Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011970 | XP_039687301.1 | 94.436 | 1330 | 56 | 3 | 2 | 1313 | 3 | 1332 | 0.0 | 2554 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011970 | sp|Q9M1I1|FB304_ARATH | 53.038 | 1399 | 514 | 21 | 11 | 1313 | 5 | 1356 | 0.0 | 1410 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011970 | tr|A0A396ILR4|A0A396ILR4_MEDTR | 94.361 | 1330 | 56 | 4 | 2 | 1313 | 3 | 1331 | 0.0 | 2548 |
Gene ID | Type | Classification |
---|---|---|
MsaG011970 | TR | SNF2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG011970 | MsaG021741 | 0.814986 | 2.015171e-51 | 3.894165e-49 |
MsaG011970 | MsaG041863 | 0.875849 | 4.628465e-68 | 6.912918e-65 |
MsaG011970 | MsaG046735 | 0.800170 | 2.731119e-48 | 3.706708e-46 |
MsaG011970 | MsaG036002 | 0.822117 | 4.951722e-53 | 1.151931e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011970 | MtrunA17_Chr3g0083491 | 94.361 | 1330 | 56 | 4 | 2 | 1313 | 3 | 1331 | 0.0 | 2548 |
MsaG011970 | MtrunA17_Chr2g0320751 | 26.316 | 608 | 314 | 23 | 712 | 1276 | 476 | 992 | 2.21e-38 | 156 |
MsaG011970 | MtrunA17_Chr1g0168031 | 23.394 | 607 | 340 | 19 | 711 | 1266 | 588 | 1120 | 1.06e-25 | 115 |
MsaG011970 | MtrunA17_Chr2g0281601 | 22.292 | 637 | 391 | 20 | 712 | 1271 | 661 | 1270 | 8.31e-23 | 106 |
MsaG011970 | MtrunA17_Chr7g0255821 | 30.568 | 229 | 138 | 7 | 712 | 933 | 294 | 508 | 7.70e-21 | 99.4 |
MsaG011970 | MtrunA17_Chr7g0255821 | 27.815 | 151 | 105 | 2 | 1152 | 1299 | 668 | 817 | 1.46e-13 | 75.9 |
MsaG011970 | MtrunA17_Chr4g0024921 | 22.430 | 535 | 292 | 17 | 779 | 1269 | 447 | 902 | 4.11e-20 | 97.1 |
MsaG011970 | MtrunA17_Chr1g0212331 | 28.488 | 172 | 112 | 4 | 1130 | 1300 | 871 | 1032 | 3.63e-16 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG011970 | AT3G54460.1 | 53.038 | 1399 | 514 | 21 | 11 | 1313 | 5 | 1356 | 0.0 | 1410 |
MsaG011970 | AT3G54460.2 | 56.438 | 1095 | 396 | 12 | 258 | 1313 | 7 | 1059 | 0.0 | 1213 |
MsaG011970 | AT5G22750.1 | 25.574 | 610 | 312 | 20 | 714 | 1276 | 491 | 1005 | 9.56e-41 | 164 |
MsaG011970 | AT1G11100.5 | 25.596 | 629 | 396 | 24 | 714 | 1308 | 491 | 1081 | 1.12e-33 | 141 |
MsaG011970 | AT1G11100.1 | 25.596 | 629 | 396 | 24 | 714 | 1308 | 634 | 1224 | 1.53e-33 | 141 |
MsaG011970 | AT1G11100.3 | 24.368 | 673 | 393 | 24 | 714 | 1308 | 491 | 1125 | 1.47e-30 | 131 |
MsaG011970 | AT1G11100.4 | 24.368 | 673 | 393 | 24 | 714 | 1308 | 634 | 1268 | 1.82e-30 | 131 |
MsaG011970 | AT1G11100.2 | 24.368 | 673 | 393 | 24 | 714 | 1308 | 633 | 1267 | 2.23e-30 | 131 |
MsaG011970 | AT1G61140.3 | 22.831 | 657 | 390 | 21 | 714 | 1302 | 508 | 1115 | 1.64e-25 | 115 |
MsaG011970 | AT1G61140.1 | 22.831 | 657 | 390 | 21 | 714 | 1302 | 666 | 1273 | 1.86e-25 | 115 |
MsaG011970 | AT3G20010.2 | 22.624 | 663 | 399 | 21 | 714 | 1300 | 124 | 748 | 2.20e-25 | 114 |
MsaG011970 | AT1G50410.2 | 25.000 | 520 | 331 | 19 | 782 | 1275 | 466 | 952 | 4.60e-23 | 107 |
MsaG011970 | AT1G50410.1 | 25.000 | 520 | 331 | 19 | 782 | 1275 | 466 | 952 | 4.60e-23 | 107 |
MsaG011970 | AT1G50410.3 | 25.000 | 520 | 331 | 19 | 782 | 1275 | 466 | 952 | 4.60e-23 | 107 |
MsaG011970 | AT5G05130.1 | 29.545 | 220 | 137 | 8 | 705 | 918 | 349 | 556 | 3.18e-19 | 94.7 |
MsaG011970 | AT5G43530.1 | 24.425 | 348 | 206 | 11 | 714 | 1029 | 742 | 1064 | 1.62e-17 | 89.4 |
MsaG011970 | AT5G43530.1 | 30.657 | 137 | 94 | 1 | 1131 | 1266 | 1108 | 1244 | 6.80e-14 | 77.4 |
MsaG011970 | AT1G02670.3 | 32.479 | 117 | 78 | 1 | 1152 | 1267 | 539 | 655 | 3.47e-15 | 81.3 |
MsaG011970 | AT1G02670.6 | 32.479 | 117 | 78 | 1 | 1152 | 1267 | 512 | 628 | 3.54e-15 | 81.3 |
MsaG011970 | AT1G02670.7 | 32.479 | 117 | 78 | 1 | 1152 | 1267 | 516 | 632 | 5.91e-15 | 80.5 |
MsaG011970 | AT1G02670.1 | 32.479 | 117 | 78 | 1 | 1152 | 1267 | 527 | 643 | 6.32e-15 | 80.5 |
MsaG011970 | AT1G05120.2 | 31.092 | 119 | 81 | 1 | 1152 | 1269 | 725 | 843 | 1.27e-14 | 79.7 |
MsaG011970 | AT1G05120.1 | 31.092 | 119 | 81 | 1 | 1152 | 1269 | 682 | 800 | 1.27e-14 | 79.7 |
MsaG011970 | AT3G20010.3 | 24.150 | 294 | 200 | 8 | 1015 | 1300 | 495 | 773 | 2.32e-14 | 78.6 |
MsaG011970 | AT3G20010.1 | 24.138 | 290 | 197 | 8 | 1015 | 1296 | 761 | 1035 | 3.78e-14 | 78.2 |
MsaG011970 | AT3G20010.5 | 24.138 | 290 | 197 | 8 | 1015 | 1296 | 761 | 1035 | 3.78e-14 | 78.2 |
MsaG011970 | AT3G20010.7 | 24.138 | 290 | 197 | 8 | 1015 | 1296 | 761 | 1035 | 3.78e-14 | 78.2 |
MsaG011970 | AT1G02670.5 | 31.068 | 103 | 70 | 1 | 1152 | 1253 | 512 | 614 | 7.13e-12 | 70.5 |
MsaG011970 | AT1G02670.2 | 31.068 | 103 | 70 | 1 | 1152 | 1253 | 539 | 641 | 7.46e-12 | 70.5 |
Find 291 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGCTTGTCAATAGAAATTT+TGG | 0.175597 | 3:-15857880 | None:intergenic |
CCGAAATCTGGTTCTGTTGC+TGG | 0.192784 | 3:+15854629 | MsaT011970.1:CDS |
CTCCGAAATTTCCACTGTTT+TGG | 0.214009 | 3:-15858827 | None:intergenic |
TGTTGAATGAACAGGATAAT+TGG | 0.223532 | 3:+15859430 | MsaT011970.1:intron |
CTGATCAGGATTTAACAATT+TGG | 0.226507 | 3:-15857250 | None:intergenic |
CATTGCGTTGAATCGATAAT+TGG | 0.231827 | 3:-15854392 | None:intergenic |
GGTAGTTGTTCCAGCAAATT+TGG | 0.245133 | 3:+15858148 | MsaT011970.1:CDS |
TGATGTTTATCTTCCGGTTT+TGG | 0.272070 | 3:+15854583 | MsaT011970.1:CDS |
TGGAGGTTGATTCTAGGGTT+AGG | 0.272143 | 3:+15854546 | MsaT011970.1:CDS |
TAATGCAAGTGCACTGGTTT+AGG | 0.287123 | 3:+15858345 | MsaT011970.1:CDS |
CATCTGCGCACTCGCTTGCC+TGG | 0.292942 | 3:+15858252 | MsaT011970.1:CDS |
CAGCAAATTTGGTTGATCAT+TGG | 0.295875 | 3:+15858159 | MsaT011970.1:CDS |
CCAGAGGTTGAAAGCTTTGC+AGG | 0.299028 | 3:+15859500 | MsaT011970.1:CDS |
CAATGATCAACCAAATTTGC+TGG | 0.299556 | 3:-15858158 | None:intergenic |
ATACTGGCGGATCTGGGATT+TGG | 0.301244 | 3:+15856663 | MsaT011970.1:CDS |
GTTGATACTTCATATGGTTC+TGG | 0.303091 | 3:+15857513 | MsaT011970.1:CDS |
GTGTTGTGGAGGTTGATTCT+AGG | 0.304442 | 3:+15854540 | MsaT011970.1:CDS |
TTCCTTCATGAAGAAGCTTA+TGG | 0.308034 | 3:+15858530 | MsaT011970.1:CDS |
CACAAAGTATTTCAAGCATT+TGG | 0.310911 | 3:+15857981 | MsaT011970.1:CDS |
TCTGGCCGTGCCATTGAATC+AGG | 0.311287 | 3:-15859259 | None:intergenic |
TGGGCCCACTGGACCTCAAT+AGG | 0.312568 | 3:+15856726 | MsaT011970.1:CDS |
AATGGTCTAGATTCTACTTC+AGG | 0.317795 | 3:+15858953 | MsaT011970.1:CDS |
TATTGACAAGCTTGCAGAAA+TGG | 0.319995 | 3:+15857890 | MsaT011970.1:CDS |
AGGCTTTCATGCTGTGTTGC+TGG | 0.327727 | 3:+15858869 | MsaT011970.1:CDS |
CTAGATGTTGATTGCCAATC+AGG | 0.333695 | 3:-15859456 | None:intergenic |
ATGGACAATACTGGCGGATC+TGG | 0.335524 | 3:+15856656 | MsaT011970.1:CDS |
AAAGTGCAGTTGTTTAAAAT+AGG | 0.342173 | 3:-15857933 | None:intergenic |
ATCCAAAACAGTGGAAATTT+CGG | 0.343593 | 3:+15858825 | MsaT011970.1:CDS |
TTGGAGAAAATGAGAGCATT+TGG | 0.344489 | 3:+15856477 | MsaT011970.1:CDS |
TACTGGCGGATCTGGGATTT+GGG | 0.346850 | 3:+15856664 | MsaT011970.1:CDS |
