AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG011820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011820 MtrunA17_Chr3g0085241 99.074 216 2 0 1 216 34 249 1.82e-161 445
MsaG011820 MtrunA17_Chr3g0119901 83.019 212 29 1 1 212 2 206 1.68e-131 368
MsaG011820 MtrunA17_Chr8g0355091 51.852 189 81 1 2 180 3 191 2.87e-68 209
MsaG011820 MtrunA17_Chr1g0206991 54.070 172 79 0 2 173 3 174 2.86e-67 204
MsaG011820 MtrunA17_Chr1g0206701 51.852 189 81 1 2 180 3 191 5.14e-67 206
MsaG011820 MtrunA17_Chr1g0206721 51.852 189 81 1 2 180 3 191 1.13e-66 205
MsaG011820 MtrunA17_Chr3g0099421 55.294 170 76 0 2 171 28 197 5.67e-66 204
MsaG011820 MtrunA17_Chr2g0292791 51.323 189 82 1 2 180 3 191 1.95e-65 202
MsaG011820 MtrunA17_Chr1g0208561 54.144 181 81 1 2 180 3 183 1.27e-64 199
MsaG011820 MtrunA17_Chr1g0149391 50.265 189 84 1 2 180 3 191 5.90e-64 198
MsaG011820 MtrunA17_Chr3g0089141 53.039 181 83 1 2 180 3 183 2.46e-63 196
MsaG011820 MtrunA17_Chr2g0325971 53.591 181 82 1 2 180 3 183 4.55e-62 193
MsaG011820 MtrunA17_Chr5g0419601 47.619 189 89 1 2 180 3 191 9.51e-61 190
MsaG011820 MtrunA17_Chr1g0188671 49.735 189 85 1 2 180 41 229 1.01e-58 186
MsaG011820 MtrunA17_Chr1g0208581 50.857 175 84 1 8 180 9 183 2.65e-58 183
MsaG011820 MtrunA17_Chr2g0317451 47.594 187 88 1 4 180 5 191 7.28e-57 180
MsaG011820 MtrunA17_Chr2g0317481 47.594 187 88 1 4 180 5 191 7.36e-57 180
MsaG011820 MtrunA17_Chr1g0187361 49.735 189 85 2 2 180 3 191 8.95e-57 180
MsaG011820 MtrunA17_Chr1g0206691 48.538 171 78 1 20 180 4 174 5.55e-56 177
MsaG011820 MtrunA17_Chr3g0099411 50.270 185 71 3 2 180 3 172 2.87e-55 175
MsaG011820 MtrunA17_Chr5g0422421 44.974 189 94 1 2 180 3 191 3.66e-54 173
MsaG011820 MtrunA17_Chr5g0422941 45.503 189 93 1 2 180 3 191 6.91e-53 170
MsaG011820 MtrunA17_Chr2g0300441 43.956 182 102 0 1 182 2 183 3.30e-52 168
MsaG011820 MtrunA17_Chr2g0300421 57.143 126 54 0 2 127 3 128 4.27e-47 153
MsaG011820 MtrunA17_Chr7g0238991 46.452 155 83 0 23 177 36 190 3.38e-45 150
MsaG011820 MtrunA17_Chr3g0089151 56.198 121 53 0 8 128 9 129 9.78e-44 143
MsaG011820 MtrunA17_Chr2g0333981 39.181 171 100 1 3 173 7 173 3.15e-38 130
MsaG011820 MtrunA17_Chr3g0111931 55.769 104 46 0 20 123 2 105 1.47e-35 121
MsaG011820 MtrunA17_Chr8g0379021 39.506 162 88 2 3 161 7 161 1.09e-33 119
MsaG011820 MtrunA17_Chr4g0018951 40.994 161 83 2 3 163 7 155 1.59e-32 115
MsaG011820 MtrunA17_Chr4g0071601 38.122 181 98 3 3 173 7 183 2.40e-30 110
