AlfalfaGEDB | MsaG011392

M. sativa ssp. caerulea / MsaG011392

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011392	XP_039687783.1	74.619	1639	265	10	7	1509	26	1649	0.0	2472
MsaG011392	XP_039687783.1	77.179	780	124	4	1	738	859	1626	0.0	1231

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011392	sp\|O81832\|Y4729_ARATH	53.206	733	334	6	7	732	22	752	0.0	793
MsaG011392	sp\|O81832\|Y4729_ARATH	50.411	730	353	5	765	1488	30	756	0.0	766

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011392	tr\|A0A2Z6LR55\|A0A2Z6LR55_TRISU	73.415	1625	305	11	1	1509	20	1633	0.0	2417
MsaG011392	tr\|A0A2Z6LR55\|A0A2Z6LR55_TRISU	76.434	802	139	5	739	1501	9	799	0.0	1264

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004687	MsaG011392	0.804073	4.339425e-49	6.439099e-47
MsaG011392	MsaG016659	0.803882	4.751313e-49	7.018843e-47
MsaG011392	MsaG027230	0.827925	2.135403e-54	5.827418e-52
MsaG011392	MsaG028872	0.808092	6.246385e-50	1.018773e-47
MsaG011392	MsaG030805	0.807822	7.124592e-50	1.154476e-47
MsaG011392	MsaG041868	0.805851	1.851040e-49	2.862471e-47
MsaG011392	MsaG043560	0.859521	7.659257e-63	5.847497e-60
MsaG011392	MsaG044082	0.807169	9.786166e-50	1.561201e-47

Showing 1 to 8 of 8 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG011392	MtrunA17_Chr3g0084681	91.475	739	62	1	1	738	20	758	1411
MsaG011392	MtrunA17_Chr3g0084681	83.031	772	127	2	739	1509	9	777	1344
MsaG011392	MtrunA17_Chr3g0084431	77.479	817	123	6	739	1509	9	810	1283
MsaG011392	MtrunA17_Chr3g0084431	77.179	780	124	4	1	738	20	787	1228
MsaG011392	MtrunA17_Chr3g0084411	76.190	819	140	6	739	1509	9	820	1276
MsaG011392	MtrunA17_Chr3g0084411	74.485	776	155	3	1	737	20	791	1201
MsaG011392	MtrunA17_Chr3g0084441	76.654	801	137	5	756	1509	26	823	1266
MsaG011392	MtrunA17_Chr3g0084441	76.129	775	142	3	7	738	26	800	1213
MsaG011392	MtrunA17_Chr3g0084451	75.639	821	144	7	739	1509	9	823	1259
MsaG011392	MtrunA17_Chr3g0084451	74.623	796	153	5	1	750	20	812	1205

Showing 1 to 10 of 1,037 entries

Previous1 2 3 4 5…104Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011392	AT4G27290.1	53.206	733	334	6	7	732	22	752	0.0	793
MsaG011392	AT4G27290.1	50.411	730	353	5	765	1488	30	756	0.0	766
MsaG011392	AT4G27290.2	50.449	779	331	8	7	732	22	798	0.0	773
MsaG011392	AT4G27290.2	48.067	776	348	8	765	1488	30	802	0.0	749
MsaG011392	AT4G27300.1	48.898	771	340	14	10	733	25	788	0.0	706
MsaG011392	AT4G27300.1	47.243	798	363	16	761	1509	27	815	0.0	694
MsaG011392	AT4G21380.1	42.994	835	390	12	749	1509	28	850	0.0	667
MsaG011392	AT4G21380.1	42.191	794	394	13	2	731	23	815	0.0	613
MsaG011392	AT1G65790.1	44.111	832	380	14	749	1509	26	843	0.0	659
MsaG011392	AT1G65790.1	59.197	299	115	3	442	734	515	812	2.56e-105	357

