AlfalfaGEDB | MsaG011596

M. sativa ssp. caerulea / MsaG011596

KEGG: K14328
GO: GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	XP_003598025.2	74.187	523	107	4	1	497	20	540	0.0	769

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	sp\|Q8L3W1\|VRN1_ARATH	26.488	336	164	6	246	498	6	341	8.64e-28	117
MsaG011596	sp\|Q8L3W1\|VRN1_ARATH	39.394	99	60	0	23	121	6	104	5.14e-18	88.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	tr\|G7IYE4\|G7IYE4_MEDTR	74.187	523	107	4	1	497	20	540	0.0	769

TFs/TRs:

Gene ID	Type	Classification
MsaG011596	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000578	MsaG011596	0.824729	1.221546e-53	3.050118e-51
MsaG000687	MsaG011596	0.847249	2.459429e-59	1.214480e-56
MsaG001237	MsaG011596	0.809735	2.790973e-50	4.735749e-48
MsaG001946	MsaG011596	0.827885	2.183982e-54	5.953200e-52
MsaG002273	MsaG011596	0.885200	2.150846e-71	4.975823e-68
MsaG002866	MsaG011596	0.810678	1.751490e-50	3.040807e-48
MsaG003394	MsaG011596	0.839856	2.277880e-57	8.852579e-55
MsaG003648	MsaG011596	0.820585	1.113327e-52	2.486733e-50
MsaG004108	MsaG011596	0.877924	8.902422e-69	1.459937e-65
MsaG005202	MsaG011596	0.828645	1.435061e-54	3.996031e-52
MsaG005274	MsaG011596	0.802164	1.072178e-48	1.522445e-46
MsaG005277	MsaG011596	0.823743	2.077325e-53	5.049848e-51
MsaG005435	MsaG011596	0.823321	2.605591e-53	6.261802e-51
MsaG005438	MsaG011596	0.830678	4.619409e-55	1.362980e-52
MsaG005969	MsaG011596	0.822783	3.472734e-53	8.225304e-51
MsaG006639	MsaG011596	0.827199	3.183878e-54	8.513196e-52
MsaG007168	MsaG011596	0.815839	1.304538e-51	2.575933e-49
MsaG007215	MsaG011596	0.827407	2.840845e-54	7.640434e-52
MsaG008356	MsaG011596	0.800012	2.939781e-48	3.975975e-46
MsaG008525	MsaG011596	0.805417	2.281022e-49	3.491715e-47
MsaG010066	MsaG011596	0.811040	1.463461e-50	2.563437e-48
MsaG010508	MsaG011596	0.811475	1.178926e-50	2.087157e-48
MsaG011275	MsaG011596	0.811493	1.168251e-50	2.069184e-48
MsaG011596	MsaG012190	0.808143	6.091152e-50	9.946738e-48
MsaG011596	MsaG012312	0.800998	1.854812e-48	2.564918e-46
MsaG011596	MsaG013993	0.812087	8.687019e-51	1.561152e-48
MsaG011596	MsaG014439	0.808068	6.319583e-50	1.030108e-47
MsaG011596	MsaG015176	0.837654	8.399088e-57	3.047859e-54
MsaG011596	MsaG015269	0.810125	2.302170e-50	3.943374e-48
MsaG011596	MsaG015705	0.817348	6.009802e-52	1.233511e-49
MsaG011596	MsaG016006	0.854258	2.674924e-61	1.683169e-58
MsaG011596	MsaG016115	0.802565	8.874343e-49	1.271773e-46
MsaG011596	MsaG016674	0.812471	7.170320e-51	1.300986e-48
MsaG011596	MsaG016708	0.809313	3.434260e-50	5.767967e-48
MsaG011596	MsaG018065	0.837578	8.782917e-57	3.179720e-54
MsaG011596	MsaG018336	0.834187	6.298845e-56	2.059098e-53
MsaG011596	MsaG018712	0.832007	2.183746e-55	6.697315e-53
MsaG011596	MsaG018813	0.804627	3.330703e-49	5.005875e-47