GTCAATTGCATGTTTATGTT+TGG | 0.351216 | 3:+15858213 | MsaT011970.1:CDS |
CTTTCTGATTGTCATGTACT+TGG | 0.351744 | 3:+15856503 | MsaT011970.1:CDS |
GGAGGTTGATTCTAGGGTTA+GGG | 0.353484 | 3:+15854547 | MsaT011970.1:CDS |
GGGTGGCAGTTTCCGAAATC+TGG | 0.356692 | 3:+15854617 | MsaT011970.1:CDS |
TTCCATGTAAATACTGTAAC+TGG | 0.361846 | 3:+15856926 | MsaT011970.1:CDS |
GTTAATGGTATCAAATATAC+TGG | 0.364522 | 3:+15859834 | MsaT011970.1:CDS |
TCTCTGTGAGCCATTAGATT+TGG | 0.364555 | 3:+15858097 | MsaT011970.1:CDS |
AAAGCTTGCGGATAACAGTA+TGG | 0.366539 | 3:+15857626 | MsaT011970.1:CDS |
TAATGCTACTTGAACATTCC+TGG | 0.371689 | 3:-15859620 | None:intergenic |
TGCTGAAAGCAATTATCTAC+TGG | 0.373523 | 3:+15860808 | MsaT011970.1:CDS |
GTTGATAGAGCTGCATATAA+AGG | 0.376494 | 3:-15856887 | None:intergenic |
GCGAAGAAGGTGAAGAAGGT+TGG | 0.378619 | 3:+15854431 | MsaT011970.1:CDS |
GTTGCAAATGACTATTTCAT+TGG | 0.380919 | 3:+15858421 | MsaT011970.1:CDS |
CTTGGGGTACAGACCACTTT+GGG | 0.382124 | 3:-15859291 | None:intergenic |
GAAGCGTAAAGTTGATTGTT+TGG | 0.386718 | 3:+15857557 | MsaT011970.1:CDS |
GGGTCGTTTGCGGTGGTCAT+TGG | 0.389303 | 3:-15854218 | None:intergenic |
GCTAATGTTTCCACATGAAT+AGG | 0.389546 | 3:-15860471 | None:intergenic |
TTGTAACTCAATAAGATCTT+GGG | 0.390486 | 3:-15859308 | None:intergenic |
TCAAATCGGTGGATACTAAC+TGG | 0.393580 | 3:+15858449 | MsaT011970.1:CDS |
AAACAGGAGACTGTATCTTA+TGG | 0.393932 | 3:-15858987 | None:intergenic |
AATTAAAATTCTATATTCCC+TGG | 0.394953 | 3:+15856706 | MsaT011970.1:CDS |
AAGAAGGTTGGGATGGTGAA+TGG | 0.398183 | 3:+15854443 | MsaT011970.1:CDS |
GTTGTAACTCAATAAGATCT+TGG | 0.398290 | 3:-15859309 | None:intergenic |
TCCACGAAAATCTTTGATAG+TGG | 0.398654 | 3:-15856972 | None:intergenic |
AAGCTTGTTGATACTTCATA+TGG | 0.400306 | 3:+15857507 | MsaT011970.1:CDS |
ATTGTCCATAGGTATTATCT+TGG | 0.402393 | 3:-15856642 | None:intergenic |
GTTGAATGAACAGGATAATT+GGG | 0.403727 | 3:+15859431 | MsaT011970.1:intron |
GTGAGCCATTAGATTTGGTT+AGG | 0.403839 | 3:+15858102 | MsaT011970.1:CDS |
CCTGCAAAGCTTTCAACCTC+TGG | 0.409697 | 3:-15859500 | None:intergenic |
AGAGCTTATGCAGCTGTGAT+TGG | 0.410613 | 3:+15856405 | MsaT011970.1:intron |
CCTTGTTGCTAGAATGCATT+GGG | 0.411990 | 3:-15859866 | None:intergenic |
GGTACAGACCACTTTGGGTT+AGG | 0.415400 | 3:-15859286 | None:intergenic |
CCCCTGTGAGCGGTTCTTCA+AGG | 0.417381 | 3:+15856540 | MsaT011970.1:CDS |
CCAGCAACAGAACCAGATTT+CGG | 0.421076 | 3:-15854629 | None:intergenic |
AGATGTGTAAGTTGGCTGTT+AGG | 0.423057 | 3:-15858491 | None:intergenic |
CTGTTCTTAAAAGACTGTTC+TGG | 0.424653 | 3:-15857714 | None:intergenic |
CCAGCACGATTCAAATTGTA+TGG | 0.427164 | 3:+15860036 | MsaT011970.1:CDS |
GGGCCCACTGGACCTCAATA+GGG | 0.428655 | 3:+15856727 | MsaT011970.1:CDS |
TGTGAATCAGCTTCATGCTT+TGG | 0.428794 | 3:+15854478 | MsaT011970.1:CDS |
ACAACTGCACTTTGTCCAAC+GGG | 0.430181 | 3:+15857943 | MsaT011970.1:CDS |
TCATTCCGCATCATCATTCC+AGG | 0.431472 | 3:+15859602 | MsaT011970.1:CDS |
AGAGAAAACCACAGAGTTTG+TGG | 0.431603 | 3:-15854250 | None:intergenic |
AAGTAGAGAAAGGTGTATAC+AGG | 0.433050 | 3:+15858015 | MsaT011970.1:CDS |
TATACATGTCATTGAACAAC+AGG | 0.433121 | 3:+15859695 | MsaT011970.1:CDS |
CTCTTTCAGAGGAGAAATCA+TGG | 0.434595 | 3:-15857227 | None:intergenic |
CCACTACTCCAAACCAAAAC+CGG | 0.434938 | 3:-15854596 | None:intergenic |
AGTATCTTTCTACAGTAGTC+TGG | 0.436177 | 3:-15856455 | None:intergenic |
ATTTGAATCGTGCTGGAACT+TGG | 0.438632 | 3:-15860029 | None:intergenic |
