AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG011604

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011604 MtrunA17_Chr3g0077501 100.000 223 0 0 1 223 1 223 5.48e-167 459
MsaG011604 MtrunA17_Chr3g0097101 59.565 230 83 3 1 222 16 243 3.39e-94 275
MsaG011604 MtrunA17_Chr2g0284911 73.295 176 47 0 1 176 16 191 3.98e-91 268
MsaG011604 MtrunA17_Chr8g0380021 59.211 228 86 3 1 222 17 243 1.19e-90 266
MsaG011604 MtrunA17_Chr2g0279821 50.847 177 84 2 1 176 1 175 1.68e-53 172
MsaG011604 MtrunA17_Chr8g0351031 48.538 171 87 1 1 170 1 171 7.80e-51 164
MsaG011604 MtrunA17_Chr8g0351051 44.444 198 100 1 1 198 1 188 1.13e-50 165
MsaG011604 MtrunA17_Chr7g0246431 46.951 164 87 0 1 164 1 164 2.91e-48 157
MsaG011604 MtrunA17_Chr5g0411691 45.930 172 91 1 1 172 1 170 1.39e-47 156
MsaG011604 MtrunA17_Chr4g0049541 48.256 172 88 1 1 172 1 171 1.42e-47 156
MsaG011604 MtrunA17_Chr7g0220111 48.023 177 86 4 1 174 1 174 1.62e-47 157
MsaG011604 MtrunA17_Chr8g0351041 47.771 157 81 1 1 156 1 157 1.69e-47 154
MsaG011604 MtrunA17_Chr5g0420091 46.857 175 92 1 1 174 1 175 2.77e-47 155
MsaG011604 MtrunA17_Chr4g0061671 43.386 189 103 3 1 188 1 186 8.01e-47 153
MsaG011604 MtrunA17_Chr4g0057151 47.024 168 87 1 1 166 1 168 1.65e-46 152
MsaG011604 MtrunA17_Chr3g0122251 47.191 178 84 3 1 171 1 175 2.00e-45 151
MsaG011604 MtrunA17_Chr6g0455511 46.893 177 88 4 1 174 1 174 2.28e-45 151
MsaG011604 MtrunA17_Chr4g0061691 43.636 165 92 1 1 164 1 165 8.16e-43 144
MsaG011604 MtrunA17_Chr5g0420081 41.436 181 99 2 1 177 1 178 3.64e-40 137
MsaG011604 MtrunA17_Chr8g0366231 41.212 165 96 1 1 164 1 165 8.45e-40 137
MsaG011604 MtrunA17_Chr7g0220121 43.030 165 91 2 1 164 1 163 3.11e-39 135
MsaG011604 MtrunA17_Chr4g0020221 44.444 171 87 4 1 165 1 169 1.15e-38 134
MsaG011604 MtrunA17_Chr1g0204111 41.379 174 101 1 1 173 17 190 3.04e-38 133
MsaG011604 MtrunA17_Chr6g0474371 42.775 173 97 2 1 171 1 173 3.09e-38 131
MsaG011604 MtrunA17_Chr3g0125241 44.898 147 74 2 1 145 26 167 7.25e-36 125
MsaG011604 MtrunA17_Chr5g0427401 40.351 171 100 1 1 171 1 169 7.88e-36 126
MsaG011604 MtrunA17_Chr4g0018421 40.719 167 95 3 1 164 1 166 8.31e-35 122
MsaG011604 MtrunA17_Chr5g0412271 39.130 207 83 5 1 187 1 184 2.51e-34 122
MsaG011604 MtrunA17_Chr5g0412461 42.857 168 88 2 1 164 1 164 7.69e-34 121
MsaG011604 MtrunA17_Chr4g0049901 37.500 176 108 1 1 174 27 202 9.83e-34 121
MsaG011604 MtrunA17_Chr1g0164791 38.418 177 94 3 1 167 1 172 1.49e-33 120
MsaG011604 MtrunA17_Chr3g0142191 39.264 163 82 3 1 156 1 153 1.93e-31 115
MsaG011604 MtrunA17_Chr1g0159661 41.497 147 79 2 1 145 1 142 2.90e-30 110
