AlfalfaGEDB | MsaG011971

M. sativa ssp. caerulea / MsaG011971

KEGG: -
GO: GO:0005575 GO:0005911 GO:0009506 GO:0030054 GO:0055044
PFAM: PF00176.26

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011971	PNY12069.1	76.832	505	57	5	1	445	704	1208	0.0	760

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011971	sp\|Q9M1I1\|FB304_ARATH	56.275	510	143	10	1	445	752	1246	7.03e-172	521

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011971	tr\|A0A2K3P9W1\|A0A2K3P9W1_TRIPR	76.832	505	57	5	1	445	704	1208	0.0	760

TFs/TRs:

Gene ID	Type	Classification
MsaG011971	TR	SNF2

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000093	MsaG011971	0.800370	2.487234e-48	3.391137e-46
MsaG000464	MsaG011971	0.809801	2.701701e-50	4.591693e-48
MsaG000514	MsaG011971	0.804377	3.753511e-49	5.608906e-47
MsaG001032	MsaG011971	0.819794	1.685694e-52	3.687146e-50
MsaG001001	MsaG011971	0.814890	2.115741e-51	4.078586e-49
MsaG001188	MsaG011971	0.861639	1.759226e-63	1.455834e-60
MsaG001496	MsaG011971	0.828314	1.723372e-54	4.754415e-52
MsaG003427	MsaG011971	0.817425	5.778128e-52	1.188295e-49
MsaG003596	MsaG011971	0.805857	1.845355e-49	2.854098e-47
MsaG003749	MsaG011971	0.816961	7.337907e-52	1.491148e-49
MsaG003754	MsaG011971	0.840275	1.773681e-57	6.983971e-55
MsaG003929	MsaG011971	0.841115	1.070790e-57	4.329433e-55
MsaG003961	MsaG011971	0.831118	3.606944e-55	1.077838e-52
MsaG004037	MsaG011971	0.813917	3.464640e-51	6.517654e-49
MsaG004137	MsaG011971	0.834235	6.127189e-56	2.005871e-53
MsaG004293	MsaG011971	0.876804	2.175335e-68	3.390482e-65
MsaG004446	MsaG011971	0.826502	4.662953e-54	1.222860e-51
MsaG004458	MsaG011971	0.807408	8.714184e-50	1.398106e-47
MsaG004507	MsaG011971	0.829393	9.470265e-55	2.693455e-52
MsaG004822	MsaG011971	0.800565	2.271654e-48	3.110863e-46
MsaG004973	MsaG011971	0.807759	7.345167e-50	1.188426e-47
MsaG005107	MsaG011971	0.807809	7.169070e-50	1.161341e-47
MsaG005577	MsaG011971	0.818083	4.111842e-52	8.600577e-50
MsaG005960	MsaG011971	0.817112	6.789960e-52	1.385188e-49
MsaG006133	MsaG011971	0.840011	2.076016e-57	8.107454e-55
MsaG006283	MsaG011971	0.841990	6.312193e-58	2.624208e-55
MsaG006625	MsaG011971	0.835584	2.812475e-56	9.586606e-54
MsaG006933	MsaG011971	0.807849	7.032076e-50	1.140231e-47
MsaG007000	MsaG011971	0.827527	2.659429e-54	7.176619e-52
MsaG007544	MsaG011971	0.848012	1.519830e-59	7.700325e-57
MsaG008036	MsaG011971	0.815566	1.499746e-51	2.940935e-49
MsaG008201	MsaG011971	0.815881	1.276524e-51	2.523320e-49
MsaG009059	MsaG011971	0.829322	9.854860e-55	2.797048e-52
MsaG009068	MsaG011971	0.831170	3.502139e-55	1.048089e-52
MsaG009265	MsaG011971	0.810313	2.098039e-50	3.610320e-48
MsaG009703	MsaG011971	0.849750	5.032683e-60	2.704564e-57
MsaG011320	MsaG011971	0.834575	5.039240e-56	1.666622e-53