Showing 1 to 10 of 1,039 entries

Previous1 2 3 4 5…104Next

Find 311 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACAGTTGACATGTT+AGG	0.532467	3:-2377395	None:intergenic
AAACCCGGGTTCACTTGGTT+TGG	0.376326	3:-2384053	None:intergenic
AAACCCGGGTTCTATGCAGG+AGG	0.695379	3:+2377455	MsaT011392.1:CDS
AAACGTTGTGAAGTTCCAGA+TGG	0.562662	3:-2374926	None:intergenic
AAACGTTGTGAATTTCCGTA+TGG	0.571423	3:-2381400	None:intergenic
AAAGTAATCCAAGCTTCTGT+TGG	0.474079	3:-2376308	None:intergenic
AAAGTAATCCAAGCTTCTGT+TGG	0.474079	3:-2382772	None:intergenic
AAATCATTGATGGGATTGCT+CGG	0.501659	3:+2376474	MsaT011392.1:CDS
AAATGAAGCTTCAATCACAG+TGG	0.734363	3:+2384120	MsaT011392.1:CDS
AACAGAAACAAGTTAGGAGA+AGG	0.576794	3:+2382464	MsaT011392.1:CDS

Showing 1 to 10 of 311 entries

Previous1 2 3 4 5…32Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	2374188	2384156	2374188	ID=MsaG011392
Chr3	mRNA	2374188	2384156	2374188	ID=MsaT011392.1;Parent=MsaG011392
Chr3	exon	2374188	2375418	2374188	ID=MsaT011392.1.exon1;Parent=MsaT011392.1
Chr3	CDS	2374188	2375418	2374188	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2375889	2376043	2375889	ID=MsaT011392.1.exon2;Parent=MsaT011392.1
Chr3	CDS	2375889	2376043	2375889	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2376127	2376337	2376127	ID=MsaT011392.1.exon3;Parent=MsaT011392.1
Chr3	CDS	2376127	2376337	2376127	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2376432	2376669	2376432	ID=MsaT011392.1.exon4;Parent=MsaT011392.1
Chr3	CDS	2376432	2376669	2376432	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2376854	2377004	2376854	ID=MsaT011392.1.exon5;Parent=MsaT011392.1
Chr3	CDS	2376854	2377004	2376854	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2377260	2377488	2377260	ID=MsaT011392.1.exon6;Parent=MsaT011392.1
Chr3	CDS	2377260	2377488	2377260	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2380621	2381892	2380621	ID=MsaT011392.1.exon7;Parent=MsaT011392.1
Chr3	CDS	2380621	2381892	2380621	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2382354	2382508	2382354	ID=MsaT011392.1.exon8;Parent=MsaT011392.1
Chr3	CDS	2382354	2382508	2382354	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2382591	2382801	2382591	ID=MsaT011392.1.exon9;Parent=MsaT011392.1
Chr3	CDS	2382591	2382801	2382591	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2382896	2383133	2382896	ID=MsaT011392.1.exon10;Parent=MsaT011392.1
Chr3	CDS	2382896	2383133	2382896	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2383459	2383609	2383459	ID=MsaT011392.1.exon11;Parent=MsaT011392.1
Chr3	CDS	2383459	2383609	2383459	ID=cds.MsaT011392.1;Parent=MsaT011392.1
Chr3	exon	2383869	2384156	2383869	ID=MsaT011392.1.exon12;Parent=MsaT011392.1
Chr3	CDS	2383869	2384156	2383869	ID=cds.MsaT011392.1;Parent=MsaT011392.1

