AlfalfaGEDB | MsaG011795

M. sativa ssp. caerulea / MsaG011795

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011795	AFK36624.1	93.162	117	4	1	1	113	1	117	8.38e-73	228

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011795	sp\|Q9FZA4\|DOF14_ARATH	81.356	59	10	1	46	103	27	85	2.50e-29	110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011795	tr\|I3S8N2\|I3S8N2_MEDTR	93.162	117	4	1	1	113	1	117	4.00e-73	228

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TFs/TRs:

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Gene ID	Type	Classification
MsaG011795	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011795	MtrunA17_Chr4g0047761	94.737	95	1	1	12	102	34	128	7.82e-58	181
MsaG011795	MtrunA17_Chr2g0282051	82.524	103	14	3	1	101	1	101	1.54e-53	168
MsaG011795	MtrunA17_Chr3g0127201	69.444	72	21	1	29	99	10	81	5.31e-32	114
MsaG011795	MtrunA17_Chr4g0047001	84.211	57	8	1	48	103	57	113	7.88e-31	112
MsaG011795	MtrunA17_Chr8g0374111	68.919	74	21	2	42	113	25	98	1.24e-29	106
MsaG011795	MtrunA17_Chr8g0374251	77.586	58	12	1	44	100	66	123	3.25e-29	107
MsaG011795	MtrunA17_Chr3g0126201	56.566	99	37	3	9	101	9	107	4.21e-29	107
MsaG011795	MtrunA17_Chr2g0328021	70.769	65	18	1	45	108	61	125	7.48e-29	105
MsaG011795	MtrunA17_Chr2g0326001	73.846	65	16	1	36	99	30	94	9.52e-29	105
MsaG011795	MtrunA17_Chr8g0346551	64.789	71	23	2	31	100	10	79	3.01e-28	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011795	AT1G28310.1	81.356	59	10	1	46	103	27	85	2.54e-30	110
MsaG011795	AT1G28310.2	81.356	59	10	1	46	103	51	109	3.87e-30	110
MsaG011795	AT1G51700.1	61.765	68	26	0	42	109	29	96	7.36e-29	103
MsaG011795	AT5G65590.1	51.579	95	35	2	28	111	13	107	8.17e-29	106
MsaG011795	AT3G50410.1	68.657	67	20	1	30	96	15	80	1.76e-28	104
MsaG011795	AT5G60200.1	80.000	55	10	1	46	99	55	109	2.67e-28	103
MsaG011795	AT3G55370.1	75.862	58	13	1	46	102	76	133	2.68e-28	105
MsaG011795	AT3G55370.2	77.193	57	12	1	46	101	76	132	2.86e-28	105
MsaG011795	AT3G55370.3	75.862	58	13	1	46	102	121	178	3.08e-28	105
MsaG011795	AT5G60850.1	64.557	79	24	2	35	109	37	115	4.00e-28	104

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Find 19 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACACTGGACTAAAGG+TGG	0.598362	3:+12380252	MsaT011795.1:CDS
AAGCAGGTTATTTCTAGCAG+TGG	0.536340	3:+12380039	MsaT011795.1:CDS
ACAACAGGGCAAGAAGTAAC+TGG	0.437581	3:-12380339	None:intergenic
ACTCTACGCAATGTTCCTGT+TGG	0.603022	3:+12380276	MsaT011795.1:CDS
AGGGCAAGAAGTAACTGGTG+TGG	0.692908	3:-12380334	None:intergenic
CAAATCTTGAGATTCTAATA+AGG	0.337572	3:-12380079	None:intergenic
CAAGAAGTAACTGGTGTGGT+TGG	0.534676	3:-12380330	None:intergenic
CAAGCTCTACAGAAATGACG+AGG	0.668993	3:-12380228	None:intergenic
CATGGGTTTGAGTTCTAAGC+AGG	0.458863	3:+12380023	None:intergenic
CGCAATGTTCCTGTTGGTGG+TGG	0.518071	3:+12380282	MsaT011795.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	12380024	12380371	12380024	ID=MsaG011795
Chr3	mRNA	12380024	12380371	12380024	ID=MsaT011795.1;Parent=MsaG011795
Chr3	exon	12380024	12380371	12380024	ID=MsaT011795.1.exon1;Parent=MsaT011795.1
Chr3	CDS	12380024	12380371	12380024	ID=cds.MsaT011795.1;Parent=MsaT011795.1

Gene Sequence	>MsaT011795.1 ATGGGTTTGAGTTCTAAGCAGGTTATTTCTAGCAGTGGACTTGATTGGAAACAAACCTTATTAGAATCTCAAGATTTGGAACTTCCAAAGCCTCATCATCTAATGAGAAAACAACAACAGCAACAAGCAGAACATTTGAACTGTCCAAGATGTGATTCAACAAACACAAAGTTTTGTTACTACAATAATTACAACAAGTCTCAACCTCGTCATTTCTGTAGAGCTTGTAAAAGACACTGGACTAAAGGTGGAACTCTACGCAATGTTCCTGTTGGTGGTGGCAGAAAGAATAAGAGGATCAAGAAACCAACCACACCAGTTACTTCTTGCCCTGTTGTAAAGCATTGA
Protein sequence	>MsaT011795.1 MGLSSKQVISSSGLDWKQTLLESQDLELPKPHHLMRKQQQQQAEHLNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRIKKPTTPVTSCPVVKH*