AlfalfaGEDB | MsaG011930

M. sativa ssp. caerulea / MsaG011930

KEGG: K12606 K13754
GO: GO:0000003 GO:0000075 GO:0000077 GO:0000278 GO:0000288 GO:0000289 GO:0000932 GO:0000956 GO:0001932 GO:0001934 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005102 GO:0005154 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006401 GO:0006402 GO:0006417 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006977 GO:0007044 GO:0007049 GO:0007093 GO:0007154 GO:0007165 GO:0007166 GO:0007276 GO:0007283 GO:0007346 GO:0007548 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010562 GO:0010564 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010646 GO:0010647 GO:0010648 GO:0010948 GO:0016043 GO:0016070 GO:0016071 GO:0017148 GO:0019219 GO:0019220 GO:0019221 GO:0019222 GO:0019439 GO:0019899 GO:0019900 GO:0019904 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0023056 GO:0023057 GO:0030014 GO:0030015 GO:0030330 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031401 GO:0031570 GO:0031571 GO:0031581 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0033135 GO:0033138 GO:0033143 GO:0033144 GO:0033146 GO:0033147 GO:0033554 GO:0034097 GO:0034243 GO:0034248 GO:0034249 GO:0034329 GO:0034330 GO:0034641 GO:0034655 GO:0035556 GO:0035770 GO:0036464 GO:0042058 GO:0042221 GO:0042325 GO:0042327 GO:0042770 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044773 GO:0044774 GO:0044783 GO:0044819 GO:0045742 GO:0045786 GO:0045787 GO:0045893 GO:0045930 GO:0045935 GO:0045937 GO:0045944 GO:0046483 GO:0046700 GO:0046983 GO:0048232 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048609 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051254 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070851 GO:0070887 GO:0071156 GO:0071158 GO:0071310 GO:0071345 GO:0071704 GO:0071840 GO:0072331 GO:0072395 GO:0072401 GO:0072413 GO:0072422 GO:0072431 GO:0080090 GO:0090068 GO:0090304 GO:0097159 GO:1901184 GO:1901186 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902400 GO:1902402 GO:1902403 GO:1902680 GO:1902806 GO:1902807 GO:1903047 GO:1903506 GO:1903508 GO:1990904 GO:2000045 GO:2000112 GO:2000113 GO:2000134 GO:2000325 GO:2000327 GO:2001141
PFAM: PF04078.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011930	XP_003598636.1	95.349	301	14	0	1	301	1	301	0.0	585

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011930	sp\|Q6P819\|CNOT9_XENTR	53.257	261	122	0	43	303	28	288	3.14e-91	277

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011930	tr\|Q2HW81\|Q2HW81_MEDTR	95.349	301	14	0	1	301	1	301	0.0	585

TFs/TRs:

Gene ID	Type	Classification
MsaG011930	TR	Rcd1-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG011847	MsaG011930	0.809613	2.963652e-50	5.013986e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011930	MtrunA17_Chr7g0224601	62.706	303	109	2	12	310	2	304	1.93e-121	351
MsaG011930	MtrunA17_Chr8g0392781	53.371	356	131	2	1	321	1	356	1.15e-118	346
MsaG011930	MtrunA17_Chr1g0177151	61.479	257	95	1	1	257	1	253	5.42e-113	328
MsaG011930	MtrunA17_Chr3g0099561	59.857	279	112	0	38	316	26	304	2.19e-111	325
MsaG011930	MtrunA17_Chr5g0444621	63.333	210	77	0	70	279	52	261	5.73e-88	265
MsaG011930	MtrunA17_Chr6g0477171	65.306	196	68	0	62	257	48	243	7.93e-85	256
MsaG011930	MtrunA17_Chr3g0083811	98.276	116	2	0	186	301	1	116	5.24e-78	233
MsaG011930	MtrunA17_Chr3g0083821	72.973	111	30	0	54	164	10	120	3.98e-51	165
MsaG011930	MtrunA17_Chr5g0444631	67.925	53	17	0	112	164	4	56	2.50e-19	80.5
MsaG011930	MtrunA17_Chr6g0477181	61.017	59	23	0	1	59	1	59	6.07e-15	69.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011930	AT3G20800.1	55.814	301	127	2	21	316	17	316	5.24e-110	323
MsaG011930	AT5G12980.1	53.455	275	127	1	31	304	28	302	7.87e-99	294
MsaG011930	AT2G32550.2	35.510	245	142	5	53	285	67	307	4.75e-35	130
MsaG011930	AT2G32550.3	35.897	234	134	5	64	285	39	268	8.44e-35	128
MsaG011930	AT2G32550.1	35.648	216	123	5	82	285	2	213	5.73e-30	114

