AlfalfaGEDB | MsaG011595

M. sativa ssp. caerulea / MsaG011595

KEGG: K14328
GO: GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011595	XP_003598025.2	52.158	278	107	4	239	514	11	264	1.38e-77	264
MsaG011595	XP_003598025.2	80.762	525	97	3	1	523	20	542	0.0	843

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011595	sp\|Q8L3W1\|VRN1_ARATH	44.444	99	55	0	270	368	6	104	7.84e-21	97.1
MsaG011595	sp\|Q8L3W1\|VRN1_ARATH	40.404	99	59	0	23	121	6	104	1.28e-19	93.6
MsaG011595	sp\|Q8L3W1\|VRN1_ARATH	34.266	143	82	5	386	522	205	341	6.15e-12	70.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011595	tr\|G7IYE4\|G7IYE4_MEDTR	52.158	278	107	4	239	514	11	264	6.60e-78	264
MsaG011595	tr\|G7IYE4\|G7IYE4_MEDTR	80.762	525	97	3	1	523	20	542	0.0	843

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TFs/TRs:

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Gene ID	Type	Classification
MsaG011595	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011595	MtrunA17_Chr3g0077361	74.857	525	93	4	1	523	20	507	0.0	763
MsaG011595	MtrunA17_Chr3g0077361	52.158	278	107	4	239	514	11	264	3.77e-82	264
MsaG011595	MtrunA17_Chr3g0077411	70.919	533	135	4	1	523	1	523	0.0	740
MsaG011595	MtrunA17_Chr3g0077461	66.042	480	127	7	38	515	22	467	0.0	608
MsaG011595	MtrunA17_Chr3g0077461	47.500	240	107	6	18	244	232	465	1.07e-58	201
MsaG011595	MtrunA17_Chr4g0009491	66.129	434	126	2	37	469	11	424	0.0	557
MsaG011595	MtrunA17_Chr4g0009491	54.930	213	74	2	284	496	11	201	4.70e-67	223
MsaG011595	MtrunA17_Chr4g0009491	49.524	210	83	2	18	204	220	429	2.80e-56	194
MsaG011595	MtrunA17_Chr3g0077381	65.463	443	122	4	37	477	34	447	0.0	550
MsaG011595	MtrunA17_Chr3g0077381	50.644	233	69	4	284	514	34	222	1.64e-60	206

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011595	AT3G18990.1	44.444	99	55	0	270	368	6	104	7.97e-22	97.1
MsaG011595	AT3G18990.1	40.404	99	59	0	23	121	6	104	1.30e-20	93.6
MsaG011595	AT3G18990.1	34.266	143	82	5	386	522	205	341	6.25e-13	70.5
MsaG011595	AT3G18990.2	44.444	99	55	0	270	368	6	104	1.40e-21	97.1
MsaG011595	AT3G18990.2	40.404	99	59	0	23	121	6	104	2.05e-20	93.6
MsaG011595	AT3G18990.2	34.722	144	82	5	386	523	205	342	2.82e-13	72.0
MsaG011595	AT4G01580.1	37.121	132	80	1	239	370	2	130	8.20e-20	87.8
MsaG011595	AT4G01580.1	34.545	110	72	0	16	125	23	132	1.36e-17	81.6
MsaG011595	AT3G18960.2	37.121	132	80	1	239	370	2	130	5.16e-19	85.5
MsaG011595	AT3G18960.2	35.185	108	70	0	16	123	23	130	4.07e-17	80.1

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Find 100 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGATTGAAGAAACG+CGG	0.691481	3:-7638413	MsaT011595.1:CDS
AAAATTATCAAGGAAAGCAG+TGG	0.569536	3:-7639334	MsaT011595.1:CDS
AAAATTCTGATGGAAAACAG+TGG	0.620787	3:-7637890	MsaT011595.1:CDS
AAATACTATTCGTTAGGATA+TGG	0.294914	3:-7638350	MsaT011595.1:CDS
AAATGTTTGGAGTCTTTCTC+CGG	0.467870	3:+7640264	None:intergenic
AAATTATCAAGGAAAGCAGT+GGG	0.608378	3:-7639333	MsaT011595.1:CDS
AAATTCTGATGGAAAACAGT+GGG	0.613196	3:-7637889	MsaT011595.1:CDS
AAGGGAAAACAATCTATCAA+AGG	0.593937	3:-7639240	MsaT011595.1:CDS
AAGTGAGTGTCATGGGAAAA+AGG	0.323227	3:-7638168	MsaT011595.1:CDS
AATCGCCAAGACGAAATATG+CGG	0.738605	3:-7638060	MsaT011595.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	7637710	7640331	7637710	ID=MsaG011595
Chr3	mRNA	7637710	7640331	7637710	ID=MsaT011595.1;Parent=MsaG011595
Chr3	exon	7637710	7637970	7637710	ID=MsaT011595.1.exon6;Parent=MsaT011595.1
Chr3	CDS	7637710	7637970	7637710	ID=cds.MsaT011595.1;Parent=MsaT011595.1
Chr3	exon	7638061	7638519	7638061	ID=MsaT011595.1.exon5;Parent=MsaT011595.1
Chr3	CDS	7638061	7638519	7638061	ID=cds.MsaT011595.1;Parent=MsaT011595.1
Chr3	exon	7638940	7639044	7638940	ID=MsaT011595.1.exon4;Parent=MsaT011595.1
Chr3	CDS	7638940	7639044	7638940	ID=cds.MsaT011595.1;Parent=MsaT011595.1
Chr3	exon	7639169	7639414	7639169	ID=MsaT011595.1.exon3;Parent=MsaT011595.1
Chr3	CDS	7639169	7639414	7639169	ID=cds.MsaT011595.1;Parent=MsaT011595.1
Chr3	exon	7639510	7639899	7639510	ID=MsaT011595.1.exon2;Parent=MsaT011595.1
Chr3	CDS	7639510	7639899	7639510	ID=cds.MsaT011595.1;Parent=MsaT011595.1
Chr3	exon	7640221	7640331	7640221	ID=MsaT011595.1.exon1;Parent=MsaT011595.1
Chr3	CDS	7640221	7640331	7640221	ID=cds.MsaT011595.1;Parent=MsaT011595.1