MsaG011820 MtrunA17_Chr1g0180591 40.523 153 77 3 7 158 1 140 3.63e-28 104
MsaG011820 MtrunA17_Chr4g0074101 38.587 184 83 6 7 170 1 174 5.77e-28 104
MsaG011820 MtrunA17_Chr8g0357771 39.873 158 76 3 7 164 1 139 1.98e-27 102
MsaG011820 MtrunA17_Chr1g0169761 38.158 152 82 2 7 158 1 140 1.46e-26 100
MsaG011820 MtrunA17_Chr1g0187351 64.062 64 23 0 20 83 4 67 2.19e-26 97.1
MsaG011820 MtrunA17_Chr1g0175601 38.065 155 84 2 7 161 1 143 2.27e-26 100
MsaG011820 MtrunA17_Chr1g0175611 43.860 114 62 1 7 120 1 112 4.30e-26 99.0
MsaG011820 MtrunA17_Chr8g0356071 42.537 134 69 3 7 137 1 129 4.51e-26 99.0
MsaG011820 MtrunA17_Chr4g0052061 39.355 155 77 4 7 161 1 138 2.07e-25 97.1
MsaG011820 MtrunA17_Chr8g0376821 43.860 114 62 1 7 120 1 112 1.08e-24 95.9
MsaG011820 MtrunA17_Chr4g0052081 34.810 158 86 3 7 161 1 144 1.50e-22 90.1
MsaG011820 MtrunA17_Chr3g0111841 61.017 59 23 0 14 72 2 60 3.96e-22 85.9
MsaG011820 MtrunA17_Chr3g0111831 54.237 59 27 0 17 75 13 71 8.87e-18 75.1
MsaG011820 MtrunA17_Chr4g0061691 34.337 166 91 7 7 171 1 149 7.81e-17 76.3
MsaG011820 MtrunA17_Chr4g0057151 36.290 124 59 3 9 122 3 116 8.57e-17 75.5
MsaG011820 MtrunA17_Chr1g0204111 43.836 73 41 0 3 75 13 85 2.75e-16 75.1
MsaG011820 MtrunA17_Chr4g0049901 50.000 68 34 0 7 74 27 94 2.94e-16 74.7
MsaG011820 MtrunA17_Chr6g0474371 47.143 70 36 1 7 75 1 70 3.27e-16 73.9
MsaG011820 MtrunA17_Chr2g0279821 41.667 84 45 1 7 90 1 80 3.83e-16 74.3
MsaG011820 MtrunA17_Chr8g0345001 28.750 160 99 3 9 161 19 170 3.86e-16 73.6
MsaG011820 MtrunA17_Chr8g0380021 34.821 112 69 2 3 111 13 123 4.38e-16 74.3
MsaG011820 MtrunA17_Chr3g0077501 44.928 69 38 0 7 75 1 69 5.64e-16 73.9
MsaG011820 MtrunA17_Chr5g0427401 46.377 69 37 0 7 75 1 69 9.22e-16 73.2
MsaG011820 MtrunA17_Chr3g0097101 43.243 74 42 0 2 75 11 84 2.01e-15 72.8
MsaG011820 MtrunA17_Chr4g0049541 31.613 155 88 4 7 161 1 137 2.05e-15 72.4
MsaG011820 MtrunA17_Chr8g0351051 41.176 85 46 2 7 89 1 83 4.09e-15 72.0
MsaG011820 MtrunA17_Chr5g0412461 30.636 173 107 5 7 174 1 165 4.22e-15 71.6
MsaG011820 MtrunA17_Chr3g0134451 46.250 80 41 2 7 85 1 79 5.21e-15 72.4
MsaG011820 MtrunA17_Chr5g0412271 31.788 151 90 4 7 152 1 143 8.46e-15 70.5
MsaG011820 MtrunA17_Chr5g0411691 43.478 69 39 0 7 75 1 69 1.17e-14 70.5
MsaG011820 MtrunA17_Chr4g0020221 43.750 80 45 0 7 86 1 80 1.23e-14 70.5
MsaG011820 MtrunA17_Chr3g0093131 29.530 149 84 4 25 162 36 174 1.86e-14 68.9
MsaG011820 MtrunA17_Chr7g0220121 39.506 81 48 1 7 86 1 81 2.01e-14 70.1