Find 56 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTCGCTTATCTCAAAATTAC+AGG	0.218940	3:+15240180	MsaT011930.1:CDS
AGGAACTTGGACCTTTATTA+TGG	0.221177	3:+15237253	MsaT011930.1:CDS
AGAAATGAGATCCTTGTATC+AGG	0.301701	3:-15238263	None:intergenic
ATAGAAACCTATGACTTCTT+TGG	0.317203	3:-15239817	None:intergenic
AGGAATGGATATAAATATAA+AGG	0.360461	3:-15238653	None:intergenic
CAATGTTCTTGCACTACTTC+AGG	0.367374	3:+15238033	MsaT011930.1:CDS
GTTGCTAGTCTTGGAGTCAT+TGG	0.372727	3:+15238716	MsaT011930.1:CDS
TATATTAGACGATGATGGTT+TGG	0.376298	3:+15240037	MsaT011930.1:CDS
TTGGCATCTTTGAGCCTGTT+TGG	0.379455	3:-15240322	None:intergenic
CCAACAGTATTCCATAATAA+AGG	0.383147	3:-15237264	None:intergenic
TATGATCAGTGGTGTTAGAT+TGG	0.407147	3:-15236105	None:intergenic
GTTAACACCAAAGAAGTCAT+AGG	0.420089	3:+15239810	MsaT011930.1:CDS
TGTTGTTACATGAGAATGTT+GGG	0.422120	3:+15240810	MsaT011930.1:CDS
TCAGAGCACCAAGTTATTTG+AGG	0.428345	3:+15237233	MsaT011930.1:intron
TAACAACTTATCTTCCAAAC+AGG	0.438040	3:+15240308	MsaT011930.1:CDS
TTCTTTGTTGAGAGCGATTG+AGG	0.439462	3:-15236046	None:intergenic
GATTGTGAGGGAGAGAGATT+CGG	0.440290	3:-15237998	None:intergenic
TAACACAGTTTGAGAATTTG+AGG	0.440707	3:+15238693	MsaT011930.1:CDS
AATCTAACACCACTGATCAT+AGG	0.444777	3:+15236107	MsaT011930.1:CDS
AATTTGAGGGTTGCTAGTCT+TGG	0.451958	3:+15238707	MsaT011930.1:CDS
GGAGGAATTGATGATATTGT+AGG	0.453082	3:+15240863	MsaT011930.1:CDS
AAAATTATATTAGACGATGA+TGG	0.467412	3:+15240032	MsaT011930.1:CDS
CACCCTCACCTCGTTTGTTG+AGG	0.472935	3:+15240138	MsaT011930.1:CDS
TGTTATTGAACTCAGCAATC+CGG	0.481393	3:+15236150	MsaT011930.1:CDS
ATGATCAGTGGTGTTAGATT+GGG	0.483339	3:-15236104	None:intergenic
ACCAAGTTATTTGAGGAACT+TGG	0.485648	3:+15237240	MsaT011930.1:CDS
AGATTCGGTGGTGAAAGAGT+AGG	0.488495	3:-15237983	None:intergenic
AACCGAGTTCCTTTAGAAGC+AGG	0.491153	3:+15240836	MsaT011930.1:CDS
GCTAGTCTTGGAGTCATTGG+TGG	0.491588	3:+15238719	MsaT011930.1:CDS
CCTTTATTATGGAATACTGT+TGG	0.492405	3:+15237264	MsaT011930.1:CDS
CCTCCTCTACCTGCTTCTAA+AGG	0.503277	3:-15240845	None:intergenic
GTTCCTTTAGAAGCAGGTAG+AGG	0.520910	3:+15240842	MsaT011930.1:CDS
TCCAAGTTCCTCAAATAACT+TGG	0.522228	3:-15237241	None:intergenic
TGGCATCTCACCCTGATACA+AGG	0.537570	3:+15238252	MsaT011930.1:CDS
AACACAGTTTGAGAATTTGA+GGG	0.539961	3:+15238694	MsaT011930.1:CDS
CTGTTGTTACATGAGAATGT+TGG	0.540471	3:+15240809	MsaT011930.1:CDS
AGTCATTGGTGGCTCGATGA+AGG	0.546457	3:+15238730	MsaT011930.1:CDS
GAGGAATTGATGATATTGTA+GGG	0.550926	3:+15240864	MsaT011930.1:CDS
CCTTTAGAAGCAGGTAGAGG+AGG	0.553169	3:+15240845	MsaT011930.1:CDS
AGCCTCAACAAACGAGGTGA+GGG	0.559488	3:-15240140	None:intergenic