Gene Sequence

>MsaT011595.1

ATGAAGACTCGCCGGAGAAGATGTGTTCCGACACCGTCACCGGTACCGGAGAAAGACTCCAAACATTTTATGAAAGCCATTCTTCCCCCTCCAGATCACACAAAAGAAATACAAATTCCAAATGAGTTTATAAAAAGATTTGGAAACGAACTCAAGAATGTTGCTAAGATTACTGTTCCCGATGGTCATGAATGGGAAATGGGACTGAAGAAATGTGGCGAACATGTTTTCCTTAGCAACAATTGGCAACAGTTTGTAGAATACTATTCTATTTATTATGGTTGTTATTTAGATTTCAAGTACGAAGGAAATTCAAAGTTTAATGTTGTTATATACGATACAACTTCTGTTGAGATTTCTTATCCATTCCAAACTCGGAGGACTAATGGAGAACCAAACATAAACTGTCTGAGCTCTGCTTCCGAAAGATCAAAGGATGCTGCCAATGGAATCAACCCAAAAAACACTTCTTTTCGTTCCAAAGCCTTTGGCTGCTATGCATATGTTCCTGGTGAATTTGCTAAGGAGCATCTGAAGCCATATGTTCCGTTCATGCTCCAAAATTATCAAGGAAAGCAGTGGGAAGTTTCTGGTGTATTGGATAGACCAAGAAAATCAGCAATGCGAATTACGAGTGGATTCTATAGATTTGGAAGGGAAAACAATCTATCAAAGGAAGTTTTTTACAACTTTGAGCTGATCAAGAGGAAGCCTGTTGTGGTGTTACAAGTTACTGCTTCTTGCACGCCTCCACAGGGAAGGTGTGCCCAGTCAATGACAGAAAAGGAAGTTAAGGAATCCAAACATTTCAAGAAGGCCATACTTCCCTCGCCCATTCATGACAAAGAGATAAGAATTCCAGATGAGCTTATAACAAGATTTGGGAACGAACTCAAGAATGTTGCTACAGTTACAGTTCCTGATGGTCGTGATTGGAAAATGAGATTGAAGAAACGCGGCAATGACATTTTCTTTTGCAACGAATGGCAAGAGTTTGCAAAATACTATTCGTTAGGATATGGTTGCTACCTATCTTTCAAATACAAAGGGAATTCAAAGTTTAGTGTTATTATATTTGACGTGACTTCTGTTGAGATTTGTTATCCATTCAAAACTTCAAGTGTTACTGGAGAACCAAACACAAAGTGTGCTAGTCCTAGGAAAAGGTCCAAGGTTGAAACAAGTGAGTGTCATGGGAAAAAGGCCAAAAGCGTGTCTAAACATGCTTCTACAAGAGCAGAGGTTGCTGCCAATGAATTCAACCCAAAAAACCCTTATTTTTGTTCAAAAATCGCCAAGACGAAATATGCGTATGTTCCTTGTGATTTTGCTGTGAAGTATCTGAAACCAAATGTTCCTACAAAGCTCCAAAATTCTGATGGAAAACAGTGGGAAGTGTTTTGCATGCGGAATACCGTCAGATCATCGTCTATGCGAATAGTGAAGGGATTTCCTAATTTTATAACGGACAACAATCTGTCACATGGAGATTATTGTGTGTATGAGCTCATCAAGAAGAAGCCGGTTGTGCTAGAAGTCACAATGTTTCGTGCAGTTGACTATCTTGACTAA

Protein sequence

>MsaT011595.1

MKTRRRRCVPTPSPVPEKDSKHFMKAILPPPDHTKEIQIPNEFIKRFGNELKNVAKITVPDGHEWEMGLKKCGEHVFLSNNWQQFVEYYSIYYGCYLDFKYEGNSKFNVVIYDTTSVEISYPFQTRRTNGEPNINCLSSASERSKDAANGINPKNTSFRSKAFGCYAYVPGEFAKEHLKPYVPFMLQNYQGKQWEVSGVLDRPRKSAMRITSGFYRFGRENNLSKEVFYNFELIKRKPVVVLQVTASCTPPQGRCAQSMTEKEVKESKHFKKAILPSPIHDKEIRIPDELITRFGNELKNVATVTVPDGRDWKMRLKKRGNDIFFCNEWQEFAKYYSLGYGCYLSFKYKGNSKFSVIIFDVTSVEICYPFKTSSVTGEPNTKCASPRKRSKVETSECHGKKAKSVSKHASTRAEVAANEFNPKNPYFCSKIAKTKYAYVPCDFAVKYLKPNVPTKLQNSDGKQWEVFCMRNTVRSSSMRIVKGFPNFITDNNLSHGDYCVYELIKKKPVVLEVTMFRAVDYLD*