCAAGGTTGC+TGG	0.346426	3:-1616234	MsaT011346.1:intron
AACACTGATCTTGAGGAAGA+AGG	0.510638	3:-1617600	MsaT011346.1:CDS
AACATCATCTCCGCCAAATC+GGG	0.359329	3:-1616499	MsaT011346.1:CDS
AACCACGACCAACTCTTAAC+TGG	0.348873	3:-1615656	MsaT011346.1:CDS
AAGCACTCCAACCACTTCTG+TGG	0.607900	3:-1614732	MsaT011346.1:CDS
AATAATGTTGGAACTTCGAT+AGG	0.540582	3:+1616176	None:intergenic
AATGTTGGAACTTCGATAGG+TGG	0.614174	3:+1616179	None:intergenic

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	1614705	1618013	1614705	ID=MsaG011346
Chr3	mRNA	1614705	1618013	1614705	ID=MsaT011346.1;Parent=MsaG011346
Chr3	exon	1614705	1614824	1614705	ID=MsaT011346.1.exon9;Parent=MsaT011346.1
Chr3	CDS	1614705	1614824	1614705	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1614936	1615022	1614936	ID=MsaT011346.1.exon8;Parent=MsaT011346.1
Chr3	CDS	1614936	1615022	1614936	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1615120	1615249	1615120	ID=MsaT011346.1.exon7;Parent=MsaT011346.1
Chr3	CDS	1615120	1615249	1615120	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1615483	1615702	1615483	ID=MsaT011346.1.exon6;Parent=MsaT011346.1
Chr3	CDS	1615483	1615702	1615483	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1615784	1615910	1615784	ID=MsaT011346.1.exon5;Parent=MsaT011346.1
Chr3	CDS	1615784	1615910	1615784	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1616004	1616248	1616004	ID=MsaT011346.1.exon4;Parent=MsaT011346.1
Chr3	CDS	1616004	1616248	1616004	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1616336	1616629	1616336	ID=MsaT011346.1.exon3;Parent=MsaT011346.1
Chr3	CDS	1616336	1616629	1616336	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1617505	1617705	1617505	ID=MsaT011346.1.exon2;Parent=MsaT011346.1
Chr3	CDS	1617505	1617705	1617505	ID=cds.MsaT011346.1;Parent=MsaT011346.1
Chr3	exon	1617935	1618013	1617935	ID=MsaT011346.1.exon1;Parent=MsaT011346.1
Chr3	CDS	1617935	1618013	1617935	ID=cds.MsaT011346.1;Parent=MsaT011346.1

Gene Sequence

>MsaT011346.1

ATGACAGGGGTGATTAAGATTGCTTGTCTCTCTGGTTCTCTACGAAAAGGCTCTTTTCACACTGGCCTCATTCGTCATGTTATTCACCTGAGCATATTTGGTGATGTTGATGTTGATAATATCCAATTCGTGTACGTTGATATTTCGAATTTGCCATTGTTGAACACTGATCTTGAGGAAGAAGGGACTTTTCCTCTTGAAGTTGAAGATTTTCGTGATTATATTCGTGGAGCTGATAGCTTTCTATTTGCTTCCCCTGAGTATAACTATTCCGTCTCAGCTCCACTAAAGAATGCACTTGATTGGGGATCAAGACCACCAAATGTATGGGCTGGTAAAACTGCTGCCATTGTGAGTGTTGGAGGAGCCTTTGGTGGAGGAAAAGCTCAACATCATCTCCGCCAAATCGGGGTTTTCCTTGATATTCATTTCATCAATAAACCTGAGCTCTACCTGGATGTAATTAAGCATCCAGATATATTTGATGAGGATGGTGACTTGGTTGATGAGGTGATGCAGAATAGATTGAAGGAAGTTCTTGTGTCCTTAAAGGAATTCACCCTTCAGCTTCAAGGCTCAAGGTTGCTGGCTGCCGTCGAACTTGAAACACAAATTGAACCACCACCTATCGAAGTTCCAACATTATTATCGTTAGACGAGTTGAAGGAAAAAACTGACAACTTTGGATCAAACGCGTTGATTGGTGAAGGGTTGTATGGGAGCGTGTATTACGCAACATTAAACGATGGAAAGGCCGTGGCTTTGAAAAAGCTTGAAATTTCTACTGAACCCGAATCAAATGACGAGTTTCTAACCCAGGTTTTCATGGTCTCAAGATTGAAGAATGAAAATTTTGTTGAGTTGTATGGATACTGTGTTGAAGAAAATCTCCATGTACTCGCGTATGAGTATGCTCCTATGGGTTCTCTTCATGACATTTTGCACGGTAGAAACGAAGTTCAAGGGGCACAACCACGACCAACTCTTAACTGGATGCAGCGAGCAAGTATTGCAGTCGATACAGCAAAGGGATTAGAATATTTACATGAGAAAGTTCAACCATCAATCATACACAAGGATATCAGGTCAAGCAATGTGCTTATCTTTGAAGATTACAAAGCTAAGATAGCTGATTTTAACCTCTCTAATACAAAGGGACCCTTTAGAAATGCCATGGAGCAGTTGACTGAAAAAAGTGATGTTTACGGTTTTGGCGTTATTCTTCTCGAGCTCCTTACAGGTAGGAAACCCGTTGATCATACATTGCCTCGAGGAGAACAAAATCTTGTCACATGGGCTACCCCAAGATTAAGTGAAGATAAAGTGCAAGAATGCGTCGACCCAAAACTCGAAGGAGAATATCCCCCGGTAGCAGTTGCTAAGGTTGCAGCTATAGCAGCACTGTGTGTGCAGGATGAAGCTGATTTTAGGCCCAATATGAGCATTGTTGTTAAAGCACTCCAACCACTTCTGTGGCCTCCCGCTCCTGAACCAGAAACTTGA

Protein sequence

>MsaT011346.1

MTGVIKIACLSGSLRKGSFHTGLIRHVIHLSIFGDVDVDNIQFVYVDISNLPLLNTDLEEEGTFPLEVEDFRDYIRGADSFLFASPEYNYSVSAPLKNALDWGSRPPNVWAGKTAAIVSVGGAFGGGKAQHHLRQIGVFLDIHFINKPELYLDVIKHPDIFDEDGDLVDEVMQNRLKEVLVSLKEFTLQLQGSRLLAAVELETQIEPPPIEVPTLLSLDELKEKTDNFGSNALIGEGLYGSVYYATLNDGKAVALKKLEISTEPESNDEFLTQVFMVSRLKNENFVELYGYCVEENLHVLAYEYAPMGSLHDILHGRNEVQGAQPRPTLNWMQRASIAVDTAKGLEYLHEKVQPSIIHKDIRSSNVLIFEDYKAKIADFNLSNTKGPFRNAMEQLTEKSDVYGFGVILLELLTGRKPVDHTLPRGEQNLVTWATPRLSEDKVQECVDPKLEGEYPPVAVAKVAAIAALCVQDEADFRPNMSIVVKALQPLLWPPAPEPET*