AlfalfaGEDB | MsaG011598

M. sativa ssp. caerulea / MsaG011598

KEGG: K14328
GO: GO:0000184 GO:0000956 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010605 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0023052 GO:0031974 GO:0031981 GO:0032870 GO:0034641 GO:0034655 GO:0035690 GO:0042221 GO:0042493 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046677 GO:0046700 GO:0048519 GO:0048571 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901700 GO:1901701
PFAM: PF02362.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011598	XP_003598029.2	77.099	524	100	5	1	505	1	523	0.0	805

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011598	sp\|Q8L3W1\|VRN1_ARATH	43.564	101	57	0	257	357	6	106	8.04e-21	97.1
MsaG011598	sp\|Q8L3W1\|VRN1_ARATH	38.384	99	61	0	21	119	6	104	1.79e-17	87.0
MsaG011598	sp\|Q8L3W1\|VRN1_ARATH	35.000	140	75	3	370	504	213	341	2.87e-12	71.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011598	tr\|G7IYE8\|G7IYE8_MEDTR	77.099	524	100	5	1	505	1	523	0.0	805

TFs/TRs:

Gene ID	Type	Classification
MsaG011598	TF	B3

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000034	MsaG011598	0.828578	1.488761e-54	4.137969e-52
MsaG000551	MsaG011598	0.824116	1.700088e-53	4.174729e-51
MsaG001156	MsaG011598	0.829818	7.472759e-55	2.151420e-52
MsaG001179	MsaG011598	0.826095	5.821937e-54	1.509639e-51
MsaG002016	MsaG011598	0.833475	9.471116e-56	3.031894e-53
MsaG002177	MsaG011598	0.806132	1.616408e-49	2.516327e-47
MsaG003083	MsaG011598	0.820150	1.398806e-52	3.088858e-50
MsaG003276	MsaG011598	0.861704	1.680494e-63	1.394248e-60
MsaG003287	MsaG011598	0.825321	8.867815e-54	2.250541e-51
MsaG003288	MsaG011598	0.850992	2.263804e-60	1.269624e-57
MsaG003867	MsaG011598	0.806984	1.070689e-49	1.700620e-47
MsaG004282	MsaG011598	0.832097	2.075389e-55	6.381729e-53
MsaG004434	MsaG011598	0.804295	3.903131e-49	5.821566e-47
MsaG004464	MsaG011598	0.805103	2.650846e-49	4.028476e-47
MsaG004576	MsaG011598	0.807418	8.672253e-50	1.391719e-47
MsaG004726	MsaG011598	0.823810	2.003919e-53	4.880253e-51
MsaG004892	MsaG011598	0.803598	5.438890e-49	7.981886e-47
MsaG004946	MsaG011598	0.807319	9.098114e-50	1.456602e-47
MsaG005001	MsaG011598	0.804365	3.773991e-49	5.638100e-47
MsaG005148	MsaG011598	0.819639	1.828738e-52	3.983583e-50
MsaG005149	MsaG011598	0.826332	5.117045e-54	1.335551e-51
MsaG005150	MsaG011598	0.824278	1.557999e-53	3.842707e-51
MsaG006592	MsaG011598	0.800681	2.151024e-48	2.953524e-46
MsaG007429	MsaG011598	0.802810	7.904864e-49	1.139164e-46
MsaG007868	MsaG011598	0.800827	2.009619e-48	2.768310e-46
MsaG008101	MsaG011598	0.819788	1.691360e-52	3.698910e-50
MsaG008538	MsaG011598	0.833697	8.340438e-56	2.687535e-53
MsaG010095	MsaG011598	0.811510	1.158326e-50	2.052448e-48
MsaG010107	MsaG011598	0.817837	4.668454e-52	9.703451e-50
MsaG011505	MsaG011598	0.835451	3.037505e-56	1.031296e-53
MsaG011598	MsaG012326	0.803529	5.620156e-49	8.234919e-47
MsaG011598	MsaG012941	0.807603	7.924618e-50	1.277356e-47