MsaG011596	MsaG018791	0.802006	1.155284e-48	1.634516e-46
MsaG011596	MsaG019138	0.849806	4.854718e-60	2.613717e-57
MsaG011596	MsaG019137	0.826743	4.087821e-54	1.079229e-51
MsaG011596	MsaG019564	0.813431	4.427089e-51	8.227328e-49
MsaG011596	MsaG019628	0.826168	5.595637e-54	1.453879e-51
MsaG011596	MsaG019929	0.801612	1.390670e-48	1.950029e-46
MsaG011596	MsaG020874	0.827002	3.547564e-54	9.433391e-52
MsaG011596	MsaG020875	0.816953	7.366214e-52	1.496621e-49
MsaG011596	MsaG022243	0.802489	9.199171e-49	1.316010e-46
MsaG011596	MsaG022628	0.815673	1.419660e-51	2.791555e-49
MsaG011596	MsaG023578	0.800708	2.124047e-48	2.918248e-46
MsaG011596	MsaG023762	0.803136	6.772908e-49	9.834176e-47
MsaG011596	MsaG024010	0.826829	3.899374e-54	1.031912e-51
MsaG011596	MsaG028163	0.829280	1.008761e-54	2.859673e-52
MsaG011596	MsaG028196	0.802375	9.709792e-49	1.385443e-46
MsaG011596	MsaG029319	0.805535	2.155093e-49	3.308020e-47
MsaG011596	MsaG029340	0.814909	2.095942e-51	4.042317e-49
MsaG011596	MsaG029461	0.830558	4.938763e-55	1.452260e-52
MsaG011596	MsaG029483	0.810802	1.647278e-50	2.868629e-48
MsaG011596	MsaG029745	0.830493	5.122882e-55	1.503549e-52
MsaG011596	MsaG029863	0.819101	2.422035e-52	5.202368e-50
MsaG011596	MsaG032221	0.818543	3.237973e-52	6.853837e-50
MsaG011596	MsaG035529	0.826700	4.186124e-54	1.103852e-51
MsaG011596	MsaG035860	0.837953	7.041733e-57	2.578957e-54
MsaG011596	MsaG036973	0.840046	2.033859e-57	7.951259e-55
MsaG011596	MsaG040669	0.812451	7.240939e-51	1.313144e-48
MsaG011596	MsaG041112	0.811124	1.403571e-50	2.463542e-48
MsaG011596	MsaG041285	0.831333	3.195569e-55	9.608779e-53
MsaG011596	MsaG042968	0.803206	6.551830e-49	9.528689e-47
MsaG011596	MsaG043808	0.863598	4.415150e-64	3.945415e-61
MsaG011596	MsaG045109	0.812535	6.942302e-51	1.261633e-48
MsaG011596	MsaG045339	0.829633	8.287282e-55	2.373386e-52
MsaG011596	MsaG045362	0.821220	7.963458e-53	1.808946e-50
MsaG011596	MsaG045372	0.806921	1.103848e-49	1.750652e-47
MsaG011596	MsaG045380	0.813744	3.781173e-51	7.082195e-49
MsaG011596	MsaG045375	0.801041	1.817498e-48	2.515789e-46
MsaG011596	MsaG045376	0.848382	1.202650e-59	6.168282e-57
MsaG011596	MsaG045522	0.817254	6.310033e-52	1.292025e-49
MsaG011596	MsaG046126	0.833098	1.174766e-55	3.719274e-53
MsaG011596	MsaG046226	0.804991	2.798259e-49	4.241425e-47
MsaG011596	MsaG046488	0.802973	7.316413e-49	1.058344e-46
MsaG011596	MsaG046802	0.833982	7.082439e-56	2.301228e-53
MsaG011596	MsaG046816	0.816672	8.513201e-52	1.717081e-49
MsaG011596	MsaG046912	0.833662	8.508019e-56	2.738712e-53
MsaG011596	MsaG047128	0.837698	8.181102e-57	2.972774e-54
MsaG011596	MsaG047194	0.801793	1.276978e-48	1.798006e-46
MsaG011596	MsaG003009	0.812620	6.652938e-51	1.211567e-48
MsaG011596	MsaG001106	0.812275	7.907284e-51	1.427691e-48
MsaG011596	MsaG007590	0.811740	1.033200e-50	1.841063e-48