TGTTTGTCTAATATGCAAAA+CGG	0.565201	3:+15239864	MsaT011930.1:CDS
ACAAGGATCTCATTTCTCAA+TGG	0.566776	3:+15238269	MsaT011930.1:CDS
AAGCCTCAACAAACGAGGTG+AGG	0.569309	3:-15240141	None:intergenic
TGCTCTCTATGTGCTCTCCA+AGG	0.584461	3:+15236186	MsaT011930.1:CDS
GAAATGAGATCCTTGTATCA+GGG	0.596244	3:-15238262	None:intergenic
CACACTCGAGTTGATTGTGA+GGG	0.603583	3:-15238010	None:intergenic
TAACACCACTGATCATAGGA+TGG	0.625981	3:+15236111	MsaT011930.1:CDS
CTCAACAAACGAGGTGAGGG+TGG	0.629401	3:-15240137	None:intergenic
TACCTGCTTCTAAAGGAACT+CGG	0.631809	3:-15240838	None:intergenic
GATTGCTGAGTTCAATAACA+AGG	0.649486	3:-15236147	None:intergenic
TTAGATTGGGTAGAATCACC+AGG	0.651677	3:-15236091	None:intergenic
ATCAAAAGCCTCAACAAACG+AGG	0.660997	3:-15240146	None:intergenic
GCACACTCGAGTTGATTGTG+AGG	0.665692	3:-15238011	None:intergenic
GTAAGCCATCCTATGATCAG+TGG	0.669763	3:-15236116	None:intergenic
TGTGAGGGAGAGAGATTCGG+TGG	0.689243	3:-15237995	None:intergenic
GTTGTTACATGAGAATGTTG+GGG	0.746517	3:+15240811	MsaT011930.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	15236031	15240907	15236031	ID=MsaG011930
Chr3	mRNA	15236031	15240907	15236031	ID=MsaT011930.1;Parent=MsaG011930
Chr3	exon	15236031	15236207	15236031	ID=MsaT011930.1.exon1;Parent=MsaT011930.1
Chr3	CDS	15236031	15236207	15236031	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15237237	15237308	15237237	ID=MsaT011930.1.exon2;Parent=MsaT011930.1
Chr3	CDS	15237237	15237308	15237237	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15237965	15238054	15237965	ID=MsaT011930.1.exon3;Parent=MsaT011930.1
Chr3	CDS	15237965	15238054	15237965	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15238248	15238290	15238248	ID=MsaT011930.1.exon4;Parent=MsaT011930.1
Chr3	CDS	15238248	15238290	15238248	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15238645	15238751	15238645	ID=MsaT011930.1.exon5;Parent=MsaT011930.1
Chr3	CDS	15238645	15238751	15238645	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15239810	15239905	15239810	ID=MsaT011930.1.exon6;Parent=MsaT011930.1
Chr3	CDS	15239810	15239905	15239810	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15240011	15240201	15240011	ID=MsaT011930.1.exon7;Parent=MsaT011930.1
Chr3	CDS	15240011	15240201	15240011	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15240294	15240363	15240294	ID=MsaT011930.1.exon8;Parent=MsaT011930.1
Chr3	CDS	15240294	15240363	15240294	ID=cds.MsaT011930.1;Parent=MsaT011930.1
Chr3	exon	15240782	15240907	15240782	ID=MsaT011930.1.exon9;Parent=MsaT011930.1
Chr3	CDS	15240782	15240907	15240782	ID=cds.MsaT011930.1;Parent=MsaT011930.1