MsaG011598	MsaG012942	0.805687	2.002477e-49	3.084855e-47
MsaG011598	MsaG014920	0.800577	2.258915e-48	3.094301e-46
MsaG011598	MsaG015173	0.816378	9.901694e-52	1.982202e-49
MsaG011598	MsaG016920	0.815353	1.671831e-51	3.260833e-49
MsaG011598	MsaG017329	0.808267	5.733465e-50	9.390723e-48
MsaG011598	MsaG018170	0.805477	2.215675e-49	3.396496e-47
MsaG011598	MsaG018183	0.842261	5.356937e-58	2.246206e-55
MsaG011598	MsaG018452	0.834215	6.198615e-56	2.028066e-53
MsaG011598	MsaG018553	0.857698	2.664824e-62	1.900130e-59
MsaG011598	MsaG019182	0.807843	7.050634e-50	1.143092e-47
MsaG011598	MsaG020314	0.829204	1.052284e-54	2.976431e-52
MsaG011598	MsaG020868	0.813583	4.099546e-51	7.647684e-49
MsaG011598	MsaG020873	0.850664	2.796642e-60	1.550805e-57
MsaG011598	MsaG021088	0.820800	9.940529e-53	2.232977e-50
MsaG011598	MsaG021280	0.808691	4.660697e-50	7.712125e-48
MsaG011598	MsaG021405	0.823757	2.062134e-53	5.014764e-51
MsaG011598	MsaG021575	0.806816	1.161563e-49	1.837645e-47
MsaG011598	MsaG021896	0.824761	1.200787e-53	3.000886e-51
MsaG011598	MsaG022059	0.805563	2.125651e-49	3.264970e-47
MsaG011598	MsaG022441	0.802619	8.650907e-49	1.241280e-46
MsaG011598	MsaG022683	0.814279	2.884358e-51	5.475538e-49
MsaG011598	MsaG023591	0.826767	4.035334e-54	1.066032e-51
MsaG011598	MsaG023744	0.822492	4.054740e-53	9.528507e-51
MsaG011598	MsaG023856	0.809751	2.769059e-50	4.700414e-48
MsaG011598	MsaG024240	0.847092	2.713495e-59	1.332849e-56
MsaG011598	MsaG024239	0.801255	1.644196e-48	2.286911e-46
MsaG011598	MsaG027204	0.805095	2.662225e-49	4.044955e-47
MsaG011598	MsaG029340	0.806209	1.557797e-49	2.429599e-47
MsaG011598	MsaG030840	0.812695	6.407660e-51	1.169093e-48
MsaG011598	MsaG030928	0.803675	5.242824e-49	7.708084e-47
MsaG011598	MsaG031436	0.838128	6.353134e-57	2.339299e-54
MsaG011598	MsaG033354	0.825718	7.148598e-54	1.834300e-51
MsaG011598	MsaG033370	0.809467	3.184827e-50	5.369374e-48
MsaG011598	MsaG033371	0.801035	1.822767e-48	2.522728e-46
MsaG011598	MsaG034287	0.832963	1.268363e-55	3.999519e-53
MsaG011598	MsaG034288	0.823973	1.835943e-53	4.490841e-51
MsaG011598	MsaG034658	0.823244	2.715402e-53	6.511968e-51
MsaG011598	MsaG034659	0.807144	9.908490e-50	1.579752e-47
MsaG011598	MsaG035210	0.800308	2.560903e-48	3.486610e-46
MsaG011598	MsaG035270	0.842991	3.435805e-58	1.474938e-55
MsaG011598	MsaG036217	0.814266	2.904245e-51	5.511431e-49
MsaG011598	MsaG038415	0.832745	1.436336e-55	4.500530e-53
MsaG011598	MsaG038990	0.811212	1.343761e-50	2.363676e-48
MsaG011598	MsaG039739	0.805632	2.056714e-49	3.164296e-47
MsaG011598	MsaG039934	0.817655	5.129445e-52	1.061125e-49
MsaG011598	MsaG040077	0.827682	2.441204e-54	6.616531e-52
MsaG011598	MsaG040740	0.819507	1.959366e-52	4.253472e-50
MsaG011598	MsaG040775	0.835082	3.759874e-56	1.262545e-53
MsaG011598	MsaG040994	0.805686	2.004087e-49	3.087191e-47
MsaG011598	MsaG041368	0.801580	1.411926e-48	1.978353e-46
MsaG011598	MsaG042086	0.815987	1.209238e-51	2.396762e-49
MsaG011598	MsaG043665	0.826532	4.587426e-54	1.204011e-51