MsaG011604 MtrunA17_Chr5g0404951 40.678 177 88 5 1 167 1 170 1.04e-29 110
MsaG011604 MtrunA17_Chr7g0246381 76.667 60 14 0 1 60 1 60 5.36e-29 103
MsaG011604 MtrunA17_Chr8g0377561 81.034 58 11 0 1 58 1 58 1.12e-28 103
MsaG011604 MtrunA17_Chr2g0308251 66.667 69 23 0 1 69 1 69 5.94e-28 101
MsaG011604 MtrunA17_Chr1g0173161 74.194 62 16 0 1 62 1 62 4.46e-27 99.4
MsaG011604 MtrunA17_Chr5g0427921 65.000 60 21 0 1 60 1 60 7.16e-25 92.8
MsaG011604 MtrunA17_Chr5g0425191 72.881 59 16 0 1 59 1 59 8.02e-24 91.7
MsaG011604 MtrunA17_Chr3g0134451 36.686 169 80 3 1 142 1 169 2.07e-23 95.9
MsaG011604 MtrunA17_Chr4g0044071 70.690 58 17 0 1 58 1 58 7.23e-23 89.4
MsaG011604 MtrunA17_Chr2g0292791 55.882 68 30 0 2 69 9 76 5.84e-21 87.8
MsaG011604 MtrunA17_Chr3g0099421 57.353 68 29 0 2 69 34 101 2.16e-20 86.7
MsaG011604 MtrunA17_Chr1g0208561 52.941 68 32 0 2 69 9 76 2.25e-20 85.9
MsaG011604 MtrunA17_Chr3g0089141 52.941 68 32 0 2 69 9 76 2.60e-20 85.9
MsaG011604 MtrunA17_Chr1g0208581 52.941 68 32 0 2 69 9 76 4.56e-20 85.1
MsaG011604 MtrunA17_Chr2g0325971 51.471 68 33 0 2 69 9 76 7.82e-20 84.3
MsaG011604 MtrunA17_Chr1g0169761 34.161 161 94 3 1 149 1 161 1.05e-19 82.8
MsaG011604 MtrunA17_Chr3g0099411 52.941 68 32 0 2 69 9 76 1.40e-19 83.6
MsaG011604 MtrunA17_Chr1g0206721 52.941 68 32 0 2 69 9 76 2.02e-19 83.6
MsaG011604 MtrunA17_Chr8g0355091 54.412 68 31 0 2 69 9 76 2.06e-19 83.6
MsaG011604 MtrunA17_Chr5g0427961 40.708 113 64 2 60 171 4 114 2.82e-19 81.6
MsaG011604 MtrunA17_Chr1g0206701 52.941 68 32 0 2 69 9 76 2.90e-19 83.2
MsaG011604 MtrunA17_Chr1g0166611 39.844 128 55 3 13 140 17 122 4.36e-19 80.1
MsaG011604 MtrunA17_Chr5g0419601 52.174 69 33 0 1 69 8 76 5.56e-19 82.4
MsaG011604 MtrunA17_Chr1g0206991 46.835 79 42 0 2 80 9 87 1.32e-18 80.1
MsaG011604 MtrunA17_Chr1g0187361 51.471 68 33 0 2 69 9 76 2.19e-18 80.9
MsaG011604 MtrunA17_Chr1g0149391 51.471 68 33 0 2 69 9 76 2.35e-18 80.5
MsaG011604 MtrunA17_Chr8g0376821 30.435 161 100 2 1 149 1 161 3.15e-18 79.0
MsaG011604 MtrunA17_Chr1g0188671 51.471 68 33 0 2 69 47 114 3.93e-18 80.9
MsaG011604 MtrunA17_Chr2g0317451 51.471 68 33 0 2 69 9 76 4.19e-18 80.1
MsaG011604 MtrunA17_Chr2g0317481 51.471 68 33 0 2 69 9 76 4.23e-18 80.1
MsaG011604 MtrunA17_Chr4g0018951 36.364 121 68 4 14 127 24 142 6.47e-18 77.8
MsaG011604 MtrunA17_Chr2g0333981 32.394 142 79 4 1 127 11 150 8.19e-18 77.8
MsaG011604 MtrunA17_Chr8g0379021 37.500 104 63 1 2 105 12 113 9.10e-18 77.8
MsaG011604 MtrunA17_Chr1g0175601 40.000 105 60 1 1 102 1 105 1.35e-17 77.4
MsaG011604 MtrunA17_Chr5g0422421 50.000 68 34 0 2 69 9 76 2.50e-17 77.8