CGAAGAAGGTGAAGAAGGTT+GGG | 0.440804 | 3:+15854432 | MsaT011970.1:CDS |
TATAACCTAACCAAATCTAA+TGG | 0.441840 | 3:-15858107 | None:intergenic |
CACAAATAGAAAAGCATGTC+AGG | 0.443390 | 3:+15858186 | MsaT011970.1:CDS |
TCTATATTCCCTGGGCCCAC+TGG | 0.443461 | 3:+15856715 | MsaT011970.1:CDS |
CAAATTGTTAAATCCTGATC+AGG | 0.446046 | 3:+15857251 | MsaT011970.1:CDS |
TAGCCGTTTGAGTGCGGAGT+GGG | 0.446474 | 3:+15858301 | MsaT011970.1:CDS |
TATTTCCAAGATAATACCTA+TGG | 0.446650 | 3:+15856637 | MsaT011970.1:CDS |
TGTACACTTTGTCTTGTCAA+TGG | 0.446929 | 3:-15859200 | None:intergenic |
TTTGCCAACTCTTCTTTCGT+TGG | 0.447961 | 3:-15857430 | None:intergenic |
AGGATAATTGGGATCCTGAT+TGG | 0.449928 | 3:+15859442 | MsaT011970.1:intron |
ATAATACCTATGGACAATAC+TGG | 0.450114 | 3:+15856647 | MsaT011970.1:CDS |
TGTTGTGGAGGTTGATTCTA+GGG | 0.450644 | 3:+15854541 | MsaT011970.1:CDS |
TTTCATTGGTTGCTTCAAAT+CGG | 0.451100 | 3:+15858435 | MsaT011970.1:CDS |
GCTTGAAATACTTTGTGGTA+TGG | 0.451295 | 3:-15857975 | None:intergenic |
GATGGATGGGAGTGCTGCAT+TGG | 0.453061 | 3:+15860066 | MsaT011970.1:CDS |
TGATGTGGCTGCCCTTGGTA+TGG | 0.453648 | 3:+15858073 | MsaT011970.1:CDS |
ATCTGCGCACTCGCTTGCCT+GGG | 0.456519 | 3:+15858253 | MsaT011970.1:CDS |
CAGATGGGTCACCAGTAGTC+TGG | 0.456981 | 3:+15857083 | MsaT011970.1:CDS |
ATAAGATACAGTCTCCTGTT+TGG | 0.458193 | 3:+15858989 | MsaT011970.1:CDS |
GCAACTTGTTTGTTAAGCTC+AGG | 0.460038 | 3:-15858403 | None:intergenic |
TTAGATGAAGGGCATACTCT+TGG | 0.462268 | 3:+15858374 | MsaT011970.1:CDS |
AATTTGCTGGAACAACTACC+AGG | 0.463905 | 3:-15858145 | None:intergenic |
ATGGATGGGAGTGCTGCATT+GGG | 0.465054 | 3:+15860067 | MsaT011970.1:CDS |
CATGGGATGCTGGCGTGCTT+AGG | 0.467040 | 3:+15858567 | MsaT011970.1:CDS |
CAAATGCTTGAAATACTTTG+TGG | 0.470118 | 3:-15857980 | None:intergenic |
GGTTTAGTGATTTCCTGATC+AGG | 0.470225 | 3:-15857264 | None:intergenic |
ATTTACCTTCTGTCCCAGAT+TGG | 0.471541 | 3:-15860130 | None:intergenic |
TGTTCGGCGTAATATATTGA+TGG | 0.471628 | 3:+15858763 | MsaT011970.1:CDS |
ATTAAAATTCTATATTCCCT+GGG | 0.473601 | 3:+15856707 | MsaT011970.1:CDS |
GATTGTTGATGTTTATCTTC+CGG | 0.475214 | 3:+15854577 | MsaT011970.1:CDS |
AGAAGGTTGGGATGGTGAAT+GGG | 0.475682 | 3:+15854444 | MsaT011970.1:CDS |
CACCAGTTACAGTATTTACA+TGG | 0.476766 | 3:-15856928 | None:intergenic |
CGAGAGTTCGAGTGCGAAGA+AGG | 0.476982 | 3:+15854418 | MsaT011970.1:CDS |
ATCAGCAGGCAGCAGTTGAA+TGG | 0.479240 | 3:+15856825 | MsaT011970.1:CDS |
CTTGCAGAAATGGAAACAAA+TGG | 0.479957 | 3:+15857900 | MsaT011970.1:CDS |
ATGTCGACATGGCGTAATGA+AGG | 0.480995 | 3:-15859155 | None:intergenic |
TCCCTTGAAGAACCGCTCAC+AGG | 0.482011 | 3:-15856542 | None:intergenic |
TAACTGGTGATATAGTCATC+GGG | 0.482511 | 3:+15856942 | MsaT011970.1:CDS |
TATTCCTCAGAGCAAGCATC+AGG | 0.483783 | 3:-15857324 | None:intergenic |
TGACACAGTGGCCACCAAAC+AGG | 0.484233 | 3:-15859003 | None:intergenic |
GTCCATAAGCTTCTTCATGA+AGG | 0.485696 | 3:-15858532 | None:intergenic |
TATTGAGGTCCAGTGGGCCC+AGG | 0.485759 | 3:-15856724 | None:intergenic |
ATGCATGATTAGTGCTAGAA+AGG | 0.486577 | 3:+15858646 | MsaT011970.1:CDS |
ATGGTCTAGATTCTACTTCA+GGG | 0.489153 | 3:+15858954 | MsaT011970.1:CDS |
ACACGCTGGAGAAGATATTC+AGG | 0.491050 | 3:+15858907 | MsaT011970.1:CDS |
AATTAGTCGTGCCCATCGTA+TGG | 0.491970 | 3:+15860437 | MsaT011970.1:CDS |
TGGCGTGCTTAGGCCATTCG+AGG | 0.492502 | 3:+15858577 | MsaT011970.1:CDS |
AAATTGTATGGCACTTCTGA+TGG | 0.494975 | 3:+15860048 | MsaT011970.1:CDS |