MsaG011820 MtrunA17_Chr2g0284911 35.185 108 66 2 7 111 16 122 2.78e-14 69.7
MsaG011820 MtrunA17_Chr8g0366231 44.286 70 38 1 7 75 1 70 1.14e-13 67.8
MsaG011820 MtrunA17_Chr8g0351041 43.284 67 38 0 9 75 3 69 1.37e-13 66.2
MsaG011820 MtrunA17_Chr1g0173161 46.774 62 33 0 7 68 1 62 1.54e-13 63.9
MsaG011820 MtrunA17_Chr7g0246431 33.962 106 65 2 9 114 3 103 2.00e-13 66.6
MsaG011820 MtrunA17_Chr4g0025531 48.148 81 42 0 3 83 4 84 2.15e-13 67.0
MsaG011820 MtrunA17_Chr6g0455511 42.857 70 39 1 7 75 1 70 4.98e-13 66.2
MsaG011820 MtrunA17_Chr8g0351031 43.284 67 38 0 9 75 3 69 6.50e-13 65.5
MsaG011820 MtrunA17_Chr5g0420081 41.429 70 40 1 7 75 1 70 7.04e-13 65.5
MsaG011820 MtrunA17_Chr5g0427921 48.276 58 30 0 7 64 1 58 1.04e-12 60.8
MsaG011820 MtrunA17_Chr2g0308251 43.056 72 40 1 7 77 1 72 1.49e-12 61.2
MsaG011820 MtrunA17_Chr1g0164791 43.662 71 38 1 7 75 1 71 1.67e-12 64.3
MsaG011820 MtrunA17_Chr5g0425191 50.943 53 26 0 7 59 1 53 2.83e-12 61.2
MsaG011820 MtrunA17_Chr4g0044071 46.552 58 31 0 7 64 1 58 3.00e-12 61.2
MsaG011820 MtrunA17_Chr7g0246381 44.776 67 32 1 7 68 1 67 3.05e-12 60.1
MsaG011820 MtrunA17_Chr7g0220111 41.429 70 40 1 7 75 1 70 3.07e-12 63.9
MsaG011820 MtrunA17_Chr5g0420091 40.000 70 41 1 7 75 1 70 5.15e-12 62.8
MsaG011820 MtrunA17_Chr8g0377561 45.614 57 31 0 7 63 1 57 5.69e-12 60.1
MsaG011820 MtrunA17_Chr4g0061671 27.219 169 103 4 7 174 1 150 6.95e-12 62.0
MsaG011820 MtrunA17_Chr3g0125241 38.028 71 42 1 7 75 26 96 7.60e-12 62.0
MsaG011820 MtrunA17_Chr3g0142191 40.845 71 40 1 7 75 1 71 1.12e-11 62.0
MsaG011820 MtrunA17_Chr3g0122251 47.368 57 30 0 7 63 1 57 1.62e-11 62.0
MsaG011820 MtrunA17_Chr1g0159661 38.028 71 42 1 7 75 1 71 1.62e-11 60.8
MsaG011820 MtrunA17_Chr5g0404951 40.845 71 40 1 7 75 1 71 1.68e-11 61.6
MsaG011820 MtrunA17_Chr4g0018421 38.272 81 47 2 7 84 1 81 2.30e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG011820 AT5G60440.1 51.913 183 83 3 4 183 3 183 4.52e-56 180
MsaG011820 AT2G24840.1 47.783 203 86 5 6 205 61 246 1.16e-54 176
MsaG011820 AT4G36590.1 41.053 190 95 5 4 185 3 183 2.16e-37 130
MsaG011820 AT1G01530.1 37.674 215 120 5 1 204 1 212 6.10e-36 127
MsaG011820 AT1G65360.1 39.303 201 94 6 1 186 1 188 9.18e-32 115
MsaG011820 AT2G34440.1 37.278 169 99 4 7 170 1 167 2.14e-27 102
MsaG011820 AT3G66656.1 40.909 132 73 2 7 133 1 132 8.06e-24 94.0
MsaG011820 AT3G04100.1 30.380 158 106 2 8 161 14 171 2.12e-22 90.9
MsaG011820 AT1G28460.1 31.884 138 92 1 1 136 1 138 8.89e-22 88.6