MsaG011598	MsaG043980	0.811898	9.547952e-51	1.708005e-48
MsaG011598	MsaG044131	0.834802	4.419644e-56	1.471699e-53
MsaG011598	MsaG044284	0.817168	6.594319e-52	1.347260e-49
MsaG011598	MsaG044323	0.814625	2.421203e-51	4.636223e-49
MsaG011598	MsaG044352	0.854075	3.020064e-61	1.887717e-58
MsaG011598	MsaG044354	0.851682	1.448277e-60	8.318986e-58
MsaG011598	MsaG045125	0.827121	3.323575e-54	8.867346e-52
MsaG011598	MsaG045446	0.809998	2.451114e-50	4.185636e-48
MsaG011598	MsaG046307	0.818602	3.140487e-52	6.657743e-50
MsaG011598	MsaG046384	0.808171	6.010186e-50	9.821135e-48
MsaG011598	MsaG046768	0.821220	7.964288e-53	1.809113e-50
MsaG011598	MsaG008553	0.801601	1.397793e-48	1.959549e-46
MsaG011598	MsaG008770	0.810349	2.060766e-50	3.549402e-48
MsaG011598	MsaG010012	0.813441	4.405194e-51	8.188616e-49
MsaG011598	MsaG014891	0.822165	4.827097e-53	1.124370e-50
MsaG011598	MsaG019920	0.804789	3.082363e-49	4.650175e-47
MsaG011598	MsaG032708	0.801762	1.295644e-48	1.823006e-46
MsaG011598	MsaG032859	0.809282	3.488061e-50	5.853947e-48
MsaG011598	MsaG031221	0.810921	1.552113e-50	2.710790e-48
MsaG011598	MsaG030523	0.809138	3.743614e-50	6.261442e-48
MsaG011598	MsaG033582	0.839028	3.729824e-57	1.412443e-54
MsaG011598	MsaG039770	0.806949	1.089013e-49	1.728282e-47
MsaG011598	MsaG035677	0.809222	3.591185e-50	6.018460e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011598	MtrunA17_Chr3g0077411	77.099	524	100	5	1	505	1	523	0.0	805
MsaG011598	MtrunA17_Chr3g0077461	65.086	464	140	7	37	497	23	467	0.0	578
MsaG011598	MtrunA17_Chr3g0077461	47.034	236	113	4	16	241	232	465	1.21e-61	209
MsaG011598	MtrunA17_Chr3g0077461	47.845	232	95	4	272	502	22	228	1.25e-59	203
MsaG011598	MtrunA17_Chr3g0077361	57.143	518	179	5	1	505	20	507	0.0	557
MsaG011598	MtrunA17_Chr4g0009491	57.647	425	155	4	35	444	11	425	7.41e-158	456
MsaG011598	MtrunA17_Chr4g0009491	53.846	208	79	4	271	478	11	201	2.33e-61	207
MsaG011598	MtrunA17_Chr4g0009491	50.952	210	77	3	16	200	220	428	9.27e-58	197
MsaG011598	MtrunA17_Chr3g0077381	57.339	436	131	6	35	444	34	440	2.87e-154	447
MsaG011598	MtrunA17_Chr3g0077381	50.246	203	82	3	16	200	242	443	3.45e-55	191
MsaG011598	MtrunA17_Chr5g0429931	61.538	247	74	2	272	505	10	248	7.25e-101	303
MsaG011598	MtrunA17_Chr5g0429931	53.814	236	84	3	37	248	11	245	2.98e-73	232
MsaG011598	MtrunA17_Chr3g0077451	61.088	239	81	3	271	505	10	240	3.05e-92	281
MsaG011598	MtrunA17_Chr3g0077451	55.022	229	87	4	35	248	10	237	8.23e-75	236
MsaG011598	MtrunA17_Chr3g0077421	60.194	206	73	2	301	503	1	200	1.15e-77	242
MsaG011598	MtrunA17_Chr3g0077421	48.500	200	86	4	65	248	1	199	2.75e-49	168
MsaG011598	MtrunA17_Chr3g0077441	60.194	206	73	2	301	503	1	200	1.15e-77	242
MsaG011598	MtrunA17_Chr3g0077441	48.500	200	86	4	65	248	1	199	2.75e-49	168
MsaG011598	MtrunA17_Chr3g0077431	60.287	209	71	3	301	505	1	201	1.64e-77	241
MsaG011598	MtrunA17_Chr3g0077431	51.759	199	80	4	65	248	1	198	1.40e-55	184
MsaG011598	MtrunA17_Chr3g0131891	29.054	296	154	8	256	502	18	306	7.96e-26	108