MsaG011604 MtrunA17_Chr4g0052081 31.159 138 89 1 1 132 1 138 2.95e-17 76.3
MsaG011604 MtrunA17_Chr5g0422941 50.000 68 34 0 2 69 9 76 6.73e-17 76.6
MsaG011604 MtrunA17_Chr4g0074101 49.275 69 35 0 1 69 1 69 7.20e-17 75.9
MsaG011604 MtrunA17_Chr1g0175611 47.887 71 37 0 1 71 1 71 1.45e-16 74.3
MsaG011604 MtrunA17_Chr3g0119901 46.377 69 37 0 1 69 8 76 1.78e-16 75.1
MsaG011604 MtrunA17_Chr2g0300441 43.210 81 44 1 2 80 7 87 2.55e-16 75.1
MsaG011604 MtrunA17_Chr8g0357771 44.928 69 38 0 1 69 1 69 3.31e-16 73.6
MsaG011604 MtrunA17_Chr3g0085241 44.928 69 38 0 1 69 40 108 6.67e-16 74.3
MsaG011604 MtrunA17_Chr3g0089151 47.059 68 36 0 2 69 9 76 6.68e-16 71.6
MsaG011604 MtrunA17_Chr5g0417661 56.604 53 23 0 1 53 56 108 8.87e-16 71.2
MsaG011604 MtrunA17_Chr2g0300421 47.059 68 36 0 2 69 9 76 2.80e-15 70.9
MsaG011604 MtrunA17_Chr1g0180591 28.788 198 117 5 1 198 1 174 1.03e-14 69.7
MsaG011604 MtrunA17_Chr4g0052061 32.031 128 67 2 1 128 1 108 1.21e-14 68.9
MsaG011604 MtrunA17_Chr8g0356071 33.663 101 67 0 1 101 1 101 1.25e-14 68.9
MsaG011604 MtrunA17_Chr4g0060841 54.717 53 24 0 1 53 1 53 1.65e-14 71.6
MsaG011604 MtrunA17_Chr1g0206691 49.153 59 30 0 11 69 1 59 4.99e-14 68.6
MsaG011604 MtrunA17_Chr1g0187351 49.153 59 30 0 11 69 1 59 2.84e-13 62.8
MsaG011604 MtrunA17_Chr4g0071601 41.053 95 50 1 1 89 11 105 9.86e-12 61.6
MsaG011604 MtrunA17_Chr3g0111841 42.373 59 34 0 8 66 2 60 6.71e-11 56.6
MsaG011604 MtrunA17_Chr7g0238991 41.270 63 37 0 18 80 37 99 6.71e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011604 AT4G09960.6 74.783 230 51 2 1 223 2 231 1.35e-118 337
MsaG011604 AT4G09960.1 74.783 230 51 2 1 223 1 230 2.09e-118 337
MsaG011604 AT4G09960.5 74.783 230 51 2 1 223 11 240 4.20e-118 336
MsaG011604 AT4G09960.3 74.783 230 51 2 1 223 27 256 1.05e-117 336
MsaG011604 AT4G09960.4 73.504 234 51 3 1 223 96 329 4.83e-115 332
MsaG011604 AT4G09960.2 70.435 230 47 3 1 223 1 216 2.00e-107 308
MsaG011604 AT2G42830.1 63.134 217 66 1 1 217 16 218 2.65e-94 276
MsaG011604 AT4G18960.1 66.029 209 61 2 2 200 18 226 6.97e-94 275
MsaG011604 AT2G42830.2 62.557 219 66 2 1 217 16 220 2.65e-92 271
MsaG011604 AT3G58780.1 70.621 177 52 0 1 177 16 192 4.95e-91 268
MsaG011604 AT3G58780.5 70.621 177 52 0 1 177 22 198 5.79e-91 268
MsaG011604 AT3G58780.2 68.927 177 48 1 1 177 16 185 2.10e-85 253
MsaG011604 AT3G58780.3 61.881 202 52 1 1 177 16 217 4.48e-85 253
MsaG011604 AT3G58780.4 59.524 210 52 1 1 177 16 225 7.68e-84 251
MsaG011604 AT3G57230.1 44.393 214 111 4 1 211 1 209 3.59e-52 169
MsaG011604 AT3G57230.4 44.393 214 111 4 1 211 1 209 3.59e-52 169