MsaG011820 AT1G72350.1 34.416 154 68 4 8 161 43 163 4.57e-21 87.8
MsaG011820 AT1G17310.1 35.256 156 65 4 8 163 48 167 1.66e-17 78.2
MsaG011820 AT1G17310.2 35.256 156 65 4 8 163 59 178 1.67e-17 78.2
MsaG011820 AT4G24540.1 32.530 166 95 4 7 172 1 149 2.65e-17 77.8
MsaG011820 AT2G22630.1 47.887 71 37 0 7 77 1 71 6.79e-17 76.6
MsaG011820 AT2G22630.2 47.887 71 37 0 7 77 1 71 6.79e-17 76.6
MsaG011820 AT4G37940.4 46.377 69 37 0 7 75 1 69 7.48e-17 76.3
MsaG011820 AT4G37940.1 46.377 69 37 0 7 75 1 69 8.57e-17 76.6
MsaG011820 AT4G37940.3 46.377 69 37 0 7 75 1 69 8.77e-17 75.1
MsaG011820 AT2G45650.1 42.353 85 42 1 7 84 1 85 9.21e-17 76.6
MsaG011820 AT1G29962.1 30.137 146 96 2 1 140 1 146 9.51e-17 75.5
MsaG011820 AT3G57230.2 43.478 69 39 0 7 75 1 69 1.07e-16 74.3
MsaG011820 AT5G60910.1 33.136 169 97 5 7 175 1 153 2.18e-16 75.5
MsaG011820 AT4G22950.2 39.167 120 62 4 9 123 3 116 2.38e-16 73.9
MsaG011820 AT1G28450.1 30.137 146 96 2 1 140 1 146 2.63e-16 74.3
MsaG011820 AT3G57230.1 43.478 69 39 0 7 75 1 69 4.80e-16 74.7
MsaG011820 AT3G57230.4 43.478 69 39 0 7 75 1 69 4.80e-16 74.7
MsaG011820 AT5G13790.2 41.071 112 63 2 7 117 1 110 6.30e-16 74.7
MsaG011820 AT1G47760.1 33.775 151 74 4 7 155 1 127 6.36e-16 73.2
MsaG011820 AT4G22950.3 39.167 120 62 4 9 123 3 116 6.86e-16 73.9
MsaG011820 AT4G22950.1 39.167 120 62 4 9 123 3 116 6.86e-16 73.9
MsaG011820 AT5G51870.5 47.945 73 38 0 3 75 20 92 7.53e-16 73.2
MsaG011820 AT2G22540.3 29.714 175 105 3 7 180 1 158 1.14e-15 73.6
MsaG011820 AT2G22540.1 29.714 175 105 3 7 180 1 158 1.14e-15 73.6
MsaG011820 AT5G51870.2 50.746 67 33 0 9 75 3 69 1.28e-15 72.0
MsaG011820 AT5G51870.1 50.746 67 33 0 9 75 3 69 1.61e-15 72.8
MsaG011820 AT5G51870.3 48.571 70 36 0 6 75 10 79 1.77e-15 72.8
MsaG011820 AT3G57390.3 37.302 126 72 3 7 125 1 126 2.14e-15 72.8
MsaG011820 AT1G77950.3 43.590 78 42 2 7 83 1 77 2.30e-15 73.2
MsaG011820 AT1G77950.2 43.590 78 42 2 7 83 1 77 2.30e-15 73.2
MsaG011820 AT1G77950.1 43.590 78 42 2 7 83 1 77 2.30e-15 73.2
MsaG011820 AT1G77950.4 43.590 78 42 2 7 83 1 77 2.30e-15 73.2
MsaG011820 AT5G13790.1 39.655 116 56 3 7 117 1 107 2.34e-15 73.2
MsaG011820 AT3G57390.1 37.302 126 72 3 7 125 1 126 2.76e-15 72.8
MsaG011820 AT4G09960.2 43.478 69 39 0 7 75 1 69 2.91e-15 72.0
MsaG011820 AT5G51870.4 50.746 67 33 0 9 75 3 69 3.46e-15 72.0
MsaG011820 AT4G09960.6 43.478 69 39 0 7 75 2 70 3.57e-15 72.0
MsaG011820 AT4G09960.1 43.478 69 39 0 7 75 1 69 3.74e-15 72.0
