AlfalfaGEDB | MsaG011640

M. sativa ssp. caerulea / MsaG011640

KEGG: K07560 K11644
GO: GO:0000003 GO:0001708 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0007275 GO:0007423 GO:0007548 GO:0008150 GO:0009653 GO:0009791 GO:0009887 GO:0009987 GO:0022414 GO:0030154 GO:0030539 GO:0032501 GO:0032502 GO:0035112 GO:0040011 GO:0040025 GO:0045165 GO:0046661 GO:0048513 GO:0048569 GO:0048608 GO:0048731 GO:0048806 GO:0048808 GO:0048856 GO:0048869 GO:0061458 GO:0090596 GO:0090597 GO:0090598
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011640	KEH32793.1	96.571	175	6	0	1	175	1	175	1.84e-111	325

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011640	sp\|Q9SRH9\|SNL1_ARATH	41.875	160	87	3	2	161	51	204	2.45e-24	102
MsaG011640	sp\|Q9SRH9\|SNL1_ARATH	50.000	74	36	1	94	167	53	125	4.12e-15	75.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011640	tr\|A0A072UUQ7\|A0A072UUQ7_MEDTR	96.571	175	6	0	1	175	1	175	8.79e-112	325

TFs/TRs:

Gene ID	Type	Classification
MsaG011640	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG011640	MsaG036442	0.804628	3.327885e-49	5.001858e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011640	MtrunA17_Chr3g0077941	96.571	175	6	0	1	175	1	175	1.69e-115	325
MsaG011640	MtrunA17_Chr3g0077881	89.205	176	18	1	1	175	1	176	2.80e-108	306
MsaG011640	MtrunA17_Chr3g0077891	89.205	176	18	1	1	175	1	176	2.57e-101	289
MsaG011640	MtrunA17_Chr3g0077861	62.286	175	58	2	1	175	1	167	9.19e-65	196
MsaG011640	MtrunA17_Chr3g0077911	63.415	164	52	2	1	164	1	156	1.40e-63	192
MsaG011640	MtrunA17_Chr3g0077911	47.368	76	36	1	98	173	8	79	1.77e-12	62.0
MsaG011640	MtrunA17_Chr3g0077811	76.042	96	23	0	1	96	6	101	7.84e-39	129
MsaG011640	MtrunA17_Chr3g0077811	39.286	112	38	1	94	175	9	120	1.49e-14	66.6
MsaG011640	MtrunA17_Chr1g0205821	45.679	162	83	4	6	167	11	167	8.11e-34	117
MsaG011640	MtrunA17_Chr1g0205821	44.000	75	41	1	9	83	100	173	2.29e-11	59.3
MsaG011640	MtrunA17_Chr4g0075861	45.087	173	87	4	2	174	83	247	9.52e-32	117
MsaG011640	MtrunA17_Chr4g0075861	41.566	166	83	4	8	173	12	163	1.47e-27	106
MsaG011640	MtrunA17_Chr4g0075971	45.614	171	85	4	2	172	83	245	2.35e-31	118
MsaG011640	MtrunA17_Chr4g0075971	41.611	149	77	3	25	173	25	163	1.44e-25	102
MsaG011640	MtrunA17_Chr1g0206771	42.767	159	79	2	9	167	17	163	6.90e-31	110
MsaG011640	MtrunA17_Chr1g0206771	49.275	69	34	1	8	76	95	162	2.23e-12	62.4
MsaG011640	MtrunA17_Chr8g0364231	43.750	160	85	3	2	161	36	190	1.73e-28	110
MsaG011640	MtrunA17_Chr8g0364231	51.899	79	37	1	91	169	35	112	4.71e-19	83.6
MsaG011640	MtrunA17_Chr1g0205831	40.541	148	69	3	23	170	16	144	1.54e-25	96.7
MsaG011640	MtrunA17_Chr7g0218891	35.542	166	100	3	8	171	99	259	1.67e-24	96.3
MsaG011640	MtrunA17_Chr7g0218891	36.047	172	103	3	2	171	7	173	2.65e-22	90.5
MsaG011640	MtrunA17_Chr7g0218891	39.286	84	50	1	1	83	178	261	8.27e-14	67.4
MsaG011640	MtrunA17_Chr6g0452021	38.596	171	95	5	2	171	37	198	2.73e-24	98.2