Gene Sequence

>MsaT011392.1

ATGCCCACTTTCTCTAAACAGAACACTTTTACTACTATTGCTCCAAATCAGTTTATGCAATTTGGTGATACTCTTGTTTCTGGAACTGGAAGGTTTGAAGCAGGATTTTTCTACTTTGGAGATGCACAACGCCAATACTTCGGTATATGGTATAAGAACATATCACCAAGGACTATTGTGTGGGTTGCCAATAGAAATACTCCTGTACGTAACTCAACAGCAATGCTGAAACTCAACGACCAAGGAAGTCTTGTTATTCTTGATGGCTCCAAAGGTGTCATCTGGAACTCCAATTCATCAAGATTTGCGGCGGTGAAATCAGTTGTTGTGCAGTTGTTGGATTCAGGGAACCTTGTTGTGAAAGATGCAATCAGCTCTCTGAACTTTTTGTGGGAAAGTTTCGATTATCCTGGTAACACTTTCCTTGCTGGAATGAAGCTGCAAAGTAACTTAGTTAATGGTCCATATAGATATCTCACTTCTTGGAGATCCTCTGAAGATCCTGCTGACAGCGAGTTTTCGTATAGGATAGATACTCATGGTTTTCCTCAACACCTAATTGCAAAGGGAACGACAACTATGTTTAGAGGAGGGTCGTGGAACGGATATCATTTCACTGGAGCTATTTGGCAAAGAATTCATAGTATATTGAATTACTCATTTGTGTTAACTGACAAAGAAGTCAGTTATCAATATGAAACTTTGAACAGTTTAATTATTACTATAGTTGTGCTAAATCCATCTGGAACTTCACAACGTTTTCAATGGTCGGATCAAAAACAAAATTGGGAGACTATATCTAATGGTCCTGCAGACCAGTGTGATGATTATGCCTTGTGCGGTATCAACGCTAACTGCAATATTAATAACTTTCCAATATGTGAATGCTTGGAAGGTTTCATGCCAAAATTTCAATTAAAATGGAAGTCGTCGGATTGGTCTGATGGGTGCCTGAGGAGAACAAAATTGAATTGTCACACTGGAGATGGCTTTCTGAAGTACACAAGCATGAAGTTGCCAGACACGTCAACATCTTGGTATGACAAGAGCTTGAGCCTTGAGGAATGTAAGACAGTGTGTTTGAAAAACTGTACTTGCACTGCATATGCAAATTCTGATATCAGAGGTGGTGGGAGTGGCTGCTTACTTTGGTTTAACAACATTGTGGATATAAGAAAACATCCTGAAGTAGGACAAGATATTTACATACGACTTGCATCTTCAGAACTCGGGTATATAAAAAAGTTAATTCATCGGAAGCACAAGAAAGAGAAGGAAGATGGTGACTTGGCAACAATATTTGATTTTTCGACCATCACTAATGCAACAAATCACTTCTCTGATACAAATAAGTTAGGAGAAGGTGGTTTTGGACCAGTTTACAAGGGCTTAATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTTTGCAATACATCGGGACAAGGAGTTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACAAGATGAAAAGTTGTTGATCTATGAATTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACAACACGAAGTAAATTACTAGATTGGATAAAGCGCTTGGAAATCATTGATGGGATTGCTCGGGGGCTTCTGTATCTGCATCAGGATTCTACACTAAGAATCATACATAGAGATCTCAAAACAAGCAATATTCTTCTTGACATTGATATGATCCCAAAGATAGCAGATTTTGGCTTAGCCAGATCATTTATGGGAGACCAAGCTGAGGCTAAAACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCAGTGCATGGATCTTTCTCTATAAAATCTGATGTTTTTAGCTTTGGAGTCGTTGTACTTGAGATAATTAGTGGTAGAAAGAATCGCGGATTTTGTGACCCTCTACATCACCTAAACCTTCTTGGTCATGCATGGAGACTATGGACTGAAGAAAAGCCAAAGGAGTTAATATCTGACATATTATATGATGATGACATATCTGCAAAAATTATAAGATTTATTCATGTCGGTCTATTGTGTGTTCAACAGAAACCAGAAAATAGGCCTAACATGTCAACTGTGGTTTTTATGTTGAAGGGTGAAAATTTACTCCCCAAACCAAGTAAACCCGGGTTCTATGCAGGAGGAGATGATACAATGCTAATTGTGTGTGCTTTCTTATTTTGCTCCATGCAAACTTTATCTAAACAGAACACTCTTACTACTATTTCTCCAAATCAGTTTATGCAATTCGGTGATACGCTTGTTTCTAGAGCTGGAAGGTTTGAAGCAGGATTTTTCAACTTTGGAGATTCACAGCCCCAATACTTCGGTATATGGTACAAGAACATATCACCAAGGACTATTGTGTGGGTTGCCAATAGAAATACTCCGGTACATAACTCAACAGCATTGCTGAAACTCACTGATCAAGGAAGTCTTGTTATTCTTGATGGCTCCAAAGGTGTCATCTGGAACTCCAATTCATCAAGAATTGCGACGGTGAAATCAGTTGTTGTGCAGTTGTTGGATTCAGGGAACCTTGTTGTGAAAGATGCAGACAACACTCAGAACTTTATGTGGGAAAGTTTTGACTATCCCGGTAACACTTTCCTTCCTGGAATCAAGCTGAAAAGTAATTTAGTGAGTGGTCCATATAGATATCTCACATCTTGGAGAAGCCCTCAAGATCCTGCTGAAGGTGACTGTTCATATAGGATAGACATACACGGTTTTCCTCAACTGGTTACTGTAAAGGGAGCAAGAATTCTGTATAGAGGAGGGTCGTGGAATGGATTTCTTTTCGCTGGTGTTTCTTGGCACTGGTATATAACTAATTATAAAGTCTTGAATTTCACAGTAGAGTTCAATGACAAAGAATTCTCTTATCAATACCGAATCTTGAACGCTTCAATTATTATTAGAATGATACTAGATCCATACGGAAATTCACAACGTTTTCTATGGTCAGATAGCACACAAATTTGGGAGGCTCTATCTTCTAGTCCTGCCGACCAGTGTGATGATTATGCCTTGTGTGGTATCAACTCTAACTGCGATCTTAATAAATTTCCAGTATGTGAATGCTTGGAAGGTTTCATGCCAAAATTTCAACTAAAGTGGGAGTCATCAGATTGGTCTGGTGGGTGTGTAAGGAAAACACATTTAAATTGTCTCCATGGAGATGGGTTTTTGAAGTACACAAATATGAAGTTGCCAGATACGTCATCATCATGGTTTAACAAAAGCTTGAACCTTGAGGAATGTAAGACAATGTGTTTGAAAAACTGTTCTTGCACTGCATATGCAAATTCAGATATCAGAAATGGTGGGAGTGGTTGCTTACTTTGGTTTGACAACATTGTCGACATGAGAAAACATCCTGACCTAGGCCAAGATATTTACATACGACTCGCTTCTTCAGAACTTGGGTATATAAAAAAGTTATTTCGGTGGAAGGACAGGAAGGAGAAGGAAGATGGTGACTTAGCAACAATATTTGATTTTTCGATCATCACTAATGCAACAAATCACTTCTCTAACAGAAACAAGTTAGGAGAAGGTGGTTTTGGACCAGTATACAAGGGCTTAATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTTTGTAATACATCCGGACAAGGAGTTGAGGAGTTCAAAAATGAAGTAAAGTTGATGGCAACACTTCAACACCGTAATCTAGTAAAACTTCTTGGTTGTTCTATTCACCAAGATGAAAAGTTGTTGATCTACGAATTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACTGCACGAAGTAAATTACTAGATTGGACAAAGCGCTTGGAAATTATTGATGGGATTGCTCGAGGCCTGCTGTATCTCCATCAGGATTCTACATTAAGAATCATACATAGAGATCTCAAGACCAGCAATATACTTCTTGATATTGATATGATCCCAAAGATATCCGATTTTGGATTAGCCAGATCATTTATGGGAGACCAAGCTGAGGCTAAAACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCCTTGCATGGATCTTTCTCAATAAAATCTGATGTTTTTAGTTTTGGAGTCGTCGTACTTGAGATAATTAGCGGTAGGAAGAATCGCGGATTTTGTGACCCTCTGCATCATCTAAACCTTCTTAGTCATGCATGGAGACTATGGATTGAAGAAAGGCCATTGGAGTTCATAGCTGACATATTATACGATGATGCCATATCTTCAAAAATAATAAGATTTCTTCACGTTGGTCTATTGTGTGTACAACGGAAACCAGAAAATAGGCCTAACATGTCATCTGCGGTTATTATGTTAAAGGGTGAAAATTTACTCCCCAAACCAAGTGAACCCGGGTTTTACGCAGGAAGAGATAATACAAATAGCATAGGATCTTCGTCTATAAATGAAGCTTCAATCACAGTGGTAGAGGCGCGTTAG