MsaG011604 AT2G45660.1 48.171 164 85 0 1 164 1 164 1.10e-51 166
MsaG011604 AT2G45650.1 50.877 171 83 1 1 171 1 170 6.45e-51 166
MsaG011604 AT4G22950.2 48.538 171 87 1 1 171 1 170 1.14e-50 162
MsaG011604 AT2G45660.2 48.077 156 81 0 1 156 1 156 1.62e-50 162
MsaG011604 AT5G62165.3 44.118 170 95 0 1 170 1 170 3.28e-50 162
MsaG011604 AT5G62165.1 44.118 170 95 0 1 170 1 170 3.28e-50 162
MsaG011604 AT5G62165.2 44.118 170 95 0 1 170 1 170 3.28e-50 162
MsaG011604 AT4G22950.3 48.824 170 86 1 1 170 1 169 5.93e-50 162
MsaG011604 AT4G22950.1 48.824 170 86 1 1 170 1 169 5.93e-50 162
MsaG011604 AT5G62165.17 45.695 151 82 0 1 151 1 151 2.14e-48 156
MsaG011604 AT5G62165.12 45.695 151 82 0 1 151 1 151 2.14e-48 156
MsaG011604 AT5G62165.11 45.695 151 82 0 1 151 1 151 2.14e-48 156
MsaG011604 AT5G62165.10 47.651 149 78 0 1 149 1 149 2.44e-48 157
MsaG011604 AT5G62165.4 47.651 149 78 0 1 149 1 149 2.44e-48 157
MsaG011604 AT3G57230.2 53.741 147 65 2 1 146 1 145 5.86e-48 155
MsaG011604 AT5G62165.6 47.260 146 77 0 1 146 1 146 1.34e-47 154
MsaG011604 AT5G62165.9 47.260 146 77 0 1 146 1 146 1.34e-47 154
MsaG011604 AT5G62165.7 47.260 146 77 0 1 146 1 146 1.34e-47 154
MsaG011604 AT5G62165.8 47.260 146 77 0 1 146 1 146 1.34e-47 154
MsaG011604 AT5G62165.13 47.260 146 77 0 1 146 1 146 1.34e-47 154
MsaG011604 AT2G03710.2 47.222 180 86 3 1 175 1 176 2.42e-47 157
MsaG011604 AT2G03710.1 47.222 180 86 3 1 175 1 176 2.55e-47 157
MsaG011604 AT4G11880.2 50.955 157 75 2 1 156 1 156 2.68e-47 154
MsaG011604 AT4G11880.3 50.955 157 75 2 1 156 1 156 2.68e-47 154
MsaG011604 AT2G03710.3 47.727 176 83 3 1 171 1 172 7.54e-47 153
MsaG011604 AT4G37940.1 45.902 183 93 4 1 182 1 178 1.50e-46 154
MsaG011604 AT4G11880.4 53.061 147 67 2 1 146 1 146 1.53e-46 154
MsaG011604 AT4G11880.1 53.061 147 67 2 1 146 1 146 1.53e-46 154
MsaG011604 AT1G24260.1 44.751 181 97 2 1 178 1 181 1.60e-45 152
MsaG011604 AT5G15800.1 48.876 178 84 4 1 174 1 175 2.97e-45 151
MsaG011604 AT4G18960.3 51.592 157 66 2 54 200 56 212 3.16e-45 151
MsaG011604 AT4G18960.2 51.592 157 66 2 54 200 56 212 3.16e-45 151
MsaG011604 AT5G60910.1 43.503 177 99 1 1 176 1 177 3.73e-45 150
MsaG011604 AT1G24260.2 44.865 185 92 3 1 178 1 182 4.19e-45 151
MsaG011604 AT5G15800.2 48.876 178 84 4 1 174 1 175 7.38e-45 150
MsaG011604 AT1G26310.1 40.104 192 112 3 1 189 1 192 1.11e-44 150
MsaG011604 AT3G61120.1 45.665 173 92 2 1 173 1 171 1.68e-43 147
MsaG011604 AT3G02310.1 44.724 199 103 4 1 195 1 196 1.75e-43 147
MsaG011604 AT4G18960.4 60.169 118 47 0 54 171 56 173 2.89e-43 144
MsaG011604 AT4G37940.3 47.222 144 75 1 1 144 1 143 1.01e-42 142
MsaG011604 AT5G51860.2 41.954 174 100 1 1 173 1 174 1.21e-42 143
MsaG011604 AT4G37940.4 46.309 149 79 1 1 149 1 148 1.65e-42 143
MsaG011604 AT1G69120.2 39.665 179 105 3 1 177 1 178 2.04e-42 143
MsaG011604 AT1G24260.3 46.626 163 77 3 1 156 1 160 6.78e-42 142
MsaG011604 AT3G02310.2 48.276 174 83 4 1 170 1 171 7.52e-42 141
MsaG011604 AT5G13790.2 45.977 174 90 1 1 174 1 170 7.80e-42 143
MsaG011604 AT1G69120.1 39.665 179 105 3 1 177 1 178 8.68e-42 142
MsaG011604 AT5G51860.1 41.758 182 105 1 1 181 1 182 1.07e-41 141
MsaG011604 AT2G22630.1 41.530 183 101 3 1 182 1 178 2.66e-40 138
MsaG011604 AT2G22630.2 41.530 183 101 3 1 182 1 178 2.66e-40 138
MsaG011604 AT5G13790.1 45.402 174 88 2 1 174 1 167 3.78e-40 139
MsaG011604 AT5G51870.1 42.775 173 98 1 1 172 1 173 1.58e-39 135
MsaG011604 AT5G51870.4 43.902 164 91 1 1 163 1 164 4.37e-39 134
MsaG011604 AT5G51870.3 43.902 164 91 1 1 163 11 174 5.13e-39 134
MsaG011604 AT4G24540.1 36.493 211 134 0 1 211 1 211 1.92e-37 130
MsaG011604 AT2G14210.1 39.648 227 123 8 1 222 1 218 7.83e-37 129
MsaG011604 AT5G51870.2 45.578 147 79 1 1 146 1 147 8.44e-37 127
MsaG011604 AT2G14210.2 39.648 227 123 8 1 222 1 218 1.03e-36 129
MsaG011604 AT3G30260.1 42.384 151 86 1 1 150 1 151 2.09e-36 128
MsaG011604 AT5G51870.5 45.578 147 79 1 1 146 24 170 2.50e-36 127
MsaG011604 AT5G62165.14 62.500 88 33 0 1 88 1 88 2.97e-35 121
MsaG011604 AT1G71692.1 41.758 182 96 3 1 173 1 181 1.09e-34 123
MsaG011604 AT2G22540.3 36.150 213 130 4 1 211 1 209 5.15e-34 122
MsaG011604 AT2G22540.1 36.150 213 130 4 1 211 1 209 5.15e-34 122
MsaG011604 AT5G10140.4 40.127 157 85 2 1 156 1 149 7.23e-33 117
MsaG011604 AT5G10140.2 41.447 152 80 2 1 151 1 144 1.76e-32 116
MsaG011604 AT5G10140.1 41.447 152 80 2 1 151 1 144 1.86e-32 117
MsaG011604 AT3G57390.3 38.378 185 93 2 1 171 1 178 3.31e-32 117
MsaG011604 AT5G10140.3 41.447 152 80 2 1 151 1 144 3.78e-32 115
MsaG011604 AT3G57390.1 38.378 185 93 2 1 171 1 178 6.75e-32 117
MsaG011604 AT5G20240.1 40.397 151 83 2 1 149 1 146 6.88e-32 115
MsaG011604 AT2G22540.2 36.321 212 126 3 1 211 1 204 6.78e-31 114
MsaG011604 AT5G20240.2 41.549 142 76 2 1 140 1 137 8.06e-31 111
MsaG011604 AT5G23260.2 39.412 170 90 3 1 164 1 163 6.37e-30 112
MsaG011604 AT3G54340.1 40.373 161 83 3 1 156 1 153 1.09e-29 110
MsaG011604 AT5G23260.4 39.412 170 90 3 1 164 17 179 1.10e-29 111
MsaG011604 AT5G65050.2 36.628 172 100 3 1 171 1 164 1.37e-28 106
MsaG011604 AT5G23260.3 42.105 152 75 3 1 146 1 145 2.18e-28 107
MsaG011604 AT5G65050.3 36.416 173 101 3 1 172 1 165 2.47e-28 106
MsaG011604 AT5G65050.5 35.838 173 91 3 1 172 1 154 9.57e-28 104