Gene Sequence

>MsaT011930.1

ATGGCACACTTTACTCCTCAATCGCTCTCAACAAAGAACAATGCATCGTTTATAGCTTTTCCTGGTGATTCTACCCAATCTAACACCACTGATCATAGGATGGCTTACATGCAAAGCCTTGTTATTGAACTCAGCAATCCGGATCTTAGAGAAAATGCTCTCTATGTGCTCTCCAAGAGCACCAAGTTATTTGAGGAACTTGGACCTTTATTATGGAATACTGTTGGTACTATTGCAGTATTTTTACAGGAAATACTTTCAATATATCCTACTCTTTCACCACCGAATCTCTCTCCCTCACAATCAACTCGAGTGTGCAATGTTCTTGCACTACTTCAGTGTGTGGCATCTCACCCTGATACAAGGATCTCATTTCTCAATGCTAATATGCCTTTATATTTATATCCATTCCTTAAAACAACAAGCAAGTTAACACAGTTTGAGAATTTGAGGGTTGCTAGTCTTGGAGTCATTGGTGGCTCGATGAAGGTTAACACCAAAGAAGTCATAGGTTTCTATCTCTCAAGTGAGATAATTTCACTATGTTTGTCTAATATGCAAAACGGCAATGAATTGACAAAAATTGTTGCAACATTTATAATTCTGAAAATTATATTAGACGATGATGGTTTGGCTCGTGTTTGTGCTACAATAGAGAATTTTTTTGGAGTATGTCGAGTTTTGAACATGATGTTGGAAGATCTTGAGAATCCACCCTCACCTCGTTTGTTGAGGCTTTTGATTTCATGTTATTCTCGCTTATCTCAAAATTACAGGGCTAGAGTTGCATTAACAACTTATCTTCCAAACAGGCTCAAAGATGCCAATCTCATCAATTTTTTTCGTGATGATCCAAAAACTATGAGGTTGGTACTGTTGTTACATGAGAATGTTGGGGTGAACCGAGTTCCTTTAGAAGCAGGTAGAGGAGGAATTGATGATATTGTAGGGCCATCATTATCAAGAAAATGA

Protein sequence

>MsaT011930.1

MAHFTPQSLSTKNNASFIAFPGDSTQSNTTDHRMAYMQSLVIELSNPDLRENALYVLSKSTKLFEELGPLLWNTVGTIAVFLQEILSIYPTLSPPNLSPSQSTRVCNVLALLQCVASHPDTRISFLNANMPLYLYPFLKTTSKLTQFENLRVASLGVIGGSMKVNTKEVIGFYLSSEIISLCLSNMQNGNELTKIVATFIILKIILDDDGLARVCATIENFFGVCRVLNMMLEDLENPPSPRLLRLLISCYSRLSQNYRARVALTTYLPNRLKDANLINFFRDDPKTMRLVLLLHENVGVNRVPLEAGRGGIDDIVGPSLSRK*