AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG011637


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011637 MtrunA17_Chr3g0077811 89.474 114 12 0 1 114 6 119 1.42e-60 181
MsaG011637 MtrunA17_Chr3g0077881 74.227 97 24 1 1 96 1 97 1.78e-45 145
MsaG011637 MtrunA17_Chr3g0077881 37.838 111 39 1 4 114 95 175 3.49e-13 62.8
MsaG011637 MtrunA17_Chr3g0077891 75.258 97 23 1 1 96 1 97 4.74e-42 136
MsaG011637 MtrunA17_Chr3g0077891 40.541 111 36 1 4 114 95 175 1.34e-16 71.6
MsaG011637 MtrunA17_Chr3g0077941 73.958 96 25 0 1 96 1 96 7.64e-40 131
MsaG011637 MtrunA17_Chr3g0077941 40.541 111 36 1 4 114 94 174 2.28e-16 70.9
MsaG011637 MtrunA17_Chr3g0077911 64.706 85 26 1 1 85 1 81 1.31e-30 107
MsaG011637 MtrunA17_Chr3g0077911 46.575 73 39 0 2 74 84 156 7.82e-14 63.9
MsaG011637 MtrunA17_Chr3g0077861 62.353 85 28 1 1 85 1 81 4.98e-28 100
MsaG011637 MtrunA17_Chr3g0077861 46.575 73 39 0 2 74 84 156 4.44e-14 65.1
MsaG011637 MtrunA17_Chr1g0205811 51.685 89 40 2 3 91 9 94 5.56e-23 86.7
MsaG011637 MtrunA17_Chr1g0205821 50.588 85 39 2 6 90 11 92 8.05e-19 77.4
MsaG011637 MtrunA17_Chr1g0205821 42.857 77 43 1 7 83 98 173 1.44e-13 63.9
MsaG011637 MtrunA17_Chr8g0364231 52.564 78 36 1 4 81 38 114 8.08e-18 78.2
MsaG011637 MtrunA17_Chr5g0415031 53.333 75 34 1 4 78 39 112 5.05e-17 75.9
MsaG011637 MtrunA17_Chr1g0206781 44.944 89 47 2 2 90 5 91 4.14e-16 68.9
MsaG011637 MtrunA17_Chr1g0206771 49.296 71 35 1 6 76 93 162 9.12e-16 69.7
MsaG011637 MtrunA17_Chr1g0206771 38.961 77 46 1 5 81 13 88 2.62e-11 57.8
MsaG011637 MtrunA17_Chr1g0205801 45.349 86 44 2 6 91 10 92 1.08e-15 67.8
MsaG011637 MtrunA17_Chr1g0205831 44.444 90 48 2 11 100 76 163 1.21e-15 69.3
MsaG011637 MtrunA17_Chr1g0205831 48.214 56 29 0 23 78 16 71 1.50e-11 58.5
MsaG011637 MtrunA17_Chr1g0205861 39.080 87 52 1 4 90 12 97 1.87e-15 67.4
MsaG011637 MtrunA17_Chr7g0218891 42.857 77 43 1 8 83 185 261 2.42e-15 70.1
MsaG011637 MtrunA17_Chr7g0218891 37.079 89 55 1 8 95 99 187 2.16e-13 64.7
MsaG011637 MtrunA17_Chr7g0218891 48.214 56 29 0 24 79 30 85 8.15e-12 60.5
MsaG011637 MtrunA17_Chr6g0452001 45.679 81 43 1 4 84 59 138 2.88e-15 70.9
MsaG011637 MtrunA17_Chr2g0328701 39.583 96 53 2 6 101 27 117 7.79e-14 63.2
MsaG011637 MtrunA17_Chr8g0364021 46.753 77 40 1 2 78 38 113 1.73e-13 64.7
MsaG011637 MtrunA17_Chr4g0075861 39.583 96 53 2 6 101 10 100 5.64e-13 63.9
MsaG011637 MtrunA17_Chr4g0075971 39.583 96 53 2 6 101 10 100 6.73e-13 63.9
