AlfalfaGEDB | MsaG011712

M. sativa ssp. caerulea / MsaG011712

KEGG: K13203
GO: -
PFAM: PF12874.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011712	XP_013459055.1	93.915	378	19	1	11	384	16	393	0.0	712

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011712	sp\|Q8AVN9\|ZN346_XENLA	23.574	263	144	7	110	372	219	424	4.44e-11	67.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011712	tr\|A0A072UVJ5\|A0A072UVJ5_MEDTR	93.915	378	19	1	11	384	16	393	0.0	712

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TFs/TRs:

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Gene ID	Type	Classification
MsaG011712	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011712	MtrunA17_Chr3g0086321	93.915	378	19	1	11	384	16	393	0.0	712
MsaG011712	MtrunA17_Chr5g0447971	69.432	229	70	0	156	384	304	532	3.57e-103	315
MsaG011712	MtrunA17_Chr5g0447971	69.655	145	35	1	46	190	53	188	1.48e-55	191
MsaG011712	MtrunA17_Chr5g0447971	31.602	231	114	9	156	378	240	434	5.40e-15	76.6
MsaG011712	MtrunA17_Chr5g0447971	29.457	129	69	3	113	220	397	524	4.99e-11	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011712	AT5G61190.1	30.412	194	104	4	189	382	240	402	9.13e-22	97.8
MsaG011712	AT5G61190.1	25.352	213	115	6	112	284	289	497	1.71e-13	72.8
MsaG011712	AT5G61190.1	25.442	283	155	10	119	374	242	495	2.44e-13	72.4
MsaG011712	AT5G61190.10	30.412	194	104	4	189	382	240	402	1.02e-21	97.8
MsaG011712	AT5G61190.10	24.434	221	115	6	112	284	289	505	1.93e-12	69.3
MsaG011712	AT5G61190.10	25.086	291	154	11	119	374	242	503	3.62e-12	68.6
MsaG011712	AT5G61190.7	30.412	194	104	4	189	382	146	308	1.03e-21	97.8
MsaG011712	AT5G61190.7	24.434	221	115	6	112	284	195	411	2.19e-12	69.3
MsaG011712	AT5G61190.7	25.256	293	151	12	119	374	148	409	4.08e-12	68.6
MsaG011712	AT5G61190.3	30.412	194	104	4	189	382	146	308	1.03e-21	97.8

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Find 86 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGCTAAGAAAATCA+AGG	0.540668	3:+10381974	MsaT011712.1:CDS
AAAATCGATGTCGGCACTAG+TGG	0.557209	3:+10382113	MsaT011712.1:CDS
AAACGTAAAGTTGTGGAAGG+AGG	0.636655	3:+10382242	MsaT011712.1:CDS
AAAGATGTTGAATTTGCAAG+TGG	0.619628	3:-10377933	None:intergenic
AACACCGTTACGCTTGAATT+CGG	0.361255	3:-10381940	None:intergenic
AACCAACAGATTATCAAAAT+TGG	0.227652	3:+10377985	MsaT011712.1:CDS
AAGAAACGTAAAGTTGTGGA+AGG	0.617548	3:+10382239	MsaT011712.1:CDS
AAGAAGGCAGGGTCAGTCAC+TGG	0.535623	3:+10382371	MsaT011712.1:CDS
AAGATGTTGAATTTGCAAGT+GGG	0.649561	3:-10377932	None:intergenic
AAGCTTTGGTGACTTTGGTT+TGG	0.371601	3:-10379735	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	10377822	10382397	10377822	ID=MsaG011712
Chr3	mRNA	10377822	10382397	10377822	ID=MsaT011712.1;Parent=MsaG011712
Chr3	exon	10377822	10378043	10377822	ID=MsaT011712.1.exon1;Parent=MsaT011712.1
Chr3	CDS	10377822	10378043	10377822	ID=cds.MsaT011712.1;Parent=MsaT011712.1
Chr3	exon	10379622	10380056	10379622	ID=MsaT011712.1.exon2;Parent=MsaT011712.1
Chr3	CDS	10379622	10380056	10379622	ID=cds.MsaT011712.1;Parent=MsaT011712.1
Chr3	exon	10381900	10382397	10381900	ID=MsaT011712.1.exon3;Parent=MsaT011712.1
Chr3	CDS	10381900	10382397	10381900	ID=cds.MsaT011712.1;Parent=MsaT011712.1