MsaG011820 AT4G09960.5 43.478 69 39 0 7 75 11 79 4.36e-15 72.0
MsaG011820 AT1G77980.1 46.479 71 37 1 7 76 1 71 6.84e-15 72.8
MsaG011820 AT4G09960.3 41.667 72 42 0 4 75 24 95 7.43e-15 71.6
MsaG011820 AT2G45660.2 44.118 68 38 0 9 76 3 70 8.85e-15 69.7
MsaG011820 AT3G30260.1 47.143 70 36 1 7 75 1 70 8.93e-15 71.2
MsaG011820 AT2G45660.1 44.118 68 38 0 9 76 3 70 1.62e-14 70.1
MsaG011820 AT3G58780.1 40.698 86 46 1 7 87 16 101 1.63e-14 70.5
MsaG011820 AT3G58780.5 40.698 86 46 1 7 87 22 107 1.64e-14 70.9
MsaG011820 AT4G09960.4 43.478 69 39 0 7 75 96 164 1.79e-14 71.2
MsaG011820 AT2G42830.1 43.478 69 39 0 7 75 16 84 1.96e-14 70.5
MsaG011820 AT2G42830.2 43.478 69 39 0 7 75 16 84 2.04e-14 70.5
MsaG011820 AT2G14210.1 44.286 70 38 1 7 75 1 70 2.61e-14 69.7
MsaG011820 AT5G10140.2 36.000 125 62 5 7 113 1 125 2.79e-14 68.6
MsaG011820 AT5G62165.14 36.709 79 50 0 9 87 3 81 2.82e-14 67.0
MsaG011820 AT1G71692.1 45.070 71 38 1 7 76 1 71 2.85e-14 69.3
MsaG011820 AT2G14210.2 44.286 70 38 1 7 75 1 70 3.02e-14 69.7
MsaG011820 AT1G22130.1 45.070 71 38 1 7 76 1 71 3.63e-14 70.5
MsaG011820 AT3G54340.1 31.915 141 81 4 7 133 1 140 4.01e-14 69.3
MsaG011820 AT3G58780.4 40.698 86 46 1 7 87 16 101 4.20e-14 69.7
MsaG011820 AT1G26310.1 29.412 170 102 5 7 174 1 154 4.30e-14 69.7
MsaG011820 AT3G61120.1 43.478 69 39 0 7 75 1 69 4.84e-14 69.3
MsaG011820 AT5G10140.3 36.000 125 62 5 7 113 1 125 5.63e-14 68.2
MsaG011820 AT4G18960.1 44.118 68 38 0 8 75 18 85 6.02e-14 68.9
MsaG011820 AT5G10140.4 36.000 125 62 5 7 113 1 125 7.73e-14 67.4
MsaG011820 AT5G62165.17 36.709 79 50 0 9 87 3 81 7.96e-14 67.0
MsaG011820 AT5G62165.12 36.709 79 50 0 9 87 3 81 7.96e-14 67.0
MsaG011820 AT5G62165.11 36.709 79 50 0 9 87 3 81 7.96e-14 67.0
MsaG011820 AT5G10140.1 45.714 70 37 1 7 75 1 70 8.65e-14 67.8
MsaG011820 AT1G46408.1 49.351 77 35 2 9 81 5 81 8.94e-14 68.9
MsaG011820 AT5G62165.6 36.709 79 50 0 9 87 3 81 1.01e-13 66.6
MsaG011820 AT5G62165.9 36.709 79 50 0 9 87 3 81 1.01e-13 66.6
MsaG011820 AT5G62165.7 36.709 79 50 0 9 87 3 81 1.01e-13 66.6
MsaG011820 AT5G62165.8 36.709 79 50 0 9 87 3 81 1.01e-13 66.6
MsaG011820 AT5G62165.13 36.709 79 50 0 9 87 3 81 1.01e-13 66.6
MsaG011820 AT2G22540.2 31.429 175 97 5 7 180 1 153 1.09e-13 68.2
MsaG011820 AT1G69120.2 45.714 70 37 1 7 75 1 70 1.11e-13 68.2
MsaG011820 AT5G23260.4 45.570 79 41 1 3 79 13 91 1.11e-13 68.6
MsaG011820 AT5G23260.1 45.570 79 41 1 3 79 13 91 1.18e-13 68.6