CCCTTGAAGAACCGCTCACA+GGG | 0.495081 | 3:-15856541 | None:intergenic |
CAGGCAAGCGAGTGCGCAGA+TGG | 0.495564 | 3:-15858251 | None:intergenic |
CAGACTACTGGTGACCCATC+TGG | 0.497077 | 3:-15857082 | None:intergenic |
TTACCAGGATTTCACTTGAA+AGG | 0.498175 | 3:+15857753 | MsaT011970.1:CDS |
GATGCAAAGTCCTGATTCAA+TGG | 0.499559 | 3:+15859249 | MsaT011970.1:CDS |
TTTATGTTTGGAACGATCAT+CGG | 0.500097 | 3:+15858225 | MsaT011970.1:CDS |
CTGTTAGGAGTGTTCGATGT+TGG | 0.500631 | 3:-15858476 | None:intergenic |
AAATCTGTTTCCTCATCAGC+AGG | 0.501336 | 3:+15856811 | MsaT011970.1:CDS |
TCAACTGCTGCCTGCTGATG+AGG | 0.502624 | 3:-15856821 | None:intergenic |
ACTCTACAACTCTGATACAA+AGG | 0.503506 | 3:-15857690 | None:intergenic |
ACCTTGTTGCTAGAATGCAT+TGG | 0.503718 | 3:-15859867 | None:intergenic |
AACAGATTTAACTTTGTGCA+AGG | 0.507122 | 3:-15856797 | None:intergenic |
CTTCTAGTGCACCGACTCGC+AGG | 0.507703 | 3:-15857351 | None:intergenic |
CCATACAATTTGAATCGTGC+TGG | 0.508271 | 3:-15860036 | None:intergenic |
ACTACTCATTGGTAAATTCT+CGG | 0.510262 | 3:+15857832 | MsaT011970.1:CDS |
GTAATATATTGATGGCTGAT+TGG | 0.511643 | 3:+15858771 | MsaT011970.1:CDS |
GGCCCCACTCCGCACTCAAA+CGG | 0.512630 | 3:-15858304 | None:intergenic |
GTTCCTTTCAAGTGAAATCC+TGG | 0.515719 | 3:-15857756 | None:intergenic |
GCTTAAGGAGCACTACTCAT+TGG | 0.516177 | 3:+15857821 | MsaT011970.1:CDS |
ATAGAAAAGCATGTCAGGCC+TGG | 0.517076 | 3:+15858191 | MsaT011970.1:CDS |
TCTTCCATCTCTGCCTCGAA+TGG | 0.518095 | 3:-15858590 | None:intergenic |
CCCTGTGAGCGGTTCTTCAA+GGG | 0.522105 | 3:+15856541 | MsaT011970.1:CDS |
AAGAACCGCTCACAGGGGAA+TGG | 0.522294 | 3:-15856535 | None:intergenic |
AACAACTGCACTTTGTCCAA+CGG | 0.522924 | 3:+15857942 | MsaT011970.1:CDS |
GACTACTGTAGAAAGATACT+TGG | 0.523086 | 3:+15856458 | MsaT011970.1:CDS |
AGCCATGCCTGCGCATAAGA+AGG | 0.527424 | 3:-15859331 | None:intergenic |
TCTTGGGGTACAGACCACTT+TGG | 0.527858 | 3:-15859292 | None:intergenic |
TGGACAATACTGGCGGATCT+GGG | 0.528838 | 3:+15856657 | MsaT011970.1:CDS |
AATGTGATGCTTGTCACAAA+TGG | 0.532521 | 3:+15857601 | MsaT011970.1:CDS |
CTCTGCTGATTTCCTACACA+AGG | 0.532791 | 3:-15856608 | None:intergenic |
AAAACAACTTTCTTGATGCA+TGG | 0.533458 | 3:-15858689 | None:intergenic |
AAGACAAAGTGTACATATCC+TGG | 0.533923 | 3:+15859208 | MsaT011970.1:CDS |
CACAAAGACGCAAGGTACAT+TGG | 0.534529 | 3:+15857051 | MsaT011970.1:CDS |
CACATCTACAACCATTGCTA+AGG | 0.537808 | 3:+15858507 | MsaT011970.1:CDS |
ATTTCCAACGAAAGAAGAGT+TGG | 0.540007 | 3:+15857426 | MsaT011970.1:CDS |
ATGAGTTGGTACTCACTGTT+CGG | 0.540678 | 3:+15858747 | MsaT011970.1:CDS |
AGGAATTACTGAAGCAGCCA+AGG | 0.540726 | 3:-15856777 | None:intergenic |
CCTCATGATTCATGTTCTGT+AGG | 0.541036 | 3:+15857285 | MsaT011970.1:CDS |
CATTGGTTGCTTCAAATCGG+TGG | 0.542676 | 3:+15858438 | MsaT011970.1:CDS |
AGGAATATTCGCCTGCGAGT+CGG | 0.543870 | 3:+15857340 | MsaT011970.1:CDS |
GTTACAACCTTCTTATGCGC+AGG | 0.544047 | 3:+15859324 | MsaT011970.1:CDS |
ATCAGTGGTAATAACACGGC+TGG | 0.544193 | 3:+15857145 | MsaT011970.1:CDS |
GTTACAGTCTTACCCAAGCC+AGG | 0.544684 | 3:-15857013 | None:intergenic |
ATCGCGTTTCGTACTCAAAA+CGG | 0.544800 | 3:+15854356 | MsaT011970.1:CDS |
GGTTGAGAGAGGGTCGTTTG+CGG | 0.545076 | 3:-15854228 | None:intergenic |
GAGAAAACCACAGAGTTTGT+GGG | 0.545584 | 3:-15854249 | None:intergenic |
CTCTACAACTCTGATACAAA+GGG | 0.545584 | 3:-15857689 | None:intergenic |
GCAGCTCTATCAACTGATGA+TGG | 0.546385 | 3:+15856896 | MsaT011970.1:CDS |
ATTGGTAAATTCTCGGACAA+AGG | 0.547067 | 3:+15857839 | MsaT011970.1:CDS |
ATTTCACTTGAAAGGAACTC+CGG | 0.547183 | 3:+15857761 | MsaT011970.1:CDS |
GACAGAGTTACAAGTGGCAT+GGG | 0.550843 | 3:+15857535 | MsaT011970.1:CDS |
CAGAGTTTGTGGGTTGAGAG+AGG | 0.551453 | 3:-15854239 | None:intergenic |
TAGGCCATTCGAGGCAGAGA+TGG | 0.555199 | 3:+15858586 | MsaT011970.1:CDS |
CCCAATGCATTCTAGCAACA+AGG | 0.557176 | 3:+15859866 | MsaT011970.1:CDS |
TGTATGGCACTTCTGATGGA+TGG | 0.557768 | 3:+15860052 | MsaT011970.1:CDS |
ATTGAGGTCCAGTGGGCCCA+GGG | 0.559176 | 3:-15856723 | None:intergenic |
TCCTACACAAGGGGAAGGTA+CGG | 0.560133 | 3:-15856597 | None:intergenic |
GGACAAAGGAGGCTCTGACT+TGG | 0.560926 | 3:+15857853 | MsaT011970.1:CDS |
GAGTGCGAAGAAGGTGAAGA+AGG | 0.561114 | 3:+15854427 | MsaT011970.1:CDS |
TCTAAGATAACTTACTTACC+AGG | 0.562932 | 3:+15857738 | MsaT011970.1:CDS |
TACATTTAGCCGTTTGAGTG+CGG | 0.563559 | 3:+15858295 | MsaT011970.1:CDS |
CCACGAAAATCTTTGATAGT+GGG | 0.564131 | 3:-15856971 | None:intergenic |
GGACAGAGTTACAAGTGGCA+TGG | 0.565878 | 3:+15857534 | MsaT011970.1:CDS |
GAAGGTGAAGAAGGTTGGGA+TGG | 0.566498 | 3:+15854436 | MsaT011970.1:CDS |
GTGCTCTAATGCAAGTGCAC+TGG | 0.567512 | 3:+15858339 | MsaT011970.1:CDS |
CGGAGGGGTTAGTGTGAGAA+CGG | 0.567994 | 3:-15854276 | None:intergenic |
ATTAGAGCACTCTTCTTACG+TGG | 0.568097 | 3:-15858326 | None:intergenic |
GTAACTGGTGATATAGTCAT+CGG | 0.568117 | 3:+15856941 | MsaT011970.1:CDS |
AGATACAGTCTCCTGTTTGG+TGG | 0.570067 | 3:+15858992 | MsaT011970.1:CDS |
AGAGCTGCATATAAAGGATG+TGG | 0.570630 | 3:-15856881 | None:intergenic |
AGAGTTTGTGGGTTGAGAGA+GGG | 0.570895 | 3:-15854238 | None:intergenic |
TGGAGCCAATCTGGGACAGA+AGG | 0.571632 | 3:+15860125 | MsaT011970.1:CDS |
GATGACAACATCATAATCCC+AGG | 0.571751 | 3:-15858270 | None:intergenic |
TTATGAATTTCGTAGGTGCA+AGG | 0.572108 | 3:+15859118 | MsaT011970.1:intron |
TGAGAGAGGGTCGTTTGCGG+TGG | 0.573498 | 3:-15854225 | None:intergenic |
ATGTCATCATCTAAGAGCCT+TGG | 0.574388 | 3:+15856760 | MsaT011970.1:CDS |
TGCGTCCCGTCCTATTCATG+TGG | 0.574636 | 3:+15860461 | MsaT011970.1:CDS |
TAACAATTTGGCTCTTTCAG+AGG | 0.574738 | 3:-15857238 | None:intergenic |
TTCGAGGCAGAGATGGAAGA+AGG | 0.574892 | 3:+15858593 | MsaT011970.1:CDS |
TCACAAATGGCGAAAGCTTG+CGG | 0.575828 | 3:+15857614 | MsaT011970.1:CDS |
CAGAAAATCCTAACCCAAAG+TGG | 0.576600 | 3:+15859278 | MsaT011970.1:CDS |
AAAGGAGGCTCTGACTTGGT+TGG | 0.577350 | 3:+15857857 | MsaT011970.1:CDS |
TTTCACTTGAAAGGAACTCC+GGG | 0.578633 | 3:+15857762 | MsaT011970.1:CDS |
TCATACAAGTTATCACAGCC+AGG | 0.581057 | 3:-15859226 | None:intergenic |
TTATGTTGACACCAGACTAC+TGG | 0.582238 | 3:-15857094 | None:intergenic |
ATTAGTCGTGCCCATCGTAT+GGG | 0.583520 | 3:+15860438 | MsaT011970.1:CDS |
AGAAGATATTCAGGAAACAA+TGG | 0.583877 | 3:+15858916 | MsaT011970.1:CDS |
TGAGCGGTTCTTCAAGGGAA+AGG | 0.588938 | 3:+15856546 | MsaT011970.1:CDS |
TGTCAATGGAAACACAATCA+AGG | 0.590521 | 3:-15859186 | None:intergenic |
ACATTGGCGGATCCACCAGA+TGG | 0.590534 | 3:+15857067 | MsaT011970.1:CDS |
GATGTTGTCAAATCTGAAGA+TGG | 0.590681 | 3:+15860752 | MsaT011970.1:CDS |
ATACTTGTCAAGAGCAACCC+TGG | 0.590847 | 3:+15858127 | MsaT011970.1:CDS |
GACGGGACGCACCCATACGA+TGG | 0.591504 | 3:-15860449 | None:intergenic |
TGTTTCCACATGAATAGGAC+GGG | 0.593054 | 3:-15860466 | None:intergenic |
TCATGAAGGAACCTTAGCAA+TGG | 0.594391 | 3:-15858518 | None:intergenic |
