AlfalfaGEDB | MsaG011596

M. sativa ssp. caerulea / MsaG011596

KEGG: K14328
GO: GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701
PFAM: PF02362.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	XP_003598025.2	74.187	523	107	4	1	497	20	540	0.0	769

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	sp\|Q8L3W1\|VRN1_ARATH	26.488	336	164	6	246	498	6	341	8.64e-28	117
MsaG011596	sp\|Q8L3W1\|VRN1_ARATH	39.394	99	60	0	23	121	6	104	5.14e-18	88.6

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	tr\|G7IYE4\|G7IYE4_MEDTR	74.187	523	107	4	1	497	20	540	0.0	769

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG011596	TF	B3

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000578	MsaG011596	0.824729	1.221546e-53	3.050118e-51
MsaG000687	MsaG011596	0.847249	2.459429e-59	1.214480e-56
MsaG001237	MsaG011596	0.809735	2.790973e-50	4.735749e-48
MsaG001946	MsaG011596	0.827885	2.183982e-54	5.953200e-52
MsaG002273	MsaG011596	0.885200	2.150846e-71	4.975823e-68
MsaG002866	MsaG011596	0.810678	1.751490e-50	3.040807e-48
MsaG003394	MsaG011596	0.839856	2.277880e-57	8.852579e-55
MsaG003648	MsaG011596	0.820585	1.113327e-52	2.486733e-50
MsaG004108	MsaG011596	0.877924	8.902422e-69	1.459937e-65
MsaG005202	MsaG011596	0.828645	1.435061e-54	3.996031e-52

Showing 1 to 10 of 106 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	MtrunA17_Chr3g0077361	68.260	523	103	5	1	497	20	505	0.0	689
MsaG011596	MtrunA17_Chr3g0077381	77.435	421	84	3	37	453	34	447	0.0	651
MsaG011596	MtrunA17_Chr3g0077381	50.215	233	70	3	260	490	34	222	1.16e-58	200
MsaG011596	MtrunA17_Chr3g0077381	50.971	206	72	2	18	201	242	440	1.69e-57	197
MsaG011596	MtrunA17_Chr3g0077411	63.277	531	151	6	1	497	1	521	0.0	634
MsaG011596	MtrunA17_Chr4g0009491	74.528	424	99	3	37	453	11	432	0.0	627
MsaG011596	MtrunA17_Chr4g0009491	52.427	206	76	1	18	201	220	425	1.05e-62	210
MsaG011596	MtrunA17_Chr4g0009491	52.113	213	80	1	260	472	11	201	1.71e-60	204
MsaG011596	MtrunA17_Chr3g0077461	56.458	480	149	10	38	491	22	467	6.94e-169	484
MsaG011596	MtrunA17_Chr3g0077461	45.798	238	96	6	18	223	232	468	2.92e-51	181

Showing 1 to 10 of 73 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	AT3G18990.1	26.488	336	164	6	246	498	6	341	8.79e-29	117
MsaG011596	AT3G18990.1	39.394	99	60	0	23	121	6	104	5.22e-19	88.6
MsaG011596	AT3G18990.2	26.647	334	162	6	246	496	6	339	3.12e-28	115
MsaG011596	AT3G18990.2	39.394	99	60	0	23	121	6	104	8.45e-19	88.6
MsaG011596	AT3G18960.2	38.462	130	78	1	219	346	1	130	6.72e-20	88.2
MsaG011596	AT3G18960.2	34.259	108	71	0	16	123	23	130	2.49e-16	77.8
MsaG011596	AT3G18960.1	38.462	130	78	1	219	346	1	130	1.36e-19	87.8
MsaG011596	AT3G18960.1	34.259	108	71	0	16	123	23	130	6.17e-16	77.0
MsaG011596	AT4G01580.1	41.748	103	60	0	244	346	28	130	2.78e-19	86.3
MsaG011596	AT4G01580.1	35.185	108	70	0	16	123	23	130	8.25e-17	79.0

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Find 84 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCACAATGTTTCGTG+CGG	0.653466	3:-7664041	MsaT011596.1:CDS
AAAATTCACAAGGAAAGCAG+TGG	0.601932	3:-7665726	MsaT011596.1:CDS
AAAATTCTCAAGGAAAGCTG+TGG	0.573034	3:-7664204	MsaT011596.1:CDS
AAATGTTTGGAGTCTTTCTC+CGG	0.467870	3:+7667062	None:intergenic
AAATTCACAAGGAAAGCAGT+GGG	0.637805	3:-7665725	MsaT011596.1:CDS
AAGGAAAACAATCTATTAAA+GGG	0.431604	3:-7665633	MsaT011596.1:CDS
AAGGACAACCATCTGACACA+TGG	0.646280	3:-7664109	MsaT011596.1:CDS
AATAATCTCCATGTGTCAGA+TGG	0.608955	3:+7664101	None:intergenic
AATCTTGTTATGAACTCATC+CGG	0.487752	3:+7664804	None:intergenic
AATGACAGAAAAGGAAGTAA+GGG	0.571733	3:-7665389	MsaT011596.1:CDS