MsaG011637 MtrunA17_Chr6g0452021 41.250 80 46 1 2 81 37 115 3.31e-12 62.0
MsaG011637 MtrunA17_Chr1g0209201 40.000 70 40 1 8 77 16 83 2.85e-11 57.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011637 AT1G70060.2 52.000 75 35 1 4 78 10 83 4.95e-17 76.3
MsaG011637 AT1G70060.1 52.000 75 35 1 4 78 10 83 4.95e-17 76.3
MsaG011637 AT1G24190.3 48.000 75 38 1 4 78 10 83 4.70e-16 73.6
MsaG011637 AT1G24190.1 48.000 75 38 1 4 78 10 83 4.88e-16 73.6
MsaG011637 AT1G24190.2 48.000 75 38 1 4 78 10 83 5.22e-16 73.2
MsaG011637 AT5G15025.1 45.882 85 41 2 4 88 43 122 5.95e-16 68.9
MsaG011637 AT3G01320.1 48.148 81 40 2 4 84 53 131 4.01e-15 70.9
MsaG011637 AT3G01320.2 48.148 81 40 2 4 84 53 131 4.09e-15 70.9
MsaG011637 AT1G59890.4 49.296 71 35 1 8 78 45 114 3.59e-14 68.2
MsaG011637 AT1G59890.1 49.296 71 35 1 8 78 45 114 3.77e-14 68.2
MsaG011637 AT1G59890.2 49.296 71 35 1 8 78 45 114 3.77e-14 68.2
MsaG011637 AT1G59890.3 49.296 71 35 1 8 78 45 114 3.80e-14 68.2
MsaG011637 AT5G15020.2 46.667 75 39 1 4 78 48 121 4.66e-14 67.8
MsaG011637 AT5G15020.1 46.667 75 39 1 4 78 48 121 4.70e-14 67.8
MsaG011637 AT1G24200.1 48.611 72 36 1 5 76 11 81 2.04e-13 63.9
MsaG011637 AT1G70030.3 41.379 87 50 1 2 88 16 101 2.85e-13 62.0
MsaG011637 AT1G70030.2 41.860 86 49 1 2 87 16 100 8.93e-13 61.2
MsaG011637 AT1G10450.3 47.887 71 36 1 8 78 84 153 1.50e-12 63.5
MsaG011637 AT1G10450.2 47.887 71 36 1 8 78 33 102 1.57e-12 63.5
MsaG011637 AT1G10450.1 47.887 71 36 1 8 78 33 102 1.57e-12 63.5
MsaG011637 AT1G70030.1 42.353 85 48 1 2 86 5 88 1.68e-12 60.8
MsaG011637 AT1G24230.1 42.857 70 40 0 4 73 10 79 4.90e-12 61.2
MsaG011637 AT4G12020.11 39.286 84 48 2 1 84 301 381 8.28e-12 61.2
MsaG011637 AT4G12020.2 39.286 84 48 2 1 84 301 381 1.69e-11 60.5
MsaG011637 AT4G12020.5 39.286 84 48 2 1 84 234 314 1.73e-11 60.5
MsaG011637 AT4G12020.10 39.286 84 48 2 1 84 301 381 1.73e-11 60.5
MsaG011637 AT4G12020.3 39.286 84 48 2 1 84 301 381 1.74e-11 60.5
MsaG011637 AT4G12020.4 39.286 84 48 2 1 84 301 381 1.74e-11 60.5
MsaG011637 AT4G12020.6 39.286 84 48 2 1 84 301 381 1.81e-11 60.5
MsaG011637 AT4G12020.8 39.286 84 48 2 1 84 301 381 1.81e-11 60.5
MsaG011637 AT4G12020.7 39.286 84 48 2 1 84 301 381 1.81e-11 60.5
MsaG011637 AT4G12020.1 39.286 84 48 2 1 84 301 381 1.92e-11 60.5
MsaG011637 AT4G12020.9 39.286 84 48 2 1 84 301 381 1.92e-11 60.5
MsaG011637 AT1G27220.1 43.056 72 40 1 5 76 11 81 9.02e-11 57.0