MsaG011598	MtrunA17_Chr3g0131891	24.252	301	160	9	14	250	12	308	5.78e-19	88.2
MsaG011598	MtrunA17_Chr1g0162441	41.121	107	63	0	257	363	7	113	1.35e-23	103
MsaG011598	MtrunA17_Chr1g0162441	43.434	99	56	0	21	119	7	105	1.56e-22	100
MsaG011598	MtrunA17_Chr1g0162441	34.307	137	73	4	370	500	268	393	3.82e-12	68.2
MsaG011598	MtrunA17_Chr7g0233531	27.106	273	148	6	273	502	2	266	7.05e-22	95.5
MsaG011598	MtrunA17_Chr7g0233531	33.333	84	56	0	37	120	2	85	4.40e-13	69.7
MsaG011598	MtrunA17_Chr7g0233561	26.349	315	162	8	250	502	9	315	4.41e-21	94.4
MsaG011598	MtrunA17_Chr7g0233561	32.759	116	74	1	20	131	17	132	1.69e-15	77.8
MsaG011598	MtrunA17_Chr4g0033961	40.385	104	62	0	254	357	3	106	1.29e-20	94.4
MsaG011598	MtrunA17_Chr4g0033961	38.182	110	68	0	18	127	3	112	3.95e-20	92.8
MsaG011598	MtrunA17_Chr4g0033961	33.094	139	76	4	370	502	264	391	2.50e-12	68.9
MsaG011598	MtrunA17_Chr3g0103171	27.306	271	143	8	272	498	5	265	1.30e-20	91.7
MsaG011598	MtrunA17_Chr3g0103171	44.578	83	46	0	37	119	6	88	3.24e-17	81.6
MsaG011598	MtrunA17_Chr3g0103181	27.206	272	166	7	256	498	11	279	2.19e-20	91.3
MsaG011598	MtrunA17_Chr3g0103181	41.000	100	57	1	20	119	11	108	2.89e-17	82.0
MsaG011598	MtrunA17_Chr5g0421921	42.017	119	60	2	385	503	3	112	3.37e-20	86.3
MsaG011598	MtrunA17_Chr5g0421731	42.017	119	60	2	385	503	3	112	3.37e-20	86.3
MsaG011598	MtrunA17_Chr5g0421851	42.308	130	61	4	375	503	71	187	2.07e-19	86.3
MsaG011598	MtrunA17_Chr7g0233521	26.007	273	151	7	273	502	2	266	1.52e-18	85.9
MsaG011598	MtrunA17_Chr7g0233521	37.209	86	54	0	37	122	2	87	4.25e-16	78.6
MsaG011598	MtrunA17_Chr1g0162411	37.383	107	65	1	257	363	7	111	4.54e-18	86.7
MsaG011598	MtrunA17_Chr1g0162411	41.414	99	56	1	21	119	7	103	2.52e-17	84.3
MsaG011598	MtrunA17_Chr7g0233571	36.893	103	65	0	20	122	9	111	9.64e-18	82.4
MsaG011598	MtrunA17_Chr7g0233571	35.833	120	74	1	256	375	9	125	1.51e-17	81.6
MsaG011598	MtrunA17_Chr1g0154161	26.117	291	154	9	256	498	29	306	1.19e-17	84.0
MsaG011598	MtrunA17_Chr1g0154161	24.221	289	154	8	20	249	29	311	2.41e-13	71.2
MsaG011598	MtrunA17_Chr1g0163071	25.000	304	135	9	273	500	2	288	1.28e-17	83.6
MsaG011598	MtrunA17_Chr1g0163071	23.585	318	202	11	37	346	2	286	5.17e-13	70.1
MsaG011598	MtrunA17_Chr5g0419201	31.056	161	109	1	250	408	9	169	1.98e-17	80.5
MsaG011598	MtrunA17_Chr5g0419201	35.354	99	64	0	21	119	16	114	3.40e-17	79.7
MsaG011598	MtrunA17_Chr8g0390841	22.394	518	297	17	35	499	53	518	6.35e-17	83.6
MsaG011598	MtrunA17_Chr8g0390841	26.144	153	106	1	257	409	39	184	1.45e-13	73.2
MsaG011598	MtrunA17_Chr3g0103151	39.000	100	59	1	20	119	11	108	8.07e-16	75.1
MsaG011598	MtrunA17_Chr3g0103151	33.607	122	79	1	256	377	11	130	2.48e-14	70.9
MsaG011598	MtrunA17_Chr7g0233541	25.000	292	147	8	273	502	2	283	1.09e-15	77.8
MsaG011598	MtrunA17_Chr7g0233541	34.821	112	66	3	37	142	2	112	3.49e-15	76.3
MsaG011598	MtrunA17_Chr3g0103191	40.404	99	57	1	21	119	12	108	5.40e-15	74.7
MsaG011598	MtrunA17_Chr3g0103191	38.614	101	60	1	257	357	12	110	3.12e-13	69.7