Showing 1 to 10 of 84 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	7664024	7667129	7664024	ID=MsaG011596
Chr3	mRNA	7664024	7667129	7664024	ID=MsaT011596.1;Parent=MsaG011596
Chr3	exon	7664024	7664284	7664024	ID=MsaT011596.1.exon7;Parent=MsaT011596.1
Chr3	CDS	7664024	7664284	7664024	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7664374	7664832	7664374	ID=MsaT011596.1.exon6;Parent=MsaT011596.1
Chr3	CDS	7664374	7664832	7664374	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665333	7665437	7665333	ID=MsaT011596.1.exon5;Parent=MsaT011596.1
Chr3	CDS	7665333	7665437	7665333	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665566	7665652	7665566	ID=MsaT011596.1.exon4;Parent=MsaT011596.1
Chr3	CDS	7665566	7665652	7665566	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665723	7665806	7665723	ID=MsaT011596.1.exon3;Parent=MsaT011596.1
Chr3	CDS	7665723	7665806	7665723	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665894	7666286	7665894	ID=MsaT011596.1.exon2;Parent=MsaT011596.1
Chr3	CDS	7665894	7666286	7665894	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7667019	7667129	7667019	ID=MsaT011596.1.exon1;Parent=MsaT011596.1
Chr3	CDS	7667019	7667129	7667019	ID=cds.MsaT011596.1;Parent=MsaT011596.1

Gene Sequence

>MsaT011596.1

ATGAAGACTCGCCGGAGAAGATGTGTTCCGACACCGTCACCGGTACCGGAGAAAGACTCCAAACATTTTATGAAAGCCATTCTTCCCCCTCCAGATCACACAAAAGAAATACGAATTCCAGACGAGTTTATAAAAAGATATGGGAACGAACTCAAGAATGTTGCTAAGATTACTGTTCCCGATGGTCGTGAATGGGAAATGGGACTGAAGAAATGTGGCGAACATGTTTTCCTTAGCAACAATTGGCAACAGTTTGTAGAATACTATTCTATTTATTATGGTTGTTATTTAGATTTCAAGTATGAAGGGTATTCAAAGTTTAATGTTGTTATATATGATACAACTTCTGTTGAGATTTCTTATCCATTCAAAACTTCATGTACTAATGGTGAGAAAAACATAAAGGGTCCTAACTCTGCTTCCAGAAGAGCAAAATGTGCTGCCAGTGAATTCAACCCAAAAAACCCTTATTTTCGATCAAAATCCGTCAGGGGCTTTTATGCATATGTTCCTTCTAGTTTTGCTGAAAAGTATCTGACCCTAAAGGTTCCGTTCAAGCTCCAAAATTCACAAGGAAAGCAGTGGGAAGAAAACAATCTATTAAAGGGAGTTACATATGTGTTTGAGCTGATCAAGAGGAAGCCTGTTGTACTACTTGTTACAGCGATTTGCACGCCTCCACGGGGAATGTCTGCCCAGTCAATGACAGAAAAGGAAGTAAGGGAATCGAAACATTTTAAGAAGGCCATACTTCCCTCGCCCATTCATGACAAAGAGATAAGAATTCCGGATGAGTTCATAACAAGATTTGGGAACGAACTCAAGAATGTTGCTACAATTACAGTTCCCGATGGTCGTGATTGGAAAATGAGATTGAAGAAACGCGACAATGACATTTTCTTTTACAACGAATGGCAGGAGTTTGCAAATTACTATTCGTTAGGATATGGTTGCTTTCTGTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGTAACTTCGGTTGAGATTTGCTATCCACTCAAAAATCTAAGTACTAATGGAGAAACAAACACACAGTGTCCTACTTCTATGAAAAGTTCCAGGGTTGAAACAAGTGGCAGTCAAGGGAAAAAGCTCAAAATCATGTTTGAACATGCCTTTAAAAGTGCAGAGGATGCTGCCAATGAATTCAATCCAAAAAACCCTTACTTTTCTTCAAAAATTTCTAAGCGAAATCTTGTGAATGTTACTTCTAAATTTGCTAAAAAGTATCTAATGCCAAATGTTCCAATCGCACTCCAAAATTCTCAAGGAAAGCTGTGGAAAGTTCGTTGTAAATTCTATAATCCCAATTCATTCTCAATGCAAATAACAAGGGGATTTTCGAAATTTCTAAAGGACAACCATCTGACACATGGAGATTATTGTGTATTTGAGTTGATCAAGGAGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGTGCGGTTGACTACACCAAATAA

Protein sequence

>MsaT011596.1

MKTRRRRCVPTPSPVPEKDSKHFMKAILPPPDHTKEIRIPDEFIKRYGNELKNVAKITVPDGREWEMGLKKCGEHVFLSNNWQQFVEYYSIYYGCYLDFKYEGYSKFNVVIYDTTSVEISYPFKTSCTNGEKNIKGPNSASRRAKCAASEFNPKNPYFRSKSVRGFYAYVPSSFAEKYLTLKVPFKLQNSQGKQWEENNLLKGVTYVFELIKRKPVVLLVTAICTPPRGMSAQSMTEKEVRESKHFKKAILPSPIHDKEIRIPDEFITRFGNELKNVATITVPDGRDWKMRLKKRDNDIFFYNEWQEFANYYSLGYGCFLSFKYEGNSKFSVIIFDVTSVEICYPLKNLSTNGETNTQCPTSMKSSRVETSGSQGKKLKIMFEHAFKSAEDAANEFNPKNPYFSSKISKRNLVNVTSKFAKKYLMPNVPIALQNSQGKLWKVRCKFYNPNSFSMQITRGFSKFLKDNHLTHGDYCVFELIKEKPVVLKVTMFRAVDYTK*