MsaG011820 AT5G51860.2 46.269 67 36 0 9 75 3 69 1.56e-13 67.0
MsaG011820 AT5G62165.10 36.709 79 50 0 9 87 3 81 1.63e-13 67.0
MsaG011820 AT5G62165.4 36.709 79 50 0 9 87 3 81 1.63e-13 67.0
MsaG011820 AT5G62165.3 36.709 79 50 0 9 87 3 81 1.84e-13 67.0
MsaG011820 AT5G62165.1 36.709 79 50 0 9 87 3 81 1.84e-13 67.0
MsaG011820 AT5G62165.2 36.709 79 50 0 9 87 3 81 1.84e-13 67.0
MsaG011820 AT1G69120.1 45.714 70 37 1 7 75 1 70 2.16e-13 67.8
MsaG011820 AT4G11880.2 36.842 114 62 4 9 118 3 110 2.17e-13 66.2
MsaG011820 AT4G11880.3 36.842 114 62 4 9 118 3 110 2.17e-13 66.2
MsaG011820 AT5G51860.1 46.269 67 36 0 9 75 3 69 2.31e-13 67.0
MsaG011820 AT2G03710.3 30.357 168 97 7 7 172 1 150 4.00e-13 65.9
MsaG011820 AT5G65050.2 42.222 90 50 2 7 95 1 89 4.37e-13 65.5
MsaG011820 AT5G49490.1 43.836 73 37 1 9 77 46 118 4.40e-13 67.0
MsaG011820 AT2G03710.1 30.357 168 97 7 7 172 1 150 5.45e-13 66.6
MsaG011820 AT4G11880.4 36.842 114 62 4 9 118 3 110 5.82e-13 65.9
MsaG011820 AT4G11880.1 36.842 114 62 4 9 118 3 110 5.82e-13 65.9
MsaG011820 AT2G03710.2 30.357 168 97 7 7 172 1 150 6.20e-13 66.2
MsaG011820 AT5G65050.3 42.222 90 50 2 7 95 1 89 7.28e-13 65.1
MsaG011820 AT5G65050.5 42.222 90 50 2 7 95 1 89 7.82e-13 64.7
MsaG011820 AT5G65050.1 42.222 90 50 2 7 95 1 89 7.98e-13 64.7
MsaG011820 AT5G23260.2 45.333 75 39 1 7 79 1 75 1.12e-12 65.5
MsaG011820 AT5G38620.1 31.875 160 76 5 9 161 6 139 1.23e-12 66.2
MsaG011820 AT5G49420.1 41.558 77 41 1 9 81 8 84 1.28e-12 66.2
MsaG011820 AT5G23260.3 45.333 75 39 1 7 79 1 75 1.37e-12 65.1
MsaG011820 AT4G37435.1 38.298 94 53 2 7 95 1 94 2.25e-12 63.5
MsaG011820 AT5G65060.3 42.222 90 50 2 7 95 1 89 2.32e-12 63.5
MsaG011820 AT5G04640.1 41.772 79 42 1 9 83 5 83 2.75e-12 65.1
MsaG011820 AT5G65060.2 42.222 90 50 2 7 95 1 89 2.85e-12 63.5
MsaG011820 AT5G65060.1 42.222 90 50 2 7 95 1 89 2.86e-12 63.5
MsaG011820 AT3G58780.2 39.506 81 47 1 7 87 16 94 3.85e-12 63.9
MsaG011820 AT3G58780.3 47.458 59 31 0 7 65 16 74 6.01e-12 63.9
MsaG011820 AT5G15800.1 41.429 70 40 1 7 75 1 70 6.62e-12 63.5
MsaG011820 AT5G15800.2 41.429 70 40 1 7 75 1 70 1.07e-11 62.8
MsaG011820 AT5G65070.4 40.000 70 41 1 7 75 1 70 1.08e-11 60.8
MsaG011820 AT1G24260.3 29.609 179 112 6 7 185 1 165 1.14e-11 62.4
MsaG011820 AT1G18750.3 33.750 80 51 1 7 84 1 80 1.32e-11 63.5
MsaG011820 AT1G18750.4 35.526 76 47 1 7 80 1 76 1.41e-11 63.2
MsaG011820 AT1G18750.1 35.526 76 47 1 7 80 1 76 1.78e-11 63.2
MsaG011820 AT5G20240.1 27.313 227 107 10 7 205 1 197 1.95e-11 61.6