MsaG011366	MsaG011971	0.838910	3.998742e-57	1.508730e-54
MsaG011889	MsaG011971	0.806286	1.500335e-49	2.344252e-47
MsaG011947	MsaG011971	0.859592	7.290874e-63	5.581541e-60
MsaG011971	MsaG012643	0.813647	3.969603e-51	7.417032e-49
MsaG011971	MsaG015214	0.810743	1.695350e-50	2.948090e-48
MsaG011971	MsaG015404	0.830257	5.848313e-55	1.704974e-52
MsaG011971	MsaG015496	0.811283	1.297256e-50	2.285843e-48
MsaG011971	MsaG016077	0.882114	2.907140e-70	5.792917e-67
MsaG011971	MsaG016293	0.895322	2.408005e-75	9.436037e-72
MsaG011971	MsaG016980	0.841582	8.083076e-58	3.316834e-55
MsaG011971	MsaG017298	0.814397	2.717211e-51	5.173548e-49
MsaG011971	MsaG017382	0.803608	5.414558e-49	7.947845e-47
MsaG011971	MsaG017436	0.809085	3.841056e-50	6.416274e-48
MsaG011971	MsaG017656	0.844216	1.622313e-58	7.244546e-56
MsaG011971	MsaG017773	0.866141	7.104177e-65	7.025263e-62
MsaG011971	MsaG017942	0.844489	1.370918e-58	6.176755e-56
MsaG011971	MsaG017984	0.843479	2.550319e-58	1.112062e-55
MsaG011971	MsaG018202	0.820411	1.219503e-52	2.711502e-50
MsaG011971	MsaG018496	0.893959	8.645836e-75	3.147266e-71
MsaG011971	MsaG018697	0.802109	1.100532e-48	1.560692e-46
MsaG011971	MsaG018874	0.831507	2.895802e-55	8.752109e-53
MsaG011971	MsaG018961	0.809543	3.067848e-50	5.181591e-48
MsaG011971	MsaG019115	0.800455	2.391251e-48	3.266518e-46
MsaG011971	MsaG019265	0.823941	1.868098e-53	4.565390e-51
MsaG011971	MsaG019760	0.841300	9.577123e-58	3.894995e-55
MsaG011971	MsaG019793	0.819719	1.753541e-52	3.827844e-50
MsaG011971	MsaG019911	0.801907	1.210299e-48	1.708570e-46
MsaG011971	MsaG020130	0.815722	1.385049e-51	2.726793e-49
MsaG011971	MsaG020527	0.823665	2.166456e-53	5.255369e-51
MsaG011971	MsaG022021	0.884254	4.815718e-71	1.063814e-67
MsaG011971	MsaG022065	0.878485	5.672361e-69	9.545072e-66
MsaG011971	MsaG022079	0.820835	9.755024e-53	2.193316e-50
MsaG011971	MsaG022403	0.806498	1.354236e-49	2.126599e-47
MsaG011971	MsaG022407	0.848854	8.911745e-60	4.644906e-57
MsaG011971	MsaG022486	0.847886	1.646270e-59	8.305675e-57
MsaG011971	MsaG023654	0.865487	1.140624e-64	1.098776e-61
MsaG011971	MsaG023790	0.817874	4.579993e-52	9.528556e-50
MsaG011971	MsaG026841	0.801100	1.768388e-48	2.451024e-46
MsaG011971	MsaG027249	0.806065	1.669167e-49	2.594350e-47
MsaG011971	MsaG027303	0.805300	2.412076e-49	3.682379e-47
MsaG011971	MsaG027750	0.831837	2.403830e-55	7.336027e-53
MsaG011971	MsaG028031	0.812542	6.918066e-51	1.257451e-48
MsaG011971	MsaG028080	0.835623	2.748622e-56	9.380263e-54
MsaG011971	MsaG028154	0.804978	2.814784e-49	4.265211e-47
MsaG011971	MsaG028189	0.811590	1.112957e-50	1.975960e-48
MsaG011971	MsaG028227	0.806791	1.175503e-49	1.858641e-47
MsaG011971	MsaG028246	0.856077	7.961644e-62	5.348417e-59
MsaG011971	MsaG028908	0.807303	9.169164e-50	1.467425e-47
MsaG011971	MsaG029217	0.852979	6.212109e-61	3.735010e-58
MsaG011971	MsaG029473	0.812752	6.228309e-51	1.137968e-48
MsaG011971	MsaG029486	0.821447	7.061425e-53	1.613673e-50
MsaG011971	MsaG029548	0.833600	8.817975e-56	2.833182e-53
MsaG011971	MsaG029653	0.801336	1.582885e-48	2.205751e-46
MsaG011971	MsaG029661	0.819235	2.258452e-52	4.867984e-50
MsaG011971	MsaG029987	0.822289	4.517943e-53	1.055887e-50
MsaG011971	MsaG030359	0.864082	3.128159e-64	2.849053e-61
MsaG011971	MsaG031573	0.836735	1.439200e-56	5.078452e-54
MsaG011971	MsaG032202	0.811633	1.089824e-50	1.936848e-48
MsaG011971	MsaG033298	0.859384	8.415045e-63	6.391591e-60
MsaG011971	MsaG034044	0.849047	7.882117e-60	4.135391e-57
MsaG011971	MsaG034132	0.822973	3.138545e-53	7.471852e-51
MsaG011971	MsaG035059	0.846800	3.259786e-59	1.585591e-56
MsaG011971	MsaG035203	0.843572	2.408770e-58	1.053459e-55
MsaG011971	MsaG035465	0.825441	8.311291e-54	2.116177e-51
MsaG011971	MsaG036337	0.825496	8.067182e-54	2.057171e-51
MsaG011971	MsaG036753	0.832261	1.890541e-55	5.840695e-53
MsaG011971	MsaG039196	0.839920	2.193272e-57	8.540705e-55
MsaG011971	MsaG039932	0.839216	3.335832e-57	1.270570e-54
MsaG011971	MsaG040425	0.833378	1.001301e-55	3.196118e-53
MsaG011971	MsaG040546	0.816515	9.227354e-52	1.853650e-49
MsaG011971	MsaG041112	0.819016	2.530966e-52	5.424137e-50
MsaG011971	MsaG041285	0.817409	5.824019e-52	1.197264e-49
MsaG011971	MsaG041916	0.812782	6.133241e-51	1.121442e-48
MsaG011971	MsaG042103	0.814931	2.072239e-51	3.998832e-49
MsaG011971	MsaG042398	0.832296	1.853915e-55	5.733127e-53
MsaG011971	MsaG043190	0.868988	8.779647e-66	9.752929e-63
MsaG011971	MsaG044227	0.824999	1.056037e-53	2.656344e-51
MsaG011971	MsaG044788	0.854276	2.644259e-61	1.664866e-58
MsaG011971	MsaG045105	0.890659	1.778041e-73	5.424277e-70
MsaG011971	MsaG045281	0.849148	7.391242e-60	3.891235e-57
MsaG011971	MsaG045654	0.804120	4.242738e-49	6.302384e-47
MsaG011971	MsaG046333	0.822098	5.002390e-53	1.163103e-50
MsaG011971	MsaG046530	0.912259	5.852404e-83	6.413142e-79
MsaG011971	MsaG046861	0.867179	3.332395e-65	3.437534e-62
MsaG011971	MsaG047067	0.826912	3.726008e-54	9.883478e-52
MsaG011971	MsaG047187	0.812130	8.504638e-51	1.529983e-48
MsaG011971	MsaG002467	0.804564	3.431421e-49	5.149933e-47
MsaG011971	MsaG002250	0.848463	1.142318e-59	5.874735e-57
MsaG011971	MsaG000676	0.847983	1.548320e-59	7.836767e-57
MsaG011971	MsaG001460	0.841298	9.591887e-58	3.900716e-55
MsaG011971	MsaG003009	0.879248	3.062529e-69	5.339357e-66
MsaG011971	MsaG002064	0.827952	2.104050e-54	5.746061e-52
MsaG011971	MsaG008206	0.809610	2.967288e-50	5.019832e-48
MsaG011971	MsaG008311	0.813844	3.594430e-51	6.749514e-49
MsaG011971	MsaG016780	0.803595	5.447539e-49	7.993921e-47