MsaG011596	MsaG015244	0.836557	1.596298e-56	5.602764e-54
MsaG011596	MsaG013406	0.823467	2.409776e-53	5.813847e-51
MsaG011596	MsaG017319	0.822000	5.267227e-53	1.221510e-50
MsaG011596	MsaG011742	0.850646	2.828990e-60	1.567827e-57
MsaG011596	MsaG014180	0.812402	7.422330e-51	1.344408e-48
MsaG011596	MsaG015534	0.814894	2.111494e-51	4.070802e-49
MsaG011596	MsaG013014	0.840180	1.877321e-57	7.369930e-55
MsaG011596	MsaG031314	0.800974	1.875699e-48	2.592389e-46
MsaG011596	MsaG030439	0.824465	1.409123e-53	3.493233e-51
MsaG011596	MsaG032261	0.827771	2.325060e-54	6.317520e-52
MsaG011596	MsaG033467	0.810008	2.438881e-50	4.165791e-48
MsaG011596	MsaG029957	0.838335	5.622631e-57	2.083555e-54
MsaG011596	MsaG033345	0.805819	1.879458e-49	2.904288e-47
MsaG011596	MsaG031025	0.831108	3.626928e-55	1.083518e-52
MsaG011596	MsaG030458	0.812444	7.264979e-51	1.317295e-48
MsaG011596	MsaG040848	0.801024	1.832199e-48	2.535141e-46
MsaG011596	MsaG037271	0.800016	2.933894e-48	3.968367e-46
MsaG011596	MsaG036984	0.828781	1.330888e-54	3.719900e-52
MsaG011596	MsaG042290	0.800252	2.628294e-48	3.573857e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	MtrunA17_Chr3g0077361	68.260	523	103	5	1	497	20	505	0.0	689
MsaG011596	MtrunA17_Chr3g0077381	77.435	421	84	3	37	453	34	447	0.0	651
MsaG011596	MtrunA17_Chr3g0077381	50.215	233	70	3	260	490	34	222	1.16e-58	200
MsaG011596	MtrunA17_Chr3g0077381	50.971	206	72	2	18	201	242	440	1.69e-57	197
MsaG011596	MtrunA17_Chr3g0077411	63.277	531	151	6	1	497	1	521	0.0	634
MsaG011596	MtrunA17_Chr4g0009491	74.528	424	99	3	37	453	11	432	0.0	627
MsaG011596	MtrunA17_Chr4g0009491	52.427	206	76	1	18	201	220	425	1.05e-62	210
MsaG011596	MtrunA17_Chr4g0009491	52.113	213	80	1	260	472	11	201	1.71e-60	204
MsaG011596	MtrunA17_Chr3g0077461	56.458	480	149	10	38	491	22	467	6.94e-169	484
MsaG011596	MtrunA17_Chr3g0077461	45.798	238	96	6	18	223	232	468	2.92e-51	181
MsaG011596	MtrunA17_Chr5g0429931	67.089	237	78	0	261	497	10	246	2.12e-106	317
MsaG011596	MtrunA17_Chr5g0429931	53.913	230	60	2	38	221	10	239	3.39e-69	221
MsaG011596	MtrunA17_Chr3g0077451	65.272	239	72	2	260	497	10	238	1.31e-103	310
MsaG011596	MtrunA17_Chr3g0077451	54.955	222	63	2	37	221	10	231	4.17e-69	221
MsaG011596	MtrunA17_Chr3g0077431	62.201	209	68	2	290	497	1	199	2.52e-83	256
MsaG011596	MtrunA17_Chr3g0077431	50.521	192	58	2	67	221	1	192	1.83e-49	168
MsaG011596	MtrunA17_Chr3g0077421	60.476	210	71	2	290	497	1	200	6.09e-80	248
MsaG011596	MtrunA17_Chr3g0077421	50.259	193	58	2	67	221	1	193	8.55e-49	166
MsaG011596	MtrunA17_Chr3g0077441	60.476	210	71	2	290	497	1	200	6.09e-80	248
MsaG011596	MtrunA17_Chr3g0077441	50.259	193	58	2	67	221	1	193	8.55e-49	166
MsaG011596	MtrunA17_Chr3g0131891	29.553	291	164	6	245	496	18	306	1.74e-30	121
MsaG011596	MtrunA17_Chr3g0131891	31.250	144	98	1	15	158	11	153	3.74e-17	82.8