Find 23 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCAAAATTAAATCTTCA+TGG 0.305008 3:+8371421 None:intergenic
CTCTCCCTTGATGATGCATT+AGG 0.309761 3:-8371585 MsaT011637.1:CDS
TCAGCATTAAAATGTAAGTT+TGG 0.340713 3:-8371555 MsaT011637.1:CDS
TCTCCCTTGATGATGCATTA+GGG 0.364954 3:-8371584 MsaT011637.1:CDS
ATTAAGAGTGTACGAGTTGT+TGG 0.382597 3:-8371448 MsaT011637.1:CDS
TAGTTGATGTAACAAAGATA+TGG 0.413209 3:-8370441 MsaT011637.1:CDS
GTAAGTTTGGATATGAGAAA+AGG 0.430304 3:-8371542 MsaT011637.1:CDS
TAAGTTTGGATATGAGAAAA+GGG 0.432227 3:-8371541 MsaT011637.1:CDS
AGTTTGATTTCATATTTAGT+TGG 0.445957 3:+8371384 None:intergenic
TTCATATTTAGTTGGCAAGA+AGG 0.469109 3:+8371392 None:intergenic
ATATGAAATCAAACTTCCAT+TGG 0.479714 3:-8371376 MsaT011637.1:CDS
ACAAATTATGAAGGATTACA+AGG 0.516015 3:-8371499 MsaT011637.1:CDS
AATCACACCTTCAGTTCAGC+TGG 0.522086 3:-8371280 MsaT011637.1:CDS
GGCTGAAAGAATTGATGCTA+GGG 0.536935 3:-8371478 MsaT011637.1:CDS
AGGCTGAAAGAATTGATGCT+AGG 0.540522 3:-8371479 MsaT011637.1:CDS
TTAACCCTAATGCATCATCA+AGG 0.572182 3:+8371580 None:intergenic
CCAGTGTCCAGCTGAACTGA+AGG 0.581775 3:+8371273 None:intergenic
CCTTCAGTTCAGCTGGACAC+TGG 0.584057 3:-8371273 MsaT011637.1:intron
TTATCGTCATCACGATCCAA+TGG 0.595772 3:+8371360 None:intergenic
TAACCCTAATGCATCATCAA+GGG 0.615763 3:+8371581 None:intergenic
GACGATAATGAAGAACAAGA+TGG 0.621555 3:-8371345 MsaT011637.1:CDS
AGAGTGTACGAGTTGTTGGA+CGG 0.625456 3:-8371444 MsaT011637.1:CDS
TGATGTAACAAAGATATGGA+AGG 0.627295 3:-8370437 MsaT011637.1:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 8369787 8371616 8369787 ID=MsaG011637
Chr3 mRNA 8369787 8371616 8369787 ID=MsaT011637.1;Parent=MsaG011637
Chr3 exon 8369787 8369798 8369787 ID=MsaT011637.1.exon3;Parent=MsaT011637.1
Chr3 CDS 8369787 8369798 8369787 ID=cds.MsaT011637.1;Parent=MsaT011637.1
Chr3 exon 8370438 8370460 8370438 ID=MsaT011637.1.exon2;Parent=MsaT011637.1
Chr3 CDS 8370438 8370460 8370438 ID=cds.MsaT011637.1;Parent=MsaT011637.1
Chr3 exon 8371274 8371616 8371274 ID=MsaT011637.1.exon1;Parent=MsaT011637.1
Chr3 CDS 8371274 8371616 8371274 ID=cds.MsaT011637.1;Parent=MsaT011637.1
Gene Sequence

>MsaT011637.1

ATGAAGAATCTCTCCCTTGATGATGCATTAGGGTTAATCTCAGCATTAAAATGTAAGTTTGGATATGAGAAAAGGGAAAAATATGAATCTTTTCTACAAATTATGAAGGATTACAAGGCTGAAAGAATTGATGCTAGGGTTGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTTGAGACTCAACACCTTCTTGCCAACTAAATATGAAATCAAACTTCCATTGGATCGTGATGACGATAATGAAGAACAAGATGGTCGAATGACAAAGACAAATATCAAAGTGCTAAAGAAATATCGAATCACACCTTCAGTTCAGCTGGACACTGTTGATGTAACAAAGATATGGAAGGGGAAGCCATGA

Protein sequence

>MsaT011637.1

MKNLSLDDALGLISALKCKFGYEKREKYESFLQIMKDYKAERIDARVVKLRVYELLDGHEDLILRLNTFLPTKYEIKLPLDRDDDNEEQDGRMTKTNIKVLKKYRITPSVQLDTVDVTKIWKGKP*