MsaG011971	MsaG013404	0.836534	1.618024e-56	5.675097e-54
MsaG011971	MsaG012092	0.830064	6.514662e-55	1.888838e-52
MsaG011971	MsaG014177	0.808586	4.906424e-50	8.097861e-48
MsaG011971	MsaG015710	0.801659	1.359958e-48	1.909019e-46
MsaG011971	MsaG019652	0.849768	4.975388e-60	2.675318e-57
MsaG011971	MsaG023010	0.813514	4.244595e-51	7.904635e-49
MsaG011971	MsaG027479	0.825810	6.800922e-54	1.749506e-51
MsaG011971	MsaG027608	0.837271	1.051265e-56	3.770292e-54
MsaG011971	MsaG027534	0.852565	8.145077e-61	4.825778e-58
MsaG011971	MsaG026750	0.810105	2.325388e-50	3.981230e-48
MsaG011971	MsaG033233	0.803449	5.837839e-49	8.537948e-47
MsaG011971	MsaG033253	0.886330	8.133745e-72	1.989109e-68
MsaG011971	MsaG031291	0.806501	1.352564e-49	2.124096e-47
MsaG011971	MsaG033515	0.812140	8.461309e-51	1.522577e-48
MsaG011971	MsaG032134	0.834875	4.238402e-56	1.414417e-53
MsaG011971	MsaG031454	0.861263	2.287585e-63	1.866207e-60
MsaG011971	MsaG031767	0.832137	2.028125e-55	6.243713e-53
MsaG011971	MsaG040848	0.813381	4.538394e-51	8.423585e-49
MsaG011971	MsaG039604	0.829681	8.068986e-55	2.313937e-52
MsaG011971	MsaG040777	0.811208	1.345932e-50	2.367274e-48
MsaG011971	MsaG036671	0.868190	1.585694e-65	1.704740e-62
MsaG011971	MsaG035247	0.810118	2.310765e-50	3.957403e-48
MsaG011971	MsaG043298	0.823691	2.136959e-53	5.187458e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011971	MtrunA17_Chr3g0083491	78.926	503	39	6	1	445	728	1221	0.0	756

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG011971	AT3G54460.2	56.275	510	143	10	1	445	455	949	1.34e-175	520
MsaG011971	AT3G54460.1	56.275	510	143	10	1	445	752	1246	7.15e-173	521

Find 93 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGTTGAATGAACAGGATAAT+TGG	0.223532	3:+15916647	MsaT011971.1:intron
CTACGAAATTTCCATTGTTT+TGG	0.236191	3:-15916044	None:intergenic
CTTGGGGTACAAACCACTTT+AGG	0.270323	3:-15916508	None:intergenic
CCAGAGGTTGAAAGCTTTGC+AGG	0.299028	3:+15916717	MsaT011971.1:CDS
TTCCTTCATGAAGAAGCTTA+TGG	0.308034	3:+15915747	MsaT011971.1:CDS
TCTGGCCGTGCCATTGAATC+AGG	0.311287	3:-15916476	None:intergenic
CAGCAAATTTGGTCGATCAT+TGG	0.322167	3:+15915374	MsaT011971.1:CDS
AGGCTTTCATGCTGTGTTGC+TGG	0.327727	3:+15916086	MsaT011971.1:CDS
CTAGATGTTGATTGCCAATC+AGG	0.333695	3:-15916673	None:intergenic
GGTAGTTGTTCCAGCAAATT+TGG	0.341778	3:+15915363	MsaT011971.1:CDS
CATCTGCGTACTCGCTTGCC+TGG	0.344647	3:+15915467	MsaT011971.1:CDS
CAATGATCGACCAAATTTGC+TGG	0.346850	3:-15915373	None:intergenic
TGTCAGGCCTGCTCAATTGC+AGG	0.356817	3:+15915417	MsaT011971.1:CDS
GTTAATGGTATCAAATATAC+TGG	0.364522	3:+15917050	MsaT011971.1:CDS
TAATGCTACTTGAACATTCC+TGG	0.371689	3:-15916837	None:intergenic
TTCGAGGCAGAGATGGAAAA+AGG	0.379826	3:+15915810	MsaT011971.1:CDS