MsaG011596	MtrunA17_Chr7g0233561	28.710	310	172	9	239	499	9	318	1.14e-29	119
MsaG011596	MtrunA17_Chr7g0233561	31.481	162	101	3	12	164	7	167	1.96e-17	83.6
MsaG011596	MtrunA17_Chr1g0162441	48.485	99	51	0	246	344	7	105	8.05e-27	112
MsaG011596	MtrunA17_Chr1g0162441	43.434	99	56	0	23	121	7	105	6.98e-23	100
MsaG011596	MtrunA17_Chr8g0390841	23.136	523	313	17	23	496	39	521	5.13e-25	108
MsaG011596	MtrunA17_Chr1g0208771	25.413	484	298	16	38	494	12	459	2.34e-24	105
MsaG011596	MtrunA17_Chr7g0233521	28.413	271	152	5	262	496	2	266	2.45e-24	102
MsaG011596	MtrunA17_Chr7g0233521	32.653	98	62	1	39	132	2	99	4.57e-14	72.8
MsaG011596	MtrunA17_Chr3g0103181	28.214	280	158	6	245	492	11	279	3.19e-24	102
MsaG011596	MtrunA17_Chr3g0103181	33.813	139	88	2	22	160	11	145	2.34e-16	79.3
MsaG011596	MtrunA17_Chr3g0103171	27.715	267	152	6	261	492	5	265	2.33e-23	99.4
MsaG011596	MtrunA17_Chr3g0103171	39.583	96	56	1	38	133	5	98	5.27e-17	80.9
MsaG011596	MtrunA17_Chr7g0233531	28.947	266	157	7	262	496	2	266	5.17e-23	99.0
MsaG011596	MtrunA17_Chr7g0233531	30.000	120	77	2	39	151	2	121	4.53e-13	69.7
MsaG011596	MtrunA17_Chr4g0033961	43.137	102	58	0	243	344	3	104	1.29e-22	100
MsaG011596	MtrunA17_Chr4g0033961	39.216	102	62	0	20	121	3	104	1.66e-18	87.8
MsaG011596	MtrunA17_Chr1g0163071	28.136	295	140	8	262	493	2	287	2.57e-22	97.4
MsaG011596	MtrunA17_Chr1g0163071	34.118	85	56	0	39	123	2	86	7.69e-12	66.2
MsaG011596	MtrunA17_Chr7g0233541	27.586	290	147	7	262	496	2	283	2.42e-21	94.4
MsaG011596	MtrunA17_Chr7g0233541	33.036	112	68	2	39	144	2	112	1.30e-14	74.7
MsaG011596	MtrunA17_Chr1g0162411	46.667	90	48	0	246	335	7	96	3.70e-21	95.9
MsaG011596	MtrunA17_Chr1g0162411	38.835	103	63	0	23	125	7	109	2.60e-18	87.4
MsaG011596	MtrunA17_Chr5g0419201	36.792	106	67	0	239	344	9	114	3.11e-20	88.6
MsaG011596	MtrunA17_Chr5g0419201	34.211	114	74	1	9	121	1	114	2.58e-16	77.4
MsaG011596	MtrunA17_Chr5g0421921	40.541	111	65	1	387	497	3	112	6.24e-20	85.1
MsaG011596	MtrunA17_Chr5g0421731	40.541	111	65	1	387	497	3	112	6.24e-20	85.1
MsaG011596	MtrunA17_Chr5g0421851	40.541	111	65	1	387	497	78	187	1.64e-19	86.7
MsaG011596	MtrunA17_Chr7g0233571	37.500	112	70	0	245	356	9	120	4.10e-19	86.3
MsaG011596	MtrunA17_Chr7g0233571	35.644	101	65	0	22	122	9	109	1.05e-16	79.3
MsaG011596	MtrunA17_Chr4g0067431	28.197	305	165	9	234	486	2	304	1.64e-18	86.7
MsaG011596	MtrunA17_Chr1g0154161	26.502	283	168	9	245	492	29	306	3.60e-18	85.5
MsaG011596	MtrunA17_Chr3g0103151	36.154	130	70	2	245	374	11	127	1.42e-17	80.1
MsaG011596	MtrunA17_Chr3g0103151	33.766	154	90	3	22	167	11	160	2.91e-17	79.3
MsaG011596	MtrunA17_Chr1g0163221	27.018	285	167	8	245	492	10	290	6.60e-17	82.4
MsaG011596	MtrunA17_Chr1g0162421	50.000	58	29	0	260	317	7	64	1.30e-16	74.3
MsaG011596	MtrunA17_Chr1g0162421	43.103	58	33	0	37	94	7	64	3.61e-13	64.3
MsaG011596	MtrunA17_Chr1g0163131	23.975	317	176	9	228	495	9	309	3.67e-16	79.3