TTGTCAAATCTGAAGATGGT+GGG | 0.595354 | 3:+15860756 | MsaT011970.1:CDS |
TGCTAGAAGTTACAATGAGT+TGG | 0.601484 | 3:+15858733 | MsaT011970.1:CDS |
CAGAGGTTGAAAGCTTTGCA+GGG | 0.604660 | 3:+15859501 | MsaT011970.1:CDS |
AGCCGTTTGAGTGCGGAGTG+GGG | 0.605704 | 3:+15858302 | MsaT011970.1:CDS |
TGTCGACATGGCGTAATGAA+GGG | 0.607588 | 3:-15859154 | None:intergenic |
AAGCTTGCGGATAACAGTAT+GGG | 0.608301 | 3:+15857627 | MsaT011970.1:CDS |
GATCCGCCAGTATTGTCCAT+AGG | 0.610382 | 3:-15856653 | None:intergenic |
TCTCTTATCACAAAGACGCA+AGG | 0.612018 | 3:+15857043 | MsaT011970.1:CDS |
CATTGGCGGATCCACCAGAT+GGG | 0.612044 | 3:+15857068 | MsaT011970.1:CDS |
ACAACTTTCTTGATGCATGG+TGG | 0.612301 | 3:-15858686 | None:intergenic |
ACGGGACGCACCCATACGAT+GGG | 0.612774 | 3:-15860448 | None:intergenic |
GGTAAATTCTCGGACAAAGG+AGG | 0.613744 | 3:+15857842 | MsaT011970.1:CDS |
GAAACCCTATTGAGGTCCAG+TGG | 0.614244 | 3:-15856731 | None:intergenic |
GTATGGATTCACAGTCCCGT+TGG | 0.614716 | 3:-15857958 | None:intergenic |
AAAGACGCAAGGTACATTGG+CGG | 0.619575 | 3:+15857054 | MsaT011970.1:CDS |
GTATGGCACTTCTGATGGAT+GGG | 0.620158 | 3:+15860053 | MsaT011970.1:CDS |
AAACCCTATTGAGGTCCAGT+GGG | 0.622694 | 3:-15856730 | None:intergenic |
ATGTTGCAGAAACCCTATTG+AGG | 0.623777 | 3:-15856739 | None:intergenic |
CATATTAAAGTTACACACGC+TGG | 0.624968 | 3:+15858893 | MsaT011970.1:CDS |
ATGTTTCCACATGAATAGGA+CGG | 0.627738 | 3:-15860467 | None:intergenic |
ATGGTTGTAGATGTGTAAGT+TGG | 0.627824 | 3:-15858499 | None:intergenic |
AAGCTCCATTCCCCTGTGAG+CGG | 0.628644 | 3:+15856530 | MsaT011970.1:CDS |
AGTAGACTTTCCACATGCGA+AGG | 0.629550 | 3:-15858800 | None:intergenic |
GTCTACTGAATCCAAAACAG+TGG | 0.630419 | 3:+15858816 | MsaT011970.1:CDS |
AGTGGTAATAACACGGCTGG+TGG | 0.634167 | 3:+15857148 | MsaT011970.1:CDS |
CAGGAGACTGTATCTTATGG+AGG | 0.634908 | 3:-15858984 | None:intergenic |
AAAGTCCTGATTCAATGGCA+CGG | 0.635118 | 3:+15859254 | MsaT011970.1:CDS |
TTAGAGCACTCTTCTTACGT+GGG | 0.635425 | 3:-15858325 | None:intergenic |
CGAGATCAGTGGTAATAACA+CGG | 0.636732 | 3:+15857141 | MsaT011970.1:CDS |
ACCGTACCTTCCCCTTGTGT+AGG | 0.636865 | 3:+15856596 | MsaT011970.1:CDS |
ACCTCCTGATGCTTGCTCTG+AGG | 0.637926 | 3:+15857320 | MsaT011970.1:CDS |
CTCTCAACCCACAAACTCTG+TGG | 0.640032 | 3:+15854242 | MsaT011970.1:CDS |
ACATAAACATGCAATTGACC+AGG | 0.640310 | 3:-15858209 | None:intergenic |
AGGCAGAGATGGAAGAAGGT+CGG | 0.641182 | 3:+15858597 | MsaT011970.1:CDS |
TGGTCTAGATTCTACTTCAG+GGG | 0.641369 | 3:+15858955 | MsaT011970.1:CDS |
GCTCACAGAGAGCCATACCA+AGG | 0.642203 | 3:-15858085 | None:intergenic |
TGTCAAATCTGAAGATGGTG+GGG | 0.643211 | 3:+15860757 | MsaT011970.1:CDS |
AATTTCGTAGGTGCAAGGAA+TGG | 0.643325 | 3:+15859123 | MsaT011970.1:intron |
TAGAGAAAGGTGTATACAGG+TGG | 0.643392 | 3:+15858018 | MsaT011970.1:CDS |
TCCTCAGAGCAAGCATCAGG+AGG | 0.643607 | 3:-15857321 | None:intergenic |
TGGGTAATTCTAATGCAGCA+TGG | 0.644906 | 3:+15857646 | MsaT011970.1:CDS |
TGTAACTCAATAAGATCTTG+GGG | 0.649776 | 3:-15859307 | None:intergenic |
CTGCTGATTTCCTACACAAG+GGG | 0.650157 | 3:-15856606 | None:intergenic |
TTGGAATGATCCTTCGCATG+TGG | 0.651252 | 3:+15858790 | MsaT011970.1:CDS |
CACTTGAAAGGAACTCCGGG+TGG | 0.654146 | 3:+15857765 | MsaT011970.1:CDS |
CCTACAGAACATGAATCATG+AGG | 0.654419 | 3:-15857285 | None:intergenic |
CATGGCGTAATGAAGGGAGT+CGG | 0.663299 | 3:-15859148 | None:intergenic |
GTGGAAACATTAGCTATGCG+TGG | 0.666167 | 3:+15860480 | MsaT011970.1:CDS |