MsaG011598	MtrunA17_Chr1g0163221	27.562	283	167	10	256	500	10	292	3.22e-14	74.3
MsaG011598	MtrunA17_Chr1g0162421	44.643	56	31	0	37	92	9	64	2.14e-13	65.1
MsaG011598	MtrunA17_Chr1g0162421	39.655	58	35	0	271	328	7	64	6.36e-11	58.2
MsaG011598	MtrunA17_Chr1g0154071	26.336	262	144	9	256	505	27	251	2.86e-13	72.0
MsaG011598	MtrunA17_Chr6g0467351	36.275	102	64	1	256	356	14	115	8.65e-13	68.2
MsaG011598	MtrunA17_Chr1g0163131	33.036	112	72	2	256	367	17	125	2.55e-12	67.8
MsaG011598	MtrunA17_Chr1g0163101	25.683	183	126	5	241	417	1	179	2.60e-12	65.5
MsaG011598	MtrunA17_Chr4g0067431	23.667	300	174	9	256	500	14	313	1.85e-11	65.5
MsaG011598	MtrunA17_Chr1g0171611	24.812	266	170	8	255	497	7	265	6.41e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011598	AT3G18990.1	43.564	101	57	0	257	357	6	106	8.17e-22	97.1
MsaG011598	AT3G18990.1	38.384	99	61	0	21	119	6	104	1.82e-18	87.0
MsaG011598	AT3G18990.1	35.000	140	75	3	370	504	213	341	2.92e-13	71.6
MsaG011598	AT3G18990.2	43.564	101	57	0	257	357	6	106	1.63e-21	96.7
MsaG011598	AT3G18990.2	38.384	99	61	0	21	119	6	104	3.17e-18	87.0
MsaG011598	AT3G18990.2	34.752	141	76	3	370	505	213	342	5.84e-13	70.9
MsaG011598	AT4G01580.1	43.137	102	58	0	255	356	28	129	5.27e-21	91.3
MsaG011598	AT4G01580.1	37.615	109	68	0	13	121	22	130	1.31e-19	87.0
MsaG011598	AT3G18960.2	41.176	102	60	0	255	356	28	129	2.69e-20	89.4
MsaG011598	AT3G18960.2	36.697	109	69	0	13	121	22	130	2.40e-19	86.7
MsaG011598	AT3G18960.1	41.176	102	60	0	255	356	28	129	3.66e-20	89.4
MsaG011598	AT3G18960.1	36.697	109	69	0	13	121	22	130	4.59e-19	86.3
MsaG011598	AT1G49475.1	36.806	144	88	3	232	373	8	150	6.40e-19	85.1
MsaG011598	AT1G49475.1	38.400	125	74	2	5	129	20	141	2.89e-18	83.2
MsaG011598	AT1G26680.5	22.411	531	347	21	20	497	14	532	2.20e-16	82.8
MsaG011598	AT1G26680.6	22.411	531	347	21	20	497	14	532	2.76e-16	82.4
MsaG011598	AT3G18960.3	40.230	87	52	0	270	356	6	92	3.44e-15	73.9
MsaG011598	AT3G18960.3	37.647	85	53	0	37	121	9	93	8.58e-15	72.8
MsaG011598	AT1G49480.3	32.051	156	87	4	357	504	82	226	1.45e-13	70.5
MsaG011598	AT1G49480.1	32.051	156	87	4	357	504	82	226	1.45e-13	70.5
MsaG011598	AT1G49480.2	32.051	156	87	4	357	504	82	226	1.45e-13	70.5
MsaG011598	AT1G26680.3	22.509	542	344	23	20	497	14	543	1.51e-12	70.9
MsaG011598	AT2G24645.1	21.493	442	301	15	78	494	60	480	2.20e-12	69.7
MsaG011598	AT2G24645.3	21.493	442	301	15	78	494	68	488	2.23e-12	69.7
MsaG011598	AT2G24645.4	21.493	442	301	15	78	494	46	466	3.40e-12	68.9
MsaG011598	AT1G26680.2	22.476	525	333	22	37	497	16	530	1.32e-11	67.8
MsaG011598	AT4G31690.1	25.843	267	168	10	19	266	12	267	1.64e-11	65.5
MsaG011598	AT1G26680.4	22.506	391	266	14	20	384	14	393	4.77e-11	65.9
MsaG011598	AT1G26680.1	22.506	391	266	14	20	384	14	393	5.16e-11	65.9

Find 93 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTAGAATTTACGAGCTTTAT+AGG	0.186540	3:+7680324	None:intergenic
AGTAATATCCTTTGATCTTT+TGG	0.190901	3:+7681904	None:intergenic
GGATGGTCTTATTTGGAAAA+TGG	0.199369	3:-7680850	MsaT011598.1:CDS