MsaG011596	MtrunA17_Chr3g0103191	42.424	99	55	1	246	344	12	108	9.26e-16	77.0
MsaG011596	MtrunA17_Chr3g0103191	36.937	111	65	2	23	133	12	117	7.23e-15	74.3
MsaG011596	MtrunA17_Chr1g0171611	25.362	276	175	8	244	498	7	272	2.04e-15	77.0
MsaG011596	MtrunA17_Chr6g0467351	33.094	139	90	2	230	367	1	137	8.08e-15	73.9
MsaG011596	MtrunA17_Chr6g0467351	26.667	120	87	1	22	140	14	133	2.26e-11	63.9
MsaG011596	MtrunA17_Chr1g0163251	25.000	272	170	9	255	495	14	282	6.56e-14	73.6
MsaG011596	MtrunA17_Chr1g0163101	29.197	137	94	2	230	366	1	134	2.66e-13	68.6
MsaG011596	MtrunA17_Chr1g0154041	32.990	97	64	1	245	341	15	110	2.70e-13	72.4
MsaG011596	MtrunA17_Chr1g0154041	26.733	101	74	0	27	127	19	119	4.12e-11	65.5
MsaG011596	MtrunA17_Chr1g0163231	23.759	282	180	9	246	498	9	284	3.87e-12	67.0
MsaG011596	MtrunA17_Chr1g0154101	33.858	127	76	3	220	339	150	275	4.04e-12	68.9
MsaG011596	MtrunA17_Chr1g0163061	30.147	136	92	2	230	364	1	134	6.83e-12	65.9
MsaG011596	MtrunA17_Chr1g0163261	24.911	281	178	9	244	494	7	284	1.52e-11	65.5
MsaG011596	MtrunA17_Chr6g0476181	37.113	97	58	2	262	358	2	95	4.91e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011596	AT3G18990.1	26.488	336	164	6	246	498	6	341	8.79e-29	117
MsaG011596	AT3G18990.1	39.394	99	60	0	23	121	6	104	5.22e-19	88.6
MsaG011596	AT3G18990.2	26.647	334	162	6	246	496	6	339	3.12e-28	115
MsaG011596	AT3G18990.2	39.394	99	60	0	23	121	6	104	8.45e-19	88.6
MsaG011596	AT3G18960.2	38.462	130	78	1	219	346	1	130	6.72e-20	88.2
MsaG011596	AT3G18960.2	34.259	108	71	0	16	123	23	130	2.49e-16	77.8
MsaG011596	AT3G18960.1	38.462	130	78	1	219	346	1	130	1.36e-19	87.8
MsaG011596	AT3G18960.1	34.259	108	71	0	16	123	23	130	6.17e-16	77.0
MsaG011596	AT4G01580.1	41.748	103	60	0	244	346	28	130	2.78e-19	86.3
MsaG011596	AT4G01580.1	35.185	108	70	0	16	123	23	130	8.25e-17	79.0
MsaG011596	AT1G49475.1	42.342	111	63	1	244	354	32	141	4.21e-19	85.9
MsaG011596	AT1G49475.1	33.571	140	84	2	1	132	4	142	5.48e-16	76.6
MsaG011596	AT3G18960.3	40.909	88	52	0	259	346	6	93	1.05e-14	72.4
MsaG011596	AT3G18960.3	34.091	88	58	0	36	123	6	93	2.84e-12	65.5
MsaG011596	AT4G31640.1	25.600	250	149	10	243	481	11	234	4.37e-12	67.8
MsaG011596	AT2G24645.1	21.346	520	316	23	20	488	3	480	1.30e-11	67.0
MsaG011596	AT1G26680.5	22.486	547	319	22	22	491	14	532	2.36e-11	67.0
MsaG011596	AT1G26680.6	22.486	547	319	22	22	491	14	532	2.69e-11	66.6
MsaG011596	AT2G24645.2	23.529	391	227	19	21	367	4	366	7.74e-11	64.3
MsaG011596	AT1G49480.3	35.345	116	65	4	389	498	115	226	8.71e-11	62.4
MsaG011596	AT1G49480.1	35.345	116	65	4	389	498	115	226	8.71e-11	62.4
MsaG011596	AT1G49480.2	35.345	116	65	4	389	498	115	226	8.71e-11	62.4

Find 84 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACTGCTTTCCTTGTGAATTT+TGG	0.083618	3:+7665728	None:intergenic
ACAGCTTTCCTTGAGAATTT+TGG	0.151929	3:+7664206	None:intergenic