Gene Sequence

>MsaT011712.1

ATGTACCCTCAACAACAATACCAAGCTCAACCCTACAATTTCCAGCAACAACAACAACAAGCCTATTATTCATCATTCCCTGATCCTTCACTTCATCCTCCTGGCACTGACCCACTTGCAAATTCAACATCTTTTGCACCTCCTGTTTCTCTTTACACCGCCCAACCAACAGATTATCAAAATTGGATCGTTCCACAATCTGAACCTATCAGATATGATCTTGCTGTTGGTTCATCACTCGAGACCTCAGCAGCACCTGCAAGTTTACCTTCTGCGTGGAATGGTACATGGCCACCACAAATTTATGGCAACGAGACTACGACAATGTTGCCTAACCAAACCAAAGTCACCAAAGCTTTGAGATGTGAAGTGTGTAAACTTGATGTCAATAGCAAAGACTCTTATGAAAGTCACATAGCTGGAAAGAAACACAAGAAGAATTTGCAGCTACAGACTAATCCTACTATTACATCTCATGCGAATGTACAAACTGACACAAGTAGTATCCAAGGACAAGCGTTAATTGGTCCCGTAGTCAAGCAATCCGAGCCTAAGAAACAGGTTGATTCTGCAACGGTTTGCTCAACTTGCAATGTTTTGTGCACTAGTCAAGATGCATATATCAAACATCTTGCTGGGAGAAAGCACGCTGCTCAGGTTGCCTTGATGTCTAATAATGGCATTGGTCCATCTATTGCCGAATTCAAGCGTAACGGTGTTGGTCCATTTCAAAAAGCTGCTAAGAAAATCAAGGTTGCTCAATCTGCATGGTGTGAAGTTTGCAAGATTAATTGTAACAGCAGGGATATCTACATTACACACTTAGCTGGTAAGAAACACTTGAAGAACTTGGAGAAACTGTCAAATCCAAAAATCGATGTCGGCACTAGTGGCACTTCCACCGCCACCGCAACAAATACTTTAATCGGGCCACAAGAAAAGCCAGGTACCAATCAACCAAAACCAAAGAAGGCATCAGAACTTGATATTGAGTCAAAGAAACGTAAAGTTGTGGAAGGAGGAGCTGCAGTTGATGGTATTAAAATGTGCACTTTATGCAATGTGGTGTGCAATAGCCAGACAGTTTTCAATTTTCACCTTGTTGGCCAGAAACATGCTGCTATGGTGAAGAAGGCAGGGTCAGTCACTGGTTGA

Protein sequence

>MsaT011712.1

MYPQQQYQAQPYNFQQQQQQAYYSSFPDPSLHPPGTDPLANSTSFAPPVSLYTAQPTDYQNWIVPQSEPIRYDLAVGSSLETSAAPASLPSAWNGTWPPQIYGNETTTMLPNQTKVTKALRCEVCKLDVNSKDSYESHIAGKKHKKNLQLQTNPTITSHANVQTDTSSIQGQALIGPVVKQSEPKKQVDSATVCSTCNVLCTSQDAYIKHLAGRKHAAQVALMSNNGIGPSIAEFKRNGVGPFQKAAKKIKVAQSAWCEVCKINCNSRDIYITHLAGKKHLKNLEKLSNPKIDVGTSGTSTATATNTLIGPQEKPGTNQPKPKKASELDIESKKRKVVEGGAAVDGIKMCTLCNVVCNSQTVFNFHLVGQKHAAMVKKAGSVTG*