GTTGCAAATGACTATTTCAT+TGG	0.380919	3:+15915636	MsaT011971.1:intron
ATATGAACTCATCTCTTCAT+TGG	0.383511	3:-15916743	None:intergenic
TTGTAACTCAATAAGATCTT+GGG	0.390486	3:-15916525	None:intergenic
TCAAATCGGTGGATACTAAC+TGG	0.393580	3:+15915664	MsaT011971.1:CDS
GTTGTAACTCAATAAGATCT+TGG	0.398290	3:-15916526	None:intergenic
GTTAGGAGTGTTTGATGTGT+TGG	0.401806	3:-15915691	None:intergenic
GTTGAATGAACAGGATAATT+GGG	0.403727	3:+15916648	MsaT011971.1:intron
CCTGCAAAGCTTTCAACCTC+TGG	0.408088	3:-15916717	None:intergenic
CCTTGTTGCTAGAATGCATT+GGG	0.411990	3:-15917082	None:intergenic
AGATGTGTAAGTTGGCTGTT+AGG	0.423057	3:-15915708	None:intergenic
TACAAATAGAAAAGCATGTC+AGG	0.427551	3:+15915401	MsaT011971.1:CDS
TCATTCCGCATCATCATTCC+AGG	0.431472	3:+15916819	MsaT011971.1:CDS
ACTTGAATCGTGCTGGAACT+TGG	0.432061	3:-15917244	None:intergenic
TATACATGTCATTGAACAAC+AGG	0.433121	3:+15916912	MsaT011971.1:CDS
TAGCTGTTTGAGTGCGGAGT+GGG	0.435475	3:+15915516	MsaT011971.1:CDS
GGTACAAACCACTTTAGGTT+AGG	0.437675	3:-15916503	None:intergenic
AGGATAATTGGGATCCTGAT+TGG	0.449928	3:+15916659	MsaT011971.1:intron
TTTCATTGGTTGCTTCAAAT+CGG	0.451100	3:+15915650	MsaT011971.1:CDS
AATTTGCTGGAACAACTACC+AGG	0.463905	3:-15915360	None:intergenic
CATGGGATGCTGGCGTGCTT+AGG	0.467040	3:+15915784	MsaT011971.1:CDS
TGTACACTTGGTCTTGTCAA+TGG	0.468799	3:-15916417	None:intergenic
TGTTCGGCGTAATATATTGA+TGG	0.471628	3:+15915980	MsaT011971.1:CDS
TTTATGTTTGTAACGATCAT+CGG	0.474244	3:+15915440	MsaT011971.1:CDS
GTCCATAAGCTTCTTCATGA+AGG	0.485696	3:-15915749	None:intergenic
ATGCATGATTAGTGCTAGAA+AGG	0.486577	3:+15915863	MsaT011971.1:CDS
ACACGCTGGAGAAGATATTC+AGG	0.491050	3:+15916124	MsaT011971.1:CDS
CAGAAAATCCTAACCTAAAG+TGG	0.491218	3:+15916495	MsaT011971.1:CDS
TGGCGTGCTTAGGCCATTCG+AGG	0.492502	3:+15915794	MsaT011971.1:CDS
ACCTTGTTGCTAGAATGCAT+TGG	0.503718	3:-15917083	None:intergenic
ATCTGCGTACTCGCTTGCCT+GGG	0.511105	3:+15915468	MsaT011971.1:CDS
GTAATATATTGATGGCTGAT+TGG	0.511643	3:+15915988	MsaT011971.1:CDS
GATGCAGAGTCCTGATTCAA+TGG	0.511929	3:+15916466	MsaT011971.1:CDS
TAATGAATTTCTTAGGTGCA+AGG	0.518160	3:+15916334	MsaT011971.1:intron
AGCAGTGCCTGCGCATAAGA+AGG	0.521163	3:-15916548	None:intergenic
GTCGACATGGCGTAATGAAA+GGG	0.524194	3:-15916370	None:intergenic
AAAACAACTTTCTTGATGCA+TGG	0.533458	3:-15915906	None:intergenic
GCATACAACTTGAATCGTGC+TGG	0.535414	3:-15917251	None:intergenic
TGTCGACATGGCGTAATGAA+AGG	0.537636	3:-15916371	None:intergenic
CACATCTACAACCATTGCTA+AGG	0.537808	3:+15915724	MsaT011971.1:CDS
ATGAGTTGGTACTCACTGTT+CGG	0.540678	3:+15915964	MsaT011971.1:CDS
CATTGGTTGCTTCAAATCGG+TGG	0.542676	3:+15915653	MsaT011971.1:CDS
TTAGGTGCAAGGAATGGTGC+CGG	0.554256	3:+15916345	MsaT011971.1:intron
TAGGCCATTCGAGGCAGAGA+TGG	0.555199	3:+15915803	MsaT011971.1:CDS
CAAGTTGTATGCACTTCTGA+TGG	0.555433	3:+15917262	MsaT011971.1:CDS