GAATACTATTCTATTTATTA+TGG	0.217855	3:-7666117	MsaT011596.1:CDS
CAAGGAAAACAATCTATTAA+AGG	0.231374	3:-7665634	MsaT011596.1:intron
AATTACTATTCGTTAGGATA+TGG	0.265897	3:-7664663	MsaT011596.1:CDS
GATGAGTTCATAACAAGATT+TGG	0.268341	3:-7664801	MsaT011596.1:CDS
AGAATACATAAGCTGTTATT+TGG	0.268783	3:+7664009	None:intergenic
GAGCTTGAACGGAACCTTTA+GGG	0.299957	3:+7665750	None:intergenic
AATGGCTTTCATAAAATGTT+TGG	0.312275	3:+7667049	None:intergenic
TACTATCTCTTTGTCATGAA+TGG	0.314672	3:+7665330	None:intergenic
GGAGCTTGAACGGAACCTTT+AGG	0.336035	3:+7665749	None:intergenic
GCTCTTCTGGAAGCAGAGTT+AGG	0.343489	3:+7665967	None:intergenic
CTACTTCTATGAAAAGTTCC+AGG	0.344709	3:-7664512	MsaT011596.1:CDS
TGGAGTGCGATTGGAACATT+TGG	0.367737	3:+7664226	None:intergenic
CGATGGTCGTGAATGGGAAA+TGG	0.374916	3:-7666196	MsaT011596.1:CDS
ATGAATGGGCGAGGGAAGTA+TGG	0.376143	3:+7665345	None:intergenic
ATGAGTTCATAACAAGATTT+GGG	0.379410	3:-7664800	MsaT011596.1:CDS
GTTATCACTGCAGAGAATTC+CGG	0.381761	3:-7664823	MsaT011596.1:intron
TTCAAAACTTCATGTACTAA+TGG	0.390004	3:-7666009	MsaT011596.1:CDS
ATTTGCATTGAGAATGAATT+GGG	0.414962	3:+7664157	None:intergenic
TTTCTGTCTTTCAAATATGA+AGG	0.422326	3:-7664636	MsaT011596.1:CDS
TTTGCAAATTACTATTCGTT+AGG	0.423437	3:-7664669	MsaT011596.1:CDS
AAGGAAAACAATCTATTAAA+GGG	0.431604	3:-7665633	MsaT011596.1:CDS
CAGTTCCCGATGGTCGTGAT+TGG	0.434376	3:-7664749	MsaT011596.1:CDS
TATTTAGATTTCAAGTATGA+AGG	0.439885	3:-7666090	MsaT011596.1:CDS
CAATGACAGAAAAGGAAGTA+AGG	0.446214	3:-7665390	MsaT011596.1:CDS
TATTGCAATGCAGCCTCCAC+GGG	0.446625	3:-7665428	MsaT011596.1:intron
ACTATCTCTTTGTCATGAAT+GGG	0.448674	3:+7665331	None:intergenic
TATTTGCATTGAGAATGAAT+TGG	0.458395	3:+7664156	None:intergenic
CTGTTCCCGATGGTCGTGAA+TGG	0.460301	3:-7666203	MsaT011596.1:CDS
AAATGTTTGGAGTCTTTCTC+CGG	0.467870	3:+7667062	None:intergenic
TTGGAGTCTTTCTCCGGTAC+CGG	0.468616	3:+7667068	None:intergenic
TTGTGTATTTGAGTTGATCA+AGG	0.476643	3:-7664080	MsaT011596.1:CDS
AATCTTGTTATGAACTCATC+CGG	0.487752	3:+7664804	None:intergenic
TTCTGTCTTTCAAATATGAA+GGG	0.490414	3:-7664635	MsaT011596.1:CDS
CTCTTTGTCATGAATGGGCG+AGG	0.492559	3:+7665336	None:intergenic
TCCGACACCGTCACCGGTAC+CGG	0.493461	3:-7667081	MsaT011596.1:CDS
CATTTCCCATTCACGACCAT+CGG	0.495250	3:+7666197	None:intergenic
CATTCTCAATGCAAATAACA+AGG	0.496017	3:-7664150	MsaT011596.1:CDS
GATGGTCGTGAATGGGAAAT+GGG	0.497506	3:-7666195	MsaT011596.1:CDS
ATTTCCCATTCACGACCATC+GGG	0.501758	3:+7666198	None:intergenic
GCTGTAACAAGTAGTACAAC+AGG	0.510742	3:+7665576	None:intergenic
TGTTCCCGATGGTCGTGAAT+GGG	0.514313	3:-7666202	MsaT011596.1:CDS
ACTGTTGCCAATTGTTGCTA+AGG	0.515477	3:+7666145	None:intergenic
TCTTTCTCCGGTACCGGTGA+CGG	0.524117	3:+7667074	None:intergenic
TGCCCAGTCAATGACAGAAA+AGG	0.524540	3:-7665398	MsaT011596.1:CDS
ACTGCCACTTGTTTCAACCC+TGG	0.525622	3:+7664494	None:intergenic