MsaG011604 AT5G23260.1 41.060 151 76 3 1 145 17 160 2.27e-27 105
MsaG011604 AT5G65070.1 36.970 165 95 3 1 164 1 157 2.81e-27 103
MsaG011604 AT5G65060.1 34.682 173 104 2 1 172 1 165 8.66e-27 102
MsaG011604 AT5G65050.1 37.179 156 89 3 1 155 1 148 9.77e-27 101
MsaG011604 AT5G65060.3 34.884 172 103 2 1 171 1 164 1.04e-26 102
MsaG011604 AT5G65080.3 35.669 157 92 3 1 156 8 156 4.72e-26 100
MsaG011604 AT5G65060.2 34.104 173 94 3 1 172 1 154 1.26e-25 99.0
MsaG011604 AT5G65070.4 39.189 148 81 3 1 147 1 140 1.53e-25 97.4
MsaG011604 AT1G77980.1 36.216 185 79 4 1 146 1 185 1.63e-23 96.7
MsaG011604 AT5G65070.2 34.031 191 96 4 1 164 1 188 4.78e-23 93.6
MsaG011604 AT5G65070.5 57.746 71 29 1 1 70 1 71 7.03e-23 92.4
MsaG011604 AT1G22130.1 64.286 70 24 1 1 69 1 70 7.36e-23 94.7
MsaG011604 AT1G77080.11 36.628 172 100 2 1 171 1 164 7.65e-23 91.3
MsaG011604 AT1G77080.5 36.207 174 102 2 1 173 1 166 8.98e-23 91.3
MsaG011604 AT5G65080.2 34.416 154 93 2 1 154 8 153 1.43e-22 91.7
MsaG011604 AT5G65070.3 63.934 61 22 0 1 61 1 61 1.45e-22 92.0
MsaG011604 AT1G77080.4 36.628 172 100 2 1 171 1 164 1.75e-22 90.9
MsaG011604 AT1G77950.3 29.947 187 90 2 1 146 1 187 6.11e-20 85.5
MsaG011604 AT1G77950.2 29.947 187 90 2 1 146 1 187 6.11e-20 85.5
MsaG011604 AT1G77950.1 29.947 187 90 2 1 146 1 187 6.11e-20 85.5
MsaG011604 AT1G77950.4 29.947 187 90 2 1 146 1 187 6.11e-20 85.5
MsaG011604 AT1G77080.8 35.385 195 98 5 1 171 1 191 8.77e-20 84.7
MsaG011604 AT1G31140.1 35.811 148 92 2 1 146 1 147 2.04e-19 83.2
MsaG011604 AT1G31140.2 35.897 156 83 3 1 146 1 149 5.47e-19 82.4
MsaG011604 AT1G77080.2 35.465 172 98 3 1 171 1 160 5.99e-19 81.6
MsaG011604 AT2G34440.1 30.719 153 91 1 1 138 1 153 7.58e-19 80.9
MsaG011604 AT1G01530.1 39.474 114 58 2 1 114 6 108 5.20e-18 80.1
MsaG011604 AT1G77080.12 35.669 157 88 3 1 156 1 145 1.59e-17 76.6
MsaG011604 AT5G60440.1 51.471 68 33 0 2 69 7 74 2.99e-17 79.0
MsaG011604 AT1G65360.1 32.381 105 68 1 1 102 6 110 3.28e-17 77.8
MsaG011604 AT1G72350.1 57.353 68 27 1 2 69 43 108 7.68e-17 76.6
MsaG011604 AT4G37435.1 59.649 57 23 0 1 57 1 57 8.42e-17 75.9
MsaG011604 AT1G18750.4 62.264 53 20 0 1 53 1 53 1.30e-16 78.2
MsaG011604 AT1G18750.1 62.264 53 20 0 1 53 1 53 1.52e-16 77.8
MsaG011604 AT1G18750.3 62.264 53 20 0 1 53 1 53 1.70e-16 77.8
MsaG011604 AT2G24840.1 46.377 69 37 0 1 69 62 130 5.37e-16 75.1
MsaG011604 AT3G66656.1 45.714 70 38 0 1 70 1 70 5.88e-16 73.2
MsaG011604 AT4G36590.1 46.154 78 40 1 2 79 7 82 7.12e-16 74.3
MsaG011604 AT3G57230.5 37.097 124 71 3 54 172 16 137 1.49e-15 72.8
MsaG011604 AT3G57230.3 37.097 124 71 3 54 172 16 137 1.49e-15 72.8