MsaG011820 AT3G02310.2 45.614 57 31 0 7 63 1 57 2.13e-11 61.2
MsaG011820 AT5G65070.1 40.000 70 41 1 7 75 1 70 2.43e-11 61.2
MsaG011820 AT5G20240.2 38.028 71 42 1 7 75 1 71 2.45e-11 60.1
MsaG011820 AT1G24260.1 45.614 57 31 0 7 63 1 57 3.44e-11 61.2
MsaG011820 AT1G24260.2 45.614 57 31 0 7 63 1 57 3.61e-11 61.2
MsaG011820 AT3G02310.1 45.614 57 31 0 7 63 1 57 4.89e-11 60.8
MsaG011820 AT5G65070.2 40.000 70 41 1 7 75 1 70 5.39e-11 60.5
MsaG011820 AT5G27130.1 42.857 77 40 2 9 81 14 90 7.19e-11 60.8
MsaG011820 AT5G65070.5 40.000 70 41 1 7 75 1 70 9.04e-11 59.7

Find 47 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCCTTGACAACAAATT+TGG 0.113523 3:+13189516 MsaT011820.1:CDS
GAATGAATTGGTCCAATTAA+AGG 0.214926 3:+13189383 MsaT011820.1:CDS
CCTCAATAGAACCCTTTAAT+TGG 0.231431 3:-13189395 None:intergenic
AAGCTAGGCAAAGGCAATTT+TGG 0.238341 3:+13189331 MsaT011820.1:CDS
TCGACAATCGACTCAACTTC+TGG 0.248625 3:-13189147 None:intergenic
GCCGATAAGGCATTCTCTTT+TGG 0.276540 3:+13189120 MsaT011820.1:CDS
TAATGCGTCTTCATCAAATA+TGG 0.281918 3:+13189470 MsaT011820.1:CDS
CTTCCTAATGCCTATTATCT+TGG 0.300883 3:+13189558 MsaT011820.1:CDS
ATTCCGAAAACCAAGATAAT+AGG 0.322370 3:-13189568 None:intergenic
AATGAATTGGTCCAATTAAA+GGG 0.343261 3:+13189384 MsaT011820.1:CDS
CGCAATCCTCCACAAGAATC+TGG 0.345202 3:+13189183 MsaT011820.1:CDS
TTAATTGGACCAATTCATTC+AGG 0.349860 3:-13189380 None:intergenic
GACTCAACTTCTTAACCATT+TGG 0.367151 3:+13189266 MsaT011820.1:CDS
ATTCCCTTGACAACAAATTT+GGG 0.376420 3:+13189517 MsaT011820.1:CDS
ACCAAAAGAGAATGCCTTAT+CGG 0.378813 3:-13189121 None:intergenic
GGTTAAGAAGTTGAGTCAAT+TGG 0.389101 3:-13189260 None:intergenic
ATGTCAAAGAAGACTAGTTT+AGG 0.390216 3:+13188952 MsaT011820.1:CDS
AAACCAAGATAATAGGCATT+AGG 0.392169 3:-13189561 None:intergenic
TTCAGGCCAAGCTCATCAAT+AGG 0.410620 3:-13189363 None:intergenic
ACTTTCTCTAAACGTCGTTC+AGG 0.410825 3:+13189027 MsaT011820.1:CDS
AATCCCAAATTTGTTGTCAA+GGG 0.464932 3:-13189520 None:intergenic
TCAGGCCAAGCTCATCAATA+GGG 0.468826 3:-13189362 None:intergenic
TGAGCTTGGCCTGAATGAAT+TGG 0.470444 3:+13189371 MsaT011820.1:CDS
TAATCCCAAATTTGTTGTCA+AGG 0.470975 3:-13189521 None:intergenic
CCAATTAAAGGGTTCTATTG+AGG 0.473584 3:+13189395 MsaT011820.1:CDS
AGATAATAGGCATTAGGAAG+TGG 0.492343 3:-13189555 None:intergenic
AATGCGTCTTCATCAAATAT+GGG 0.517540 3:+13189471 MsaT011820.1:CDS
AAAGAGAATGCCTTATCGGC+AGG 0.518945 3:-13189117 None:intergenic