MsaG011640	MtrunA17_Chr5g0415031	39.130	161	93	3	2	162	37	192	1.29e-23	97.1
MsaG011640	MtrunA17_Chr5g0415031	54.054	74	33	1	94	167	39	111	1.24e-17	79.7
MsaG011640	MtrunA17_Chr6g0452001	39.752	161	90	4	2	161	57	211	1.73e-23	96.7
MsaG011640	MtrunA17_Chr6g0452001	48.649	74	37	1	94	167	59	131	1.14e-15	73.9
MsaG011640	MtrunA17_Chr1g0205811	47.664	107	43	2	5	98	9	115	1.40e-22	87.4
MsaG011640	MtrunA17_Chr1g0205811	45.205	73	39	1	98	170	14	85	6.19e-12	59.7
MsaG011640	MtrunA17_Chr1g0205801	50.538	93	41	2	6	98	10	97	2.87e-18	75.9
MsaG011640	MtrunA17_Chr1g0209201	36.806	144	76	3	6	149	14	142	7.68e-18	75.9
MsaG011640	MtrunA17_Chr1g0209201	42.667	75	41	1	98	172	16	88	2.83e-13	63.9
MsaG011640	MtrunA17_Chr1g0206781	39.850	133	49	3	2	134	5	106	5.96e-17	72.8
MsaG011640	MtrunA17_Chr1g0206781	49.351	77	38	1	94	170	7	82	2.95e-16	70.9
MsaG011640	MtrunA17_Chr8g0364021	51.948	77	36	1	2	78	38	113	3.55e-16	73.6
MsaG011640	MtrunA17_Chr8g0364021	46.429	84	42	2	91	174	37	117	8.21e-14	67.0
MsaG011640	MtrunA17_Chr1g0205861	45.238	84	45	1	84	167	2	84	4.38e-14	65.5
MsaG011640	MtrunA17_Chr1g0205861	38.636	88	53	1	1	88	9	95	5.73e-12	59.7
MsaG011640	MtrunA17_Chr2g0328701	38.739	111	55	2	8	118	29	126	1.11e-13	64.3
MsaG011640	MtrunA17_Chr2g0328701	41.667	72	38	1	98	169	29	96	3.60e-11	57.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011640	AT3G01320.2	41.875	160	87	3	2	161	51	204	2.42e-25	102
MsaG011640	AT3G01320.2	50.000	74	36	1	94	167	53	125	4.14e-16	75.5
MsaG011640	AT3G01320.1	41.875	160	87	3	2	161	51	204	2.49e-25	102
MsaG011640	AT3G01320.1	50.000	74	36	1	94	167	53	125	4.19e-16	75.5
MsaG011640	AT1G70030.1	38.889	162	88	4	2	161	5	157	4.60e-24	92.8
MsaG011640	AT5G15020.1	37.209	172	101	3	1	172	45	209	2.32e-23	96.7
MsaG011640	AT5G15020.2	37.209	172	101	3	1	172	45	209	2.45e-23	96.3
MsaG011640	AT1G70060.2	39.375	160	93	3	2	161	8	163	3.27e-23	96.3
MsaG011640	AT1G70060.2	51.351	74	35	1	94	167	10	82	9.35e-16	74.7
MsaG011640	AT1G70060.1	39.375	160	93	3	2	161	8	163	3.27e-23	96.3
MsaG011640	AT1G70060.1	51.351	74	35	1	94	167	10	82	9.35e-16	74.7
MsaG011640	AT1G24190.1	36.875	160	96	3	2	161	8	162	1.29e-22	94.4
MsaG011640	AT1G24190.1	44.706	85	39	2	94	171	10	93	2.42e-15	73.6
MsaG011640	AT1G24190.3	36.875	160	96	3	2	161	8	162	1.31e-22	94.4
MsaG011640	AT1G24190.3	44.706	85	39	2	94	171	10	93	2.42e-15	73.6
MsaG011640	AT1G24190.2	36.875	160	96	3	2	161	8	162	1.32e-22	94.4
MsaG011640	AT1G24190.2	44.706	85	39	2	94	171	10	93	2.40e-15	73.6
MsaG011640	AT1G10450.3	38.961	154	87	3	8	161	84	230	1.26e-21	91.7
MsaG011640	AT1G10450.3	51.389	72	34	1	96	167	82	152	3.47e-15	72.8
MsaG011640	AT1G10450.2	38.961	154	87	3	8	161	33	179	1.59e-21	91.3
MsaG011640	AT1G10450.2	51.389	72	34	1	96	167	31	101	4.23e-15	72.8
MsaG011640	AT1G10450.1	38.961	154	87	3	8	161	33	179	1.59e-21	91.3
MsaG011640	AT1G10450.1	51.389	72	34	1	96	167	31	101	4.23e-15	72.8
MsaG011640	AT1G24230.1	33.333	168	91	3	5	171	11	158	3.13e-21	87.4