ATGTGTTCCGACACCGTCAC+CGG	0.529883	3:-7667087	MsaT011596.1:CDS
TGAGTTGATCAAGGAGAAGC+CGG	0.530941	3:-7664071	MsaT011596.1:CDS
GTGTCGGAACACATCTTCTC+CGG	0.535373	3:+7667096	None:intergenic
ATTTAGATTTCAAGTATGAA+GGG	0.536271	3:-7666089	MsaT011596.1:CDS
GTTGAAACAAGTGGCAGTCA+AGG	0.541942	3:-7664489	MsaT011596.1:CDS
TATTATATTTGATGTAACTT+CGG	0.545296	3:-7664595	MsaT011596.1:CDS
TTATTGCAATGCAGCCTCCA+CGG	0.552353	3:-7665429	MsaT011596.1:intron
TGAAAAGTATCTGACCCTAA+AGG	0.565833	3:-7665764	MsaT011596.1:CDS
TCCGGTACCGGTGACGGTGT+CGG	0.565849	3:+7667080	None:intergenic
AATTTCTAAGCGAAATCTTG+TGG	0.569288	3:-7664373	MsaT011596.1:intron
AATGACAGAAAAGGAAGTAA+GGG	0.571733	3:-7665389	MsaT011596.1:CDS
AAAATTCTCAAGGAAAGCTG+TGG	0.573034	3:-7664204	MsaT011596.1:CDS
ATTCTCAATGCAAATAACAA+GGG	0.579626	3:-7664149	MsaT011596.1:CDS
TTCTCAATGCAAATAACAAG+GGG	0.581315	3:-7664148	MsaT011596.1:CDS
TACTTCTATGAAAAGTTCCA+GGG	0.583386	3:-7664511	MsaT011596.1:CDS
ATGTGTTTGAGCTGATCAAG+AGG	0.597303	3:-7665602	MsaT011596.1:CDS
ATCGCACTCCAAAATTCTCA+AGG	0.598710	3:-7664214	MsaT011596.1:CDS
AAAATTCACAAGGAAAGCAG+TGG	0.601932	3:-7665726	MsaT011596.1:CDS
GCTAAGATTACTGTTCCCGA+TGG	0.603036	3:-7666213	MsaT011596.1:CDS
AATAATCTCCATGTGTCAGA+TGG	0.608955	3:+7664101	None:intergenic
TTGAAACAAGTGGCAGTCAA+GGG	0.614317	3:-7664488	MsaT011596.1:CDS
TACTGCATAAAAGCCCCTGA+CGG	0.614950	3:+7665891	None:intergenic
ACTTGTTACAGCGATTTGCA+CGG	0.615517	3:-7665565	MsaT011596.1:intron
TAGAAACAATGAAGACTCGC+CGG	0.625107	3:-7667115	None:intergenic
AGTTCCAGGGTTGAAACAAG+TGG	0.632824	3:-7664498	MsaT011596.1:CDS
TGGGCAGACATTCCCCGTGG+AGG	0.633574	3:+7665415	None:intergenic
AAATTCACAAGGAAAGCAGT+GGG	0.637805	3:-7665725	MsaT011596.1:CDS
ACATGCCTTTAAAAGTGCAG+AGG	0.638536	3:-7664442	MsaT011596.1:CDS
TTTCGATCAAAATCCGTCAG+GGG	0.644334	3:-7665904	MsaT011596.1:CDS
AAGGACAACCATCTGACACA+TGG	0.646280	3:-7664109	MsaT011596.1:CDS
TCTTTGTCATGAATGGGCGA+GGG	0.647829	3:+7665337	None:intergenic
AAAAGTCACAATGTTTCGTG+CGG	0.653466	3:-7664041	MsaT011596.1:CDS
GCTACAATTACAGTTCCCGA+TGG	0.653468	3:-7664759	MsaT011596.1:CDS
TTCAAGCTCCAAAATTCACA+AGG	0.659089	3:-7665736	MsaT011596.1:CDS
GAAATGGGACTGAAGAAATG+TGG	0.715375	3:-7666180	MsaT011596.1:CDS
GACTGGGCAGACATTCCCCG+TGG	0.720587	3:+7665412	None:intergenic
ATTGCAATGCAGCCTCCACG+GGG	0.736037	3:-7665427	MsaT011596.1:intron

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	7664024	7667129	7664024	ID=MsaG011596
Chr3	mRNA	7664024	7667129	7664024	ID=MsaT011596.1;Parent=MsaG011596
Chr3	exon	7664024	7664284	7664024	ID=MsaT011596.1.exon7;Parent=MsaT011596.1
Chr3	CDS	7664024	7664284	7664024	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7664374	7664832	7664374	ID=MsaT011596.1.exon6;Parent=MsaT011596.1
Chr3	CDS	7664374	7664832	7664374	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665333	7665437	7665333	ID=MsaT011596.1.exon5;Parent=MsaT011596.1