CTGTTCTGGATGGTCTTATT+TGG	0.222871	3:-7680857	MsaT011598.1:CDS
GAATACTATTCCATTTATTA+TGG	0.231914	3:-7682067	MsaT011598.1:CDS
GAACGAAAAGAAGTGTTTAT+TGG	0.235783	3:+7681869	None:intergenic
ATGGAATCCGTAGATATCTT+AGG	0.242694	3:-7681601	MsaT011598.1:CDS
AACATTATTATAAAGTCTTC+TGG	0.259297	3:+7680912	None:intergenic
GGAAAGCAGTGGGAAGTTTC+TGG	0.267335	3:-7681665	MsaT011598.1:CDS
TATGACCTTCTTAAAATGTT+TGG	0.280661	3:+7681078	None:intergenic
TACTATTTCTTTGTCATGAA+TGG	0.283812	3:+7681045	None:intergenic
TAAGTAACAACCATAATAAA+TGG	0.285633	3:+7682057	None:intergenic
CTCCATTAGTCCTCCAAGTT+TGG	0.288512	3:+7681957	None:intergenic
GAAGACTTTATAATAATGTT+TGG	0.300221	3:-7680909	MsaT011598.1:CDS
GATGAGTTTATAACAAGATA+TGG	0.301447	3:-7682205	MsaT011598.1:CDS
GGCTTTATGCGTTGATGATC+TGG	0.305282	3:+7680260	None:intergenic
CGTTGTTACAGTTACTGTTC+TGG	0.322366	3:-7680871	MsaT011598.1:CDS
CCATTAGTTATTCGCATTGC+TGG	0.322446	3:+7681620	None:intergenic
CACTGCATAGTGGCTGGCTT+TGG	0.335321	3:+7681847	None:intergenic
AACGAAAAGAAGTGTTTATT+GGG	0.345284	3:+7681870	None:intergenic
TTTCTTATCCATTCCAAACT+TGG	0.371290	3:-7681970	MsaT011598.1:CDS
AAGACTTTATAATAATGTTT+GGG	0.374815	3:-7680908	MsaT011598.1:CDS
ATAAAGCTCGTAAATTCTAA+TGG	0.378322	3:-7680321	MsaT011598.1:CDS
TGAAGCATGAACGGAACATT+TGG	0.380851	3:+7681698	None:intergenic
TATTGTGGAGCAAATATATA+AGG	0.383893	3:+7680363	None:intergenic
TTCCAAACTTGGAGGACTAA+TGG	0.389564	3:-7681959	MsaT011598.1:CDS
GTGGGAAGTTTCTGGTGTAT+TGG	0.397299	3:-7681657	MsaT011598.1:CDS
AAGTGAGAGTCAAGGAAATA+AGG	0.405204	3:-7680588	MsaT011598.1:CDS
GAGCTCGGACACTTTATGTT+TGG	0.406751	3:+7681932	None:intergenic
TCCCTTCGTATTTGAAAGAC+AGG	0.408933	3:+7680742	None:intergenic
ACTATTTCTTTGTCATGAAT+GGG	0.411715	3:+7681046	None:intergenic
CCAGCAATGCGAATAACTAA+TGG	0.412619	3:-7681620	MsaT011598.1:CDS
TGCAGGCGGAGAAGGAAGTT+AGG	0.415021	3:-7681105	MsaT011598.1:intron
CTATTCCCGATGGTTGTGAT+TGG	0.421727	3:-7682153	MsaT011598.1:CDS
TATCTTGTTATAAACTCATC+TGG	0.429283	3:+7682208	None:intergenic
TATTCCCGATGGTTGTGATT+GGG	0.437439	3:-7682152	MsaT011598.1:CDS
TTTGTTTCTCCACTACTACT+TGG	0.437947	3:+7680654	None:intergenic
TTTGAATCTTTCTCCGGCTC+CGG	0.445887	3:+7682724	None:intergenic
TCTTTCTCCGGCTCCGGCGA+CGG	0.452971	3:+7682730	None:intergenic
GTAACTTGTAACACCACAAC+AGG	0.456427	3:+7681524	None:intergenic
ATGCGTTCCGTCGCCGGAGC+CGG	0.459509	3:-7682737	MsaT011598.1:CDS
TTAGCACAACTGGACTCTCC+TGG	0.465043	3:+7680145	None:intergenic
AGGCAGAACAATCTGTCATA+TGG	0.474080	3:-7680192	MsaT011598.1:CDS
GAGAAGATGCGTTCCGTCGC+CGG	0.476677	3:-7682743	MsaT011598.1:CDS
TGGAATCCGTAGATATCTTA+GGG	0.476796	3:-7681600	MsaT011598.1:CDS
CTTATCCATTCCAAACTTGG+AGG	0.477254	3:-7681967	MsaT011598.1:CDS
GCGACGGAACGCATCTTCTC+CGG	0.484385	3:+7682746	None:intergenic
ACATTTAGCTTCAGATATTG+TGG	0.490807	3:+7680348	None:intergenic
TATTGAATTGCAGGCGGAGA+AGG	0.498005	3:-7681113	MsaT011598.1:intron
AGATCATCAACGCATAAAGC+CGG	0.502000	3:-7680258	MsaT011598.1:CDS
GAATACTATTCTTTAAGATA+CGG	0.502713	3:-7680771	MsaT011598.1:CDS