MsaG011640	AT1G24230.1	28.667	150	99	2	8	157	86	227	2.66e-13	66.2
MsaG011640	AT1G24250.1	29.936	157	93	2	27	167	33	188	6.13e-20	84.0
MsaG011640	AT1G24200.1	35.220	159	95	3	3	161	9	159	5.12e-19	80.5
MsaG011640	AT1G24200.1	48.052	77	39	1	91	167	7	82	2.46e-14	68.2
MsaG011640	AT1G59890.4	37.013	154	90	3	8	161	45	191	2.25e-18	82.0
MsaG011640	AT1G59890.4	54.286	70	31	1	98	167	45	113	1.39e-16	77.0
MsaG011640	AT1G59890.1	37.013	154	90	3	8	161	45	191	2.32e-18	82.0
MsaG011640	AT1G59890.1	54.286	70	31	1	98	167	45	113	1.39e-16	77.0
MsaG011640	AT1G59890.3	37.013	154	90	3	8	161	45	191	2.60e-18	82.0
MsaG011640	AT1G59890.3	54.286	70	31	1	98	167	45	113	1.46e-16	77.0
MsaG011640	AT1G59890.2	37.013	154	90	3	8	161	45	191	2.60e-18	82.0
MsaG011640	AT1G59890.2	54.286	70	31	1	98	167	45	113	1.56e-16	77.0
MsaG011640	AT5G15025.1	54.054	74	33	1	94	167	43	115	5.64e-18	75.9
MsaG011640	AT5G15025.1	47.059	85	39	2	4	88	43	121	4.39e-13	63.2
MsaG011640	AT1G23810.1	29.167	168	113	2	5	167	11	177	6.68e-17	75.9
MsaG011640	AT1G70030.3	42.241	116	56	4	2	115	16	122	1.95e-16	72.0
MsaG011640	AT1G70030.2	35.802	162	61	5	2	161	16	136	5.42e-16	71.2
MsaG011640	AT1G27260.1	32.051	156	103	3	6	160	1	154	1.97e-15	71.6
MsaG011640	AT4G12020.2	47.222	72	36	1	96	167	306	375	1.30e-13	68.6
MsaG011640	AT4G12020.2	41.667	84	46	2	1	84	301	381	4.98e-13	66.6
MsaG011640	AT1G27220.1	46.377	69	36	1	98	166	14	81	1.35e-13	65.9
MsaG011640	AT1G27220.1	38.384	99	60	1	3	101	9	106	1.07e-11	60.8
MsaG011640	AT4G12020.1	47.222	72	36	1	96	167	306	375	1.36e-13	68.6
MsaG011640	AT4G12020.1	41.667	84	46	2	1	84	301	381	5.20e-13	66.6
MsaG011640	AT4G12020.9	47.222	72	36	1	96	167	306	375	1.36e-13	68.6
MsaG011640	AT4G12020.9	41.667	84	46	2	1	84	301	381	5.20e-13	66.6
MsaG011640	AT4G12020.4	47.222	72	36	1	96	167	306	375	1.37e-13	68.6
MsaG011640	AT4G12020.4	41.667	84	46	2	1	84	301	381	5.22e-13	66.6
MsaG011640	AT4G12020.11	47.222	72	36	1	96	167	306	375	1.40e-13	68.2
MsaG011640	AT4G12020.11	41.667	84	46	2	1	84	301	381	5.46e-13	66.6
MsaG011640	AT4G12020.7	47.222	72	36	1	96	167	306	375	1.44e-13	68.2
MsaG011640	AT4G12020.7	41.667	84	46	2	1	84	301	381	5.61e-13	66.6
MsaG011640	AT4G12020.3	47.222	72	36	1	96	167	306	375	1.45e-13	68.2
MsaG011640	AT4G12020.3	41.667	84	46	2	1	84	301	381	5.63e-13	66.6
MsaG011640	AT4G12020.5	47.222	72	36	1	96	167	239	308	1.54e-13	68.2
MsaG011640	AT4G12020.5	41.667	84	46	2	1	84	234	314	5.78e-13	66.6
MsaG011640	AT4G12020.10	47.222	72	36	1	96	167	306	375	1.58e-13	68.2
MsaG011640	AT4G12020.10	41.667	84	46	2	1	84	301	381	5.68e-13	66.6
MsaG011640	AT4G12020.6	47.222	72	36	1	96	167	306	375	1.62e-13	68.2
MsaG011640	AT4G12020.6	41.667	84	46	2	1	84	301	381	5.89e-13	66.6
MsaG011640	AT4G12020.8	47.222	72	36	1	96	167	306	375	1.62e-13	68.2
MsaG011640	AT4G12020.8	41.667	84	46	2	1	84	301	381	5.89e-13	66.6
MsaG011640	AT1G27250.1	46.154	65	34	1	98	162	21	84	1.71e-11	59.3

Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGGGCATACGGATTTAATTT+TGG	0.153636	3:-8382642	MsaT011640.1:CDS
ATTTCGAAATTAAATCTTCA+TGG	0.307910	3:+8382909	None:intergenic
GGTGTGATTCGATATTTCTT+TGG	0.344227	3:+8382602	None:intergenic
ACAAATTATGAAGGATTTCA+AGG	0.367445	3:-8382987	MsaT011640.1:CDS
GTAGGTTTGGATTTGAGAAA+AGG	0.371809	3:-8383030	MsaT011640.1:CDS
ATTAAGAGTGTACGAGTTGT+TGG	0.382597	3:-8382936	MsaT011640.1:CDS
TAACCGGTGTCAAGCTGAAC+TGG	0.385684	3:+8382578	None:intergenic
AAAGTAAAAGATGTGTTTCA+TGG	0.431621	3:-8382770	MsaT011640.1:CDS
TAGGTTTGGATTTGAGAAAA+GGG	0.438311	3:-8383029	MsaT011640.1:CDS
ATTGTTAAGGATTTCAAGGC+TGG	0.451018	3:-8382713	MsaT011640.1:CDS
GCAGCAGTAAAACGTAGGTT+TGG	0.457719	3:-8383043	MsaT011640.1:CDS
TCGATATTTCTTTGGCAAGA+AGG	0.460534	3:+8382610	None:intergenic
AAATTAAATCCGTATGCCCT+TGG	0.473209	3:+8382645	None:intergenic
ATATGAAATCAAACTTCCAT+TGG	0.495726	3:-8382864	MsaT011640.1:CDS
AATAATGGTAGGCTACTAAC+CGG	0.503832	3:+8382562	None:intergenic
TCATCGTCGTCACGATCCAA+TGG	0.515446	3:+8382848	None:intergenic
GGCTGAAAGAATTGATGCTA+GGG	0.533185	3:-8382966	MsaT011640.1:CDS
TGATCTGGTCCAAGGGCATA+CGG	0.537974	3:-8382654	MsaT011640.1:CDS
AGGCTGAAAGAATTGATGCT+AGG	0.540112	3:-8382967	MsaT011640.1:CDS
AGTTTGATTTCATATTCAGT+TGG	0.545841	3:+8382872	None:intergenic
ATAAGTGTTGCTGCGGCAAG+AGG	0.559399	3:-8382680	MsaT011640.1:CDS
AGAGGGAATGATCTGGTCCA+AGG	0.570236	3:-8382662	MsaT011640.1:CDS
TGTGTTTCATGGTAAGAATG+AGG	0.572647	3:-8382759	MsaT011640.1:CDS
TGCGGCAAGAGGGAATGATC+TGG	0.572764	3:-8382669	MsaT011640.1:CDS
AAGATGAAGAAGCTCTCAGT+TGG	0.573928	3:-8383085	MsaT011640.1:CDS
GACGATGATGACGAACTACA+AGG	0.589561	3:-8382833	MsaT011640.1:CDS
TAAGTGTTGCTGCGGCAAGA+GGG	0.604842	3:-8382679	MsaT011640.1:CDS
GAGGGAATGATCTGGTCCAA+GGG	0.617326	3:-8382661	MsaT011640.1:CDS
AGAGTGTACGAGTTGTTGGA+CGG	0.625456	3:-8382932	MsaT011640.1:CDS
CCTCCAGTTCAGCTTGACAC+CGG	0.627356	3:-8382581	MsaT011640.1:CDS
AATTGATATAAGTGTTGCTG+CGG	0.644511	3:-8382687	MsaT011640.1:CDS
CCGGTGTCAAGCTGAACTGG+AGG	0.668666	3:+8382581	None:intergenic
TACTCGCAGCAGTAAAACGT+AGG	0.698980	3:-8383048	MsaT011640.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	8382577	8383104	8382577	ID=MsaG011640
Chr3	mRNA	8382577	8383104	8382577	ID=MsaT011640.1;Parent=MsaG011640
Chr3	exon	8382577	8383104	8382577	ID=MsaT011640.1.exon1;Parent=MsaT011640.1
Chr3	CDS	8382577	8383104	8382577	ID=cds.MsaT011640.1;Parent=MsaT011640.1