GTTTGGAGTACAGTGATACG+TGG | 0.666295 | 3:+15857574 | MsaT011970.1:CDS |
TGTGGCTATTACGAGATCAG+TGG | 0.666939 | 3:+15857130 | MsaT011970.1:CDS |
ACTACTGGTGACCCATCTGG+TGG | 0.667483 | 3:-15857079 | None:intergenic |
GCGGAATGACTTGTGTGCAA+AGG | 0.667601 | 3:-15859588 | None:intergenic |
GTCAAATCTGAAGATGGTGG+GGG | 0.669627 | 3:+15860758 | MsaT011970.1:CDS |
TCTATATTTCACAGATGACG+AGG | 0.671046 | 3:+15857395 | MsaT011970.1:CDS |
TTAGCCGTTTGAGTGCGGAG+TGG | 0.671278 | 3:+15858300 | MsaT011970.1:CDS |
ATACCTATGGACAATACTGG+CGG | 0.671595 | 3:+15856650 | MsaT011970.1:CDS |
TCTGCTGATTTCCTACACAA+GGG | 0.673987 | 3:-15856607 | None:intergenic |
GTTGTCAAATCTGAAGATGG+TGG | 0.674583 | 3:+15860755 | MsaT011970.1:CDS |
CTCACAGAGAGCCATACCAA+GGG | 0.681432 | 3:-15858084 | None:intergenic |
TGATTTCCTACACAAGGGGA+AGG | 0.681549 | 3:-15856602 | None:intergenic |
AGGCACAACATATGTCGACA+TGG | 0.683756 | 3:-15859166 | None:intergenic |
ATTATCGATTCAACGCAATG+CGG | 0.695186 | 3:+15854395 | MsaT011970.1:CDS |
AAGTTGCATATCTCGTCCAG+AGG | 0.698811 | 3:+15859484 | MsaT011970.1:CDS |
ATTTGCTGGAACAACTACCA+GGG | 0.699718 | 3:-15858144 | None:intergenic |
AACTGGTGATATAGTCATCG+GGG | 0.706873 | 3:+15856943 | MsaT011970.1:CDS |
ACATTCCTGGAATGATGATG+CGG | 0.709579 | 3:-15859607 | None:intergenic |
GTTCTGGACAGAGTTACAAG+TGG | 0.713387 | 3:+15857529 | MsaT011970.1:CDS |
AAACAGTGGAAATTTCGGAG+TGG | 0.715062 | 3:+15858830 | MsaT011970.1:CDS |
AAGTAGCATTAGTACCAATG+TGG | 0.718006 | 3:+15859632 | MsaT011970.1:CDS |
CCTTGAAGAACCGCTCACAG+GGG | 0.734849 | 3:-15856540 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 15854221 | 15860847 | 15854221 | ID=MsaG011970 |
Chr3 | mRNA | 15854221 | 15860847 | 15854221 | ID=MsaT011970.1;Parent=MsaG011970 |
Chr3 | exon | 15854221 | 15854672 | 15854221 | ID=MsaT011970.1.exon1;Parent=MsaT011970.1 |
Chr3 | CDS | 15854221 | 15854672 | 15854221 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15856418 | 15857169 | 15856418 | ID=MsaT011970.1.exon2;Parent=MsaT011970.1 |
Chr3 | CDS | 15856418 | 15857169 | 15856418 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15857205 | 15859021 | 15857205 | ID=MsaT011970.1.exon3;Parent=MsaT011970.1 |
Chr3 | CDS | 15857205 | 15859021 | 15857205 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15859133 | 15859345 | 15859133 | ID=MsaT011970.1.exon4;Parent=MsaT011970.1 |
Chr3 | CDS | 15859133 | 15859345 | 15859133 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15859444 | 15859716 | 15859444 | ID=MsaT011970.1.exon5;Parent=MsaT011970.1 |
Chr3 | CDS | 15859444 | 15859716 | 15859444 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15859828 | 15859887 | 15859828 | ID=MsaT011970.1.exon6;Parent=MsaT011970.1 |
Chr3 | CDS | 15859828 | 15859887 | 15859828 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15860016 | 15860146 | 15860016 | ID=MsaT011970.1.exon7;Parent=MsaT011970.1 |
Chr3 | CDS | 15860016 | 15860146 | 15860016 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15860422 | 15860536 | 15860422 | ID=MsaT011970.1.exon8;Parent=MsaT011970.1 |
Chr3 | CDS | 15860422 | 15860536 | 15860422 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Chr3 | exon | 15860719 | 15860847 | 15860719 | ID=MsaT011970.1.exon9;Parent=MsaT011970.1 |
Chr3 | CDS | 15860719 | 15860847 | 15860719 | ID=cds.MsaT011970.1;Parent=MsaT011970.1 |
Gene Sequence |
Protein sequence |