TTCTTTGTCATGAATGGGCG+AGG	0.508053	3:+7681051	None:intergenic
ATGAGTTTATAACAAGATAT+GGG	0.513374	3:-7682204	MsaT011598.1:CDS
TCCTGTCTTTCAAATACGAA+GGG	0.519809	3:-7680743	MsaT011598.1:CDS
TTCATGCTTCAAAATTCTCA+AGG	0.523168	3:-7681686	MsaT011598.1:CDS
GCAGGCGGAGAAGGAAGTTA+GGG	0.528822	3:-7681104	MsaT011598.1:intron
TATTTGCATTGCTGATGACC+CGG	0.531078	3:+7680239	None:intergenic
TTGTGTGTTTGAGCTGATCC+AGG	0.531256	3:-7680163	MsaT011598.1:CDS
TGTTCCTAGTGAATTTGCTA+AGG	0.535865	3:-7681732	MsaT011598.1:CDS
AATCCTCACTGCATAGTGGC+TGG	0.548217	3:+7681841	None:intergenic
GATCATCAACGCATAAAGCC+GGG	0.549157	3:-7680257	MsaT011598.1:CDS
TTAGTCCTCCAAGTTTGGAA+TGG	0.549309	3:+7681962	None:intergenic
AATATCCCAATCACAACCAT+CGG	0.550561	3:+7682147	None:intergenic
ATATCCCAATCACAACCATC+GGG	0.551923	3:+7682148	None:intergenic
AGATCAAAGGATATTACTTG+TGG	0.558854	3:-7681899	MsaT011598.1:CDS
CTCTGCTTCCAAAAGATCAA+AGG	0.559021	3:-7681912	MsaT011598.1:CDS
TAAATTCTAATGGAGATGAG+TGG	0.570954	3:-7680311	MsaT011598.1:CDS
TTCCTGTCTTTCAAATACGA+AGG	0.575827	3:-7680744	MsaT011598.1:CDS
TTTACTTTAAGCTGATCAAG+AGG	0.576543	3:-7681550	MsaT011598.1:CDS
GTTACAGTTACTGTTCTGGA+TGG	0.579387	3:-7680867	MsaT011598.1:CDS
AGGGAAAACAAGTTATCAGA+TGG	0.579643	3:-7681581	MsaT011598.1:CDS
AAAATTCTCAAGGAAAGCAG+TGG	0.582056	3:-7681676	MsaT011598.1:CDS
GCTACAATTACTATTCCCGA+TGG	0.583610	3:-7682163	MsaT011598.1:CDS
GTAAAATCCTCACTGCATAG+TGG	0.585890	3:+7681837	None:intergenic
ATCAGCAATGCAAATAACGC+AGG	0.590408	3:-7680232	MsaT011598.1:CDS
AAGAAACAATGAAGACTCGC+CGG	0.590865	3:-7682765	None:intergenic
AAATTCTAATGGAGATGAGT+GGG	0.591055	3:-7680310	MsaT011598.1:CDS
TACTTAGATTTCAAGTACGA+AGG	0.598912	3:-7682040	MsaT011598.1:CDS
AAATGCTTATAAAAGGGCAG+AGG	0.610033	3:-7680549	MsaT011598.1:CDS
ACAAGTTACAACGTTTCGCA+CGG	0.620954	3:-7681510	MsaT011598.1:intron
TCTGGTGTATTGGATAGACC+AGG	0.621480	3:-7681647	MsaT011598.1:CDS
AAATTCTCAAGGAAAGCAGT+GGG	0.627522	3:-7681675	MsaT011598.1:CDS
TTTGAAACAAGTGAGAGTCA+AGG	0.633003	3:-7680596	MsaT011598.1:intron
GATATTGAACTAAAGAAATG+TGG	0.634743	3:-7682130	MsaT011598.1:CDS
AAAAGTCACGATATTTCGTG+TGG	0.648071	3:-7680124	MsaT011598.1:CDS
TGCTCCTTAGCAAATTCACT+AGG	0.648825	3:+7681728	None:intergenic
TCTTTGTCATGAATGGGCGA+GGG	0.652999	3:+7681052	None:intergenic
AAAATGGACTTGAAGAAATG+TGG	0.654458	3:-7680834	MsaT011598.1:CDS
GATCAAGAGGAAGCCTGTTG+TGG	0.656312	3:-7681537	MsaT011598.1:CDS
TCAGCAATGCAAATAACGCA+GGG	0.661161	3:-7680231	MsaT011598.1:CDS
TCTCACCGCATGTCTTCCCG+TGG	0.662233	3:+7680475	None:intergenic
AATCACCACGGGAAGACATG+CGG	0.676904	3:-7680480	MsaT011598.1:intron
GGACTTGAAGAAATGTGGCG+AGG	0.740403	3:-7680829	MsaT011598.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	7680107	7682779	7680107	ID=MsaG011598
Chr3	mRNA	7680107	7682779	7680107	ID=MsaT011598.1;Parent=MsaG011598
Chr3	exon	7680107	7680391	7680107	ID=MsaT011598.1.exon7;Parent=MsaT011598.1
Chr3	CDS	7680107	7680391	7680107	ID=cds.MsaT011598.1;Parent=MsaT011598.1
Chr3	exon	7680481	7680607	7680481	ID=MsaT011598.1.exon6;Parent=MsaT011598.1