Protein sequence

>MsaT011392.1

MPTFSKQNTFTTIAPNQFMQFGDTLVSGTGRFEAGFFYFGDAQRQYFGIWYKNISPRTIVWVANRNTPVRNSTAMLKLNDQGSLVILDGSKGVIWNSNSSRFAAVKSVVVQLLDSGNLVVKDAISSLNFLWESFDYPGNTFLAGMKLQSNLVNGPYRYLTSWRSSEDPADSEFSYRIDTHGFPQHLIAKGTTTMFRGGSWNGYHFTGAIWQRIHSILNYSFVLTDKEVSYQYETLNSLIITIVVLNPSGTSQRFQWSDQKQNWETISNGPADQCDDYALCGINANCNINNFPICECLEGFMPKFQLKWKSSDWSDGCLRRTKLNCHTGDGFLKYTSMKLPDTSTSWYDKSLSLEECKTVCLKNCTCTAYANSDIRGGGSGCLLWFNNIVDIRKHPEVGQDIYIRLASSELGYIKKLIHRKHKKEKEDGDLATIFDFSTITNATNHFSDTNKLGEGGFGPVYKGLMVDGQEIAVKRLCNTSGQGVEEFKNEVKLMATLQHRNLVKLLGCSIQQDEKLLIYEFMPNRSLDYFIFDTTRSKLLDWIKRLEIIDGIARGLLYLHQDSTLRIIHRDLKTSNILLDIDMIPKIADFGLARSFMGDQAEAKTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGRKNRGFCDPLHHLNLLGHAWRLWTEEKPKELISDILYDDDISAKIIRFIHVGLLCVQQKPENRPNMSTVVFMLKGENLLPKPSKPGFYAGGDDTMLIVCAFLFCSMQTLSKQNTLTTISPNQFMQFGDTLVSRAGRFEAGFFNFGDSQPQYFGIWYKNISPRTIVWVANRNTPVHNSTALLKLTDQGSLVILDGSKGVIWNSNSSRIATVKSVVVQLLDSGNLVVKDADNTQNFMWESFDYPGNTFLPGIKLKSNLVSGPYRYLTSWRSPQDPAEGDCSYRIDIHGFPQLVTVKGARILYRGGSWNGFLFAGVSWHWYITNYKVLNFTVEFNDKEFSYQYRILNASIIIRMILDPYGNSQRFLWSDSTQIWEALSSSPADQCDDYALCGINSNCDLNKFPVCECLEGFMPKFQLKWESSDWSGGCVRKTHLNCLHGDGFLKYTNMKLPDTSSSWFNKSLNLEECKTMCLKNCSCTAYANSDIRNGGSGCLLWFDNIVDMRKHPDLGQDIYIRLASSELGYIKKLFRWKDRKEKEDGDLATIFDFSIITNATNHFSNRNKLGEGGFGPVYKGLMVDGQEIAVKRLCNTSGQGVEEFKNEVKLMATLQHRNLVKLLGCSIHQDEKLLIYEFMPNRSLDYFIFDTARSKLLDWTKRLEIIDGIARGLLYLHQDSTLRIIHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEAKTNRVMGTYGYMPPEYALHGSFSIKSDVFSFGVVVLEIISGRKNRGFCDPLHHLNLLSHAWRLWIEERPLEFIADILYDDAISSKIIRFLHVGLLCVQRKPENRPNMSSAVIMLKGENLLPKPSEPGFYAGRDNTNSIGSSSINEASITVVEAR*