Gene Sequence

>MsaT011640.1

ATGAAGAAGCTCTCAGTTGGTGATGCATTATCGTTACTCGCAGCAGTAAAACGTAGGTTTGGATTTGAGAAAAGGGAAAAATATGGATCTTTTCTACAAATTATGAAGGATTTCAAGGCTGAAAGAATTGATGCTAGGGATGTCAAATTAAGAGTGTACGAGTTGTTGGACGGCCATGAAGATTTAATTTCGAAATTCAACATCTTCTTGCCAACTGAATATGAAATCAAACTTCCATTGGATCGTGACGACGATGATGACGAACTACAAGGTCATATGTTAGAGACAAAAGATGCATTTGCATTTCTCGAGAAAGTAAAAGATGTGTTTCATGGTAAGAATGAGGAAAAGTATAATGAGTTTTTAAAAATTGTTAAGGATTTCAAGGCTGGAAGAATTGATATAAGTGTTGCTGCGGCAAGAGGGAATGATCTGGTCCAAGGGCATACGGATTTAATTTTGGGATTCAACGCCTTCTTGCCAAAGAAATATCGAATCACACCTCCAGTTCAGCTTGACACCGGTTAG

Protein sequence

>MsaT011640.1

MKKLSVGDALSLLAAVKRRFGFEKREKYGSFLQIMKDFKAERIDARDVKLRVYELLDGHEDLISKFNIFLPTEYEIKLPLDRDDDDDELQGHMLETKDAFAFLEKVKDVFHGKNEEKYNEFLKIVKDFKAGRIDISVAAARGNDLVQGHTDLILGFNAFLPKKYRITPPVQLDTG*