Chr3	CDS	7665333	7665437	7665333	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665566	7665652	7665566	ID=MsaT011596.1.exon4;Parent=MsaT011596.1
Chr3	CDS	7665566	7665652	7665566	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665723	7665806	7665723	ID=MsaT011596.1.exon3;Parent=MsaT011596.1
Chr3	CDS	7665723	7665806	7665723	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7665894	7666286	7665894	ID=MsaT011596.1.exon2;Parent=MsaT011596.1
Chr3	CDS	7665894	7666286	7665894	ID=cds.MsaT011596.1;Parent=MsaT011596.1
Chr3	exon	7667019	7667129	7667019	ID=MsaT011596.1.exon1;Parent=MsaT011596.1
Chr3	CDS	7667019	7667129	7667019	ID=cds.MsaT011596.1;Parent=MsaT011596.1

Gene Sequence

>MsaT011596.1

ATGAAGACTCGCCGGAGAAGATGTGTTCCGACACCGTCACCGGTACCGGAGAAAGACTCCAAACATTTTATGAAAGCCATTCTTCCCCCTCCAGATCACACAAAAGAAATACGAATTCCAGACGAGTTTATAAAAAGATATGGGAACGAACTCAAGAATGTTGCTAAGATTACTGTTCCCGATGGTCGTGAATGGGAAATGGGACTGAAGAAATGTGGCGAACATGTTTTCCTTAGCAACAATTGGCAACAGTTTGTAGAATACTATTCTATTTATTATGGTTGTTATTTAGATTTCAAGTATGAAGGGTATTCAAAGTTTAATGTTGTTATATATGATACAACTTCTGTTGAGATTTCTTATCCATTCAAAACTTCATGTACTAATGGTGAGAAAAACATAAAGGGTCCTAACTCTGCTTCCAGAAGAGCAAAATGTGCTGCCAGTGAATTCAACCCAAAAAACCCTTATTTTCGATCAAAATCCGTCAGGGGCTTTTATGCATATGTTCCTTCTAGTTTTGCTGAAAAGTATCTGACCCTAAAGGTTCCGTTCAAGCTCCAAAATTCACAAGGAAAGCAGTGGGAAGAAAACAATCTATTAAAGGGAGTTACATATGTGTTTGAGCTGATCAAGAGGAAGCCTGTTGTACTACTTGTTACAGCGATTTGCACGCCTCCACGGGGAATGTCTGCCCAGTCAATGACAGAAAAGGAAGTAAGGGAATCGAAACATTTTAAGAAGGCCATACTTCCCTCGCCCATTCATGACAAAGAGATAAGAATTCCGGATGAGTTCATAACAAGATTTGGGAACGAACTCAAGAATGTTGCTACAATTACAGTTCCCGATGGTCGTGATTGGAAAATGAGATTGAAGAAACGCGACAATGACATTTTCTTTTACAACGAATGGCAGGAGTTTGCAAATTACTATTCGTTAGGATATGGTTGCTTTCTGTCTTTCAAATATGAAGGGAATTCAAAGTTTAGTGTTATTATATTTGATGTAACTTCGGTTGAGATTTGCTATCCACTCAAAAATCTAAGTACTAATGGAGAAACAAACACACAGTGTCCTACTTCTATGAAAAGTTCCAGGGTTGAAACAAGTGGCAGTCAAGGGAAAAAGCTCAAAATCATGTTTGAACATGCCTTTAAAAGTGCAGAGGATGCTGCCAATGAATTCAATCCAAAAAACCCTTACTTTTCTTCAAAAATTTCTAAGCGAAATCTTGTGAATGTTACTTCTAAATTTGCTAAAAAGTATCTAATGCCAAATGTTCCAATCGCACTCCAAAATTCTCAAGGAAAGCTGTGGAAAGTTCGTTGTAAATTCTATAATCCCAATTCATTCTCAATGCAAATAACAAGGGGATTTTCGAAATTTCTAAAGGACAACCATCTGACACATGGAGATTATTGTGTATTTGAGTTGATCAAGGAGAAGCCGGTTGTGCTAAAAGTCACAATGTTTCGTGCGGTTGACTACACCAAATAA

Protein sequence

>MsaT011596.1

MKTRRRRCVPTPSPVPEKDSKHFMKAILPPPDHTKEIRIPDEFIKRYGNELKNVAKITVPDGREWEMGLKKCGEHVFLSNNWQQFVEYYSIYYGCYLDFKYEGYSKFNVVIYDTTSVEISYPFKTSCTNGEKNIKGPNSASRRAKCAASEFNPKNPYFRSKSVRGFYAYVPSSFAEKYLTLKVPFKLQNSQGKQWEENNLLKGVTYVFELIKRKPVVLLVTAICTPPRGMSAQSMTEKEVRESKHFKKAILPSPIHDKEIRIPDEFITRFGNELKNVATITVPDGRDWKMRLKKRDNDIFFYNEWQEFANYYSLGYGCFLSFKYEGNSKFSVIIFDVTSVEICYPLKNLSTNGETNTQCPTSMKSSRVETSGSQGKKLKIMFEHAFKSAEDAANEFNPKNPYFSSKISKRNLVNVTSKFAKKYLMPNVPIALQNSQGKLWKVRCKFYNPNSFSMQITRGFSKFLKDNHLTHGDYCVFELIKEKPVVLKVTMFRAVDYTK*