Chr3	CDS	7680481	7680607	7680481	ID=cds.MsaT011598.1;Parent=MsaT011598.1
Chr3	exon	7680648	7680940	7680648	ID=MsaT011598.1.exon5;Parent=MsaT011598.1
Chr3	CDS	7680648	7680940	7680648	ID=cds.MsaT011598.1;Parent=MsaT011598.1
Chr3	exon	7681048	7681122	7681048	ID=MsaT011598.1.exon4;Parent=MsaT011598.1
Chr3	CDS	7681048	7681122	7681048	ID=cds.MsaT011598.1;Parent=MsaT011598.1
Chr3	exon	7681511	7681756	7681511	ID=MsaT011598.1.exon3;Parent=MsaT011598.1
Chr3	CDS	7681511	7681756	7681511	ID=cds.MsaT011598.1;Parent=MsaT011598.1
Chr3	exon	7681850	7682236	7681850	ID=MsaT011598.1.exon2;Parent=MsaT011598.1
Chr3	CDS	7681850	7682236	7681850	ID=cds.MsaT011598.1;Parent=MsaT011598.1
Chr3	exon	7682675	7682779	7682675	ID=MsaT011598.1.exon1;Parent=MsaT011598.1
Chr3	CDS	7682675	7682779	7682675	ID=cds.MsaT011598.1;Parent=MsaT011598.1

Gene Sequence

>MsaT011598.1

ATGAAGACTCGCCGGAGAAGATGCGTTCCGTCGCCGGAGCCGGAGAAAGATTCAAAACATTTTATGAAATACATACTTCCCCCTCCTGATCATACAAAAGAGATAGGAATTCCAGATGAGTTTATAACAAGATATGGGAATGAACTCGACAATGTTGCTACAATTACTATTCCCGATGGTTGTGATTGGGATATTGAACTAAAGAAATGTGGCAGTGAAGTTTTCTTTTTCAACAATTGGCAACAGTTTGTAGAATACTATTCCATTTATTATGGTTGTTACTTAGATTTCAAGTACGAAGGAAATTCAAAGTTTAATGTTGTTATATATGATGCAACTTCTGTTGAGATTTCTTATCCATTCCAAACTTGGAGGACTAATGGAGAACCAAACATAAAGTGTCCGAGCTCTGCTTCCAAAAGATCAAAGGATATTACTTGTGGAAGCAACCCAATAAACACTTCTTTTCGTTCCAAAGCCAGCCACTATGCATTTGTTCCTAGTGAATTTGCTAAGGAGCATCTGAAGCCAAATGTTCCGTTCATGCTTCAAAATTCTCAAGGAAAGCAGTGGGAAGTTTCTGGTGTATTGGATAGACCAGGAAAACCAGCAATGCGAATAACTAATGGAATCCGTAGATATCTTAGGGAAAACAAGTTATCAGATGGAGTTACTCTTTACTTTAAGCTGATCAAGAGGAAGCCTGTTGTGGTGTTACAAGTTACAACGTTTCGCACGGCGGAGAAGGAAGTTAGGGAATCCAAACATTTTAAGAAGGTCATACTTCCCTCGCCCATTCATGACAAAGAAATAAGAATTCCAGAAGACTTTATAATAATGTTTGGGAATGAACTCAAGAACGTTGTTACAGTTACTGTTCTGGATGGTCTTATTTGGAAAATGGACTTGAAGAAATGTGGCGAGGATGTTTACTTTTGCAACAAATGGCAACAGTTTGCAGAATACTATTCTTTAAGATACGGTTGTTTCCTGTCTTTCAAATACGAAGGGAATTCAAATTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAAATTTGCTATCCATCAAAAACTCCAAGTAGTAGTGGAGAAACAAACAATGATGAGAGTCAAGGAAATAAGGTCAAACACATGTCTAAAAATGCTTATAAAAGGGCAGAGGATGCTGCCAATGCATTCAACCCGAAAAACCCTCATTTTCGTTCAAAAATCACCACGGGAAGACATGCGTATGTTCCTTATATATTTGCTCCACAATATCTGAAGCTAAATGTTCCTATAAAGCTCGTAAATTCTAATGGAGATGAGTGGGAAGTTTTTTGTGCATTAGCATATAAATCCAGATCATCAACGCATAAAGCCGGGTCATCAGCAATGCAAATAACGCAGGGATTTTCTCAATTTATAAGGCAGAACAATCTGTCATATGGTGACTATTGTGTGTTTGAGCTGATCCAGGAGAGTCCAGTTGTGCTAAAAGTCACGATATTTCGTGTGGTTGACTATTGCGATTAA

Protein sequence

>MsaT011598.1

MKTRRRRCVPSPEPEKDSKHFMKYILPPPDHTKEIGIPDEFITRYGNELDNVATITIPDGCDWDIELKKCGSEVFFFNNWQQFVEYYSIYYGCYLDFKYEGNSKFNVVIYDATSVEISYPFQTWRTNGEPNIKCPSSASKRSKDITCGSNPINTSFRSKASHYAFVPSEFAKEHLKPNVPFMLQNSQGKQWEVSGVLDRPGKPAMRITNGIRRYLRENKLSDGVTLYFKLIKRKPVVVLQVTTFRTAEKEVRESKHFKKVILPSPIHDKEIRIPEDFIIMFGNELKNVVTVTVLDGLIWKMDLKKCGEDVYFCNKWQQFAEYYSLRYGCFLSFKYEGNSNFSVIIFDATSVEICYPSKTPSSSGETNNDESQGNKVKHMSKNAYKRAEDAANAFNPKNPHFRSKITTGRHAYVPYIFAPQYLKLNVPIKLVNSNGDEWEVFCALAYKSRSSTHKAGSSAMQITQGFSQFIRQNNLSYGDYCVFELIQESPVVLKVTIFRVVDYCD*