TTCTATGAGCCTCGACAAGT+TGG 0.535808 3:-13189212 None:intergenic
TTGAGCACATGAGGAAAGCT+AGG 0.536835 3:+13189316 MsaT011820.1:CDS
ATTTGCTAACAAATGCATGA+TGG 0.552348 3:+13189440 MsaT011820.1:CDS
GATAATAGGCATTAGGAAGT+GGG 0.561482 3:-13189554 None:intergenic
TGGTGAGCACCAGATTCTTG+TGG 0.570103 3:-13189192 None:intergenic
GAGAGCCCTATTGATGAGCT+TGG 0.573894 3:+13189357 MsaT011820.1:CDS
TCATCAAATATGGGAGCAAG+TGG 0.574601 3:+13189480 MsaT011820.1:CDS
ATAATAGGCATTAGGAAGTG+GGG 0.586123 3:-13189553 None:intergenic
GGGAAGAGATTGAGCACATG+AGG 0.589711 3:+13189307 MsaT011820.1:CDS
GAGGAGCTGAAGAAGAACAT+TGG 0.590030 3:+13189414 MsaT011820.1:CDS
TGAGCACCAGATTCTTGTGG+AGG 0.592210 3:-13189189 None:intergenic
TTGGAGATTGAAAAGAAACA+AGG 0.597369 3:+13189285 MsaT011820.1:CDS
TGGAGATTGAAAAGAAACAA+GGG 0.599308 3:+13189286 MsaT011820.1:CDS
ACATGAGGAAAGCTAGGCAA+AGG 0.608478 3:+13189322 MsaT011820.1:CDS
TGGTGCTCACCAACTTGTCG+AGG 0.609761 3:+13189203 MsaT011820.1:CDS
GGAGATTGAAAAGAAACAAG+GGG 0.615656 3:+13189287 MsaT011820.1:CDS
TAAACTAGTCTTCTTTGACA+TGG 0.648494 3:-13188950 None:intergenic
TAATAGGCATTAGGAAGTGG+GGG 0.649700 3:-13189552 None:intergenic
AGTGAACTTTGCACTCTGTG+TGG 0.662014 3:+13189066 MsaT011820.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 13188952 13189602 13188952 ID=MsaG011820
Chr3 mRNA 13188952 13189602 13188952 ID=MsaT011820.1;Parent=MsaG011820
Chr3 exon 13188952 13189602 13188952 ID=MsaT011820.1.exon1;Parent=MsaT011820.1
Chr3 CDS 13188952 13189602 13188952 ID=cds.MsaT011820.1;Parent=MsaT011820.1
Gene Sequence

>MsaT011820.1

ATGTCAAAGAAGACTAGTTTAGGTAGACAAAAAATCCCTATTGAAAAAATACCCAAAAAGAGTCATTTACAAGTTACTTTCTCTAAACGTCGTTCAGGACTATTCAAAAAAGCTAGTGAACTTTGCACTCTGTGTGGTGTTGAGATTGCAATCGTTGTTTTCTCTCCTGCCGATAAGGCATTCTCTTTTGGTCATCCAGAAGTTGAGTCGATTGTCGATCGTTATTTGACTCGCAATCCTCCACAAGAATCTGGTGCTCACCAACTTGTCGAGGCTCATAGAAATGCTAATGTGCGCGATCTCAACATCCAATTGACTCAACTTCTTAACCATTTGGAGATTGAAAAGAAACAAGGGGAAGAGATTGAGCACATGAGGAAAGCTAGGCAAAGGCAATTTTGGTGGGAGAGCCCTATTGATGAGCTTGGCCTGAATGAATTGGTCCAATTAAAGGGTTCTATTGAGGAGCTGAAGAAGAACATTGGAAAATTTGCTAACAAATGCATGATGGAACAGTCTAATGCGTCTTCATCAAATATGGGAGCAAGTGGATTTGTACGTTATGATTCCCTTGACAACAAATTTGGGATTAATATTGCTCCCCCACTTCCTAATGCCTATTATCTTGGTTTTCGGAATGGGTATCTTTGA
Protein sequence

>MsaT011820.1

MSKKTSLGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIVVFSPADKAFSFGHPEVESIVDRYLTRNPPQESGAHQLVEAHRNANVRDLNIQLTQLLNHLEIEKKQGEEIEHMRKARQRQFWWESPIDELGLNELVQLKGSIEELKKNIGKFANKCMMEQSNASSSNMGASGFVRYDSLDNKFGINIAPPLPNAYYLGFRNGYL*