MsaG011604 AT2G03060.3 58.491 53 22 0 1 53 1 53 2.27e-15 74.3
MsaG011604 AT2G03060.7 58.491 53 22 0 1 53 1 53 2.27e-15 74.3
MsaG011604 AT2G03060.1 58.491 53 22 0 1 53 1 53 2.27e-15 74.3
MsaG011604 AT2G03060.2 58.491 53 22 0 1 53 1 53 2.68e-15 74.3
MsaG011604 AT3G04100.1 40.580 69 41 0 2 70 14 82 2.82e-14 69.3
MsaG011604 AT1G69540.1 52.830 53 25 0 1 53 1 53 2.32e-13 68.6
MsaG011604 AT1G47760.1 36.111 108 68 1 1 108 1 107 2.90e-13 66.2
MsaG011604 AT1G69540.2 52.830 53 25 0 1 53 1 53 3.30e-13 68.2
MsaG011604 AT4G37940.2 36.885 122 71 4 62 182 1 117 4.47e-13 65.5
MsaG011604 AT1G28460.1 42.647 68 39 0 2 69 8 75 2.88e-12 63.5
MsaG011604 AT1G29962.1 41.176 68 40 0 2 69 8 75 2.91e-12 63.5

Find 36 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCAAGTAAACATGGTTTC+TGG 0.260849 3:-7729191 MsaT011604.1:CDS
AACAATTGATAGGTACAAAA+AGG 0.341788 3:-7730914 MsaT011604.1:CDS
TCACCATCTTCCATCATGTT+TGG 0.358998 3:+7729119 None:intergenic
TTTCACAGTGAGTGTGCTTA+AGG 0.366395 3:+7729981 None:intergenic
GATAAGAAGATTCTTCATCT+TGG 0.377751 3:-7729077 MsaT011604.1:CDS
GAATCTTCTTATCTGATTGA+TGG 0.379150 3:+7729087 None:intergenic
CTTTCAGCATGAGATGCTAT+TGG 0.383142 3:-7729734 MsaT011604.1:intron
AAATCTTTGTCTTCGGACTA+AGG 0.401554 3:-7729553 MsaT011604.1:intron
ATAAGAAGATTCTTCATCTT+GGG 0.415387 3:-7729076 MsaT011604.1:CDS
AGATGCTGCAAAATTCTAAC+AGG 0.418341 3:-7730699 MsaT011604.1:intron
GAATTGAGAATACAACAAAT+AGG 0.419275 3:-7734696 MsaT011604.1:CDS
TTCATAAAGTCTGCCACGGC+TGG 0.428035 3:+7734579 None:intergenic
AAAATGAAAATCTTTGTCTT+CGG 0.435943 3:-7729560 MsaT011604.1:CDS
AAATTGAGTACTTTCAGAAA+AGG 0.442530 3:-7729708 MsaT011604.1:CDS
GCATAAGGTCAACAATTGAT+AGG 0.465104 3:-7730924 MsaT011604.1:CDS
TTTCAATTGTAGGCACTTGA+TGG 0.468239 3:-7730010 MsaT011604.1:intron
AATTGAGTACTTTCAGAAAA+GGG 0.471433 3:-7729707 MsaT011604.1:intron
TTTCTTCAATCCAAACATGA+TGG 0.476759 3:-7729129 MsaT011604.1:CDS
AGCGTTAATTTCAGTGGTAG+TGG 0.506917 3:+7730867 None:intergenic
TTCAATTGTAGGCACTTGAT+GGG 0.517931 3:-7730009 MsaT011604.1:intron
AATTACGAGATGCTAATGCT+TGG 0.521575 3:+7729150 None:intergenic
TGTGAAAGAACTGAAGCAGC+TGG 0.529365 3:-7729965 MsaT011604.1:CDS
CTTCTTATCTGATTGATGGT+AGG 0.531278 3:+7729091 None:intergenic
AATCCAAACATGATGGAAGA+TGG 0.532231 3:-7729122 MsaT011604.1:CDS
ACTTTCTGCAAGAGAAGGAA+TGG 0.533587 3:-7734667 MsaT011604.1:CDS
TACCACTGAAATTAACGCTC+AGG 0.540147 3:-7730863 MsaT011604.1:intron
CTCATTGTCTTCTCCAGCCG+TGG 0.543041 3:-7734592 MsaT011604.1:CDS
TTCCTTATAGGAGATTGAGC+TGG 0.555698 3:-7729583 MsaT011604.1:intron
CCAGAAACCATGTTTACTTG+AGG 0.572702 3:+7729191 None:intergenic
CTGGAGAACAGACTTGAAAG+AGG 0.573335 3:-7729946 MsaT011604.1:CDS
AATATTCATAAAGTCTGCCA+CGG 0.594282 3:+7734575 None:intergenic
TACCTGAGCGTTAATTTCAG+TGG 0.595921 3:+7730861 None:intergenic
AAGTGACTTTCTGCAAGAGA+AGG 0.603801 3:-7734672 MsaT011604.1:CDS
GAGGCTTCCTCAAGTAAACA+TGG 0.606537 3:-7729198 MsaT011604.1:CDS
TGCAGATAAATGATGTTGAG+AGG 0.609365 3:-7729217 MsaT011604.1:intron
GTTAATTTCAGTGGTAGTGG+TGG 0.623708 3:+7730870 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 7729073 7734746 7729073 ID=MsaG011604
Chr3 mRNA 7729073 7734746 7729073 ID=MsaT011604.1;Parent=MsaG011604
Chr3 exon 7729073 7729234 7729073 ID=MsaT011604.1.exon7;Parent=MsaT011604.1
Chr3 CDS 7729073 7729234 7729073 ID=cds.MsaT011604.1;Parent=MsaT011604.1
Chr3 exon 7729554 7729595 7729554 ID=MsaT011604.1.exon6;Parent=MsaT011604.1
Chr3 CDS 7729554 7729595 7729554 ID=cds.MsaT011604.1;Parent=MsaT011604.1
Chr3 exon 7729708 7729749 7729708 ID=MsaT011604.1.exon5;Parent=MsaT011604.1
Chr3 CDS 7729708 7729749 7729708 ID=cds.MsaT011604.1;Parent=MsaT011604.1
Chr3 exon 7729921 7730020 7729921 ID=MsaT011604.1.exon4;Parent=MsaT011604.1
Chr3 CDS 7729921 7730020 7729921 ID=cds.MsaT011604.1;Parent=MsaT011604.1
Chr3 exon 7730700 7730761 7730700 ID=MsaT011604.1.exon3;Parent=MsaT011604.1
Chr3 CDS 7730700 7730761 7730700 ID=cds.MsaT011604.1;Parent=MsaT011604.1
Chr3 exon 7730864 7730945 7730864 ID=MsaT011604.1.exon2;Parent=MsaT011604.1
Chr3 CDS 7730864 7730945 7730864 ID=cds.MsaT011604.1;Parent=MsaT011604.1
Chr3 exon 7734565 7734746 7734565 ID=MsaT011604.1.exon1;Parent=MsaT011604.1
Chr3 CDS 7734565 7734746 7734565 ID=cds.MsaT011604.1;Parent=MsaT011604.1
Gene Sequence

>MsaT011604.1

ATGGGGAGGGGAAAGATTGAGATAAAAAGAATTGAGAATACAACAAATAGGCAAGTGACTTTCTGCAAGAGAAGGAATGGACTTCTGAAGAAAGCTTATGAGCTATCAGTTTTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCCAGCCGTGGCAGACTTTATGAATATTCAAACAACAACATAAGGTCAACAATTGATAGGTACAAAAAGGCTTGTTCAGATCATTCAAGTACCACCACTACCACTGAAATTAACGCTCAGTATTATCAGCAAGAATCTGCAAAGCTGAGACAACAAATACAGATGCTGCAAAATTCTAACAGGCACTTGATGGGTGATGCCTTAAGCACACTCACTGTGAAAGAACTGAAGCAGCTGGAGAACAGACTTGAAAGAGGAATCACTAGAATTAGATCTAAGAAACATGAGATGCTATTGGCTGAAATTGAGTACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAAAATCTTTGTCTTCGGACTAAGATAAATGATGTTGAGAGGCTTCCTCAAGTAAACATGGTTTCTGGACAAGAGCTGAATGCAATCCAAGCATTAGCATCTCGTAATTTCTTCAATCCAAACATGATGGAAGATGGTGAAACTTCCTACCATCAATCAGATAAGAAGATTCTTCATCTTGGGTAA
Protein sequence

>MsaT011604.1

MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIDRYKKACSDHSSTTTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKINDVERLPQVNMVSGQELNAIQALASRNFFNPNMMEDGETSYHQSDKKILHLG*