CCCAATGCATTCTAGCAACA+AGG	0.557176	3:+15917082	MsaT011971.1:CDS
TACATTTAGCTGTTTGAGTG+CGG	0.561184	3:+15915510	MsaT011971.1:CDS
GTTACAACCTTCTTATGCGC+AGG	0.562566	3:+15916541	MsaT011971.1:CDS
GTCTACTGAATCCAAAACAA+TGG	0.568925	3:+15916033	MsaT011971.1:CDS
ACATAAACCTGCAATTGAGC+AGG	0.571518	3:-15915424	None:intergenic
GATGACAACATCATAATCCC+AGG	0.571751	3:-15915485	None:intergenic
AGAAGATATTCAGGAAACAA+TGG	0.583877	3:+15916133	MsaT011971.1:CDS
TGTCAATGGAAACACAATCA+AGG	0.590521	3:-15916403	None:intergenic
TCATGAAGGAACCTTAGCAA+TGG	0.594391	3:-15915735	None:intergenic
ATGGCGTAATGAAAGGGAGC+CGG	0.600819	3:-15916364	None:intergenic
TGCTAGAAGTTACAATGAGT+TGG	0.601484	3:+15915950	MsaT011971.1:CDS
ATACATGTCAAGAGCAACCC+TGG	0.604114	3:+15915342	None:intergenic
CAGGCAAGCGAGTACGCAGA+TGG	0.606937	3:-15915466	None:intergenic
CAGAGGTTGAAAGCTTTGCA+GGG	0.610511	3:+15916718	MsaT011971.1:CDS
AATTTCTTAGGTGCAAGGAA+TGG	0.610878	3:+15916339	MsaT011971.1:intron
ACAACTTTCTTGATGCATGG+TGG	0.612301	3:-15915903	None:intergenic
CATATTAAAGTTACACACGC+TGG	0.624968	3:+15916110	MsaT011971.1:CDS
ACAGCTAGGATATGTACACT+TGG	0.625444	3:-15916429	None:intergenic
AGCTGTTTGAGTGCGGAGTG+GGG	0.626137	3:+15915517	MsaT011971.1:CDS
ATGGTTGTAGATGTGTAAGT+TGG	0.627824	3:-15915716	None:intergenic
AGTAGACTTTCCACATGCGA+AGG	0.629550	3:-15916017	None:intergenic
TTAGCTGTTTGAGTGCGGAG+TGG	0.638306	3:+15915515	MsaT011971.1:CDS
AGAGTCCTGATTCAATGGCA+CGG	0.648352	3:+15916471	MsaT011971.1:CDS
TCATACAAGTTATCACAGCT+AGG	0.648492	3:-15916443	None:intergenic
TGTAACTCAATAAGATCTTG+GGG	0.649776	3:-15916524	None:intergenic
TTGGAATGATCCTTCGCATG+TGG	0.651252	3:+15916007	MsaT011971.1:CDS
AAACAATGGAAATTTCGTAG+TGG	0.666896	3:+15916047	MsaT011971.1:CDS
GCGGAATGACTTGTGTGCAA+AGG	0.667601	3:-15916805	None:intergenic
AGGCACAACATATGTCGACA+TGG	0.683756	3:-15916383	None:intergenic
AAGTTGCATATCTCGTCCAG+AGG	0.698811	3:+15916701	MsaT011971.1:CDS
ATTTGCTGGAACAACTACCA+GGG	0.699718	3:-15915359	None:intergenic
ACATTCCTGGAATGATGATG+CGG	0.709579	3:-15916824	None:intergenic
AAGTAGCATTAGTACCAATG+TGG	0.718006	3:+15916849	MsaT011971.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	15915346	15917281	15915346	ID=MsaG011971
Chr3	mRNA	15915346	15917281	15915346	ID=MsaT011971.1;Parent=MsaG011971
Chr3	exon	15915346	15915544	15915346	ID=MsaT011971.1.exon1;Parent=MsaT011971.1
Chr3	CDS	15915346	15915544	15915346	ID=cds.MsaT011971.1;Parent=MsaT011971.1
Chr3	exon	15915637	15916159	15915637	ID=MsaT011971.1.exon2;Parent=MsaT011971.1
Chr3	CDS	15915637	15916159	15915637	ID=cds.MsaT011971.1;Parent=MsaT011971.1
Chr3	exon	15916349	15916586	15916349	ID=MsaT011971.1.exon3;Parent=MsaT011971.1
Chr3	CDS	15916349	15916586	15916349	ID=cds.MsaT011971.1;Parent=MsaT011971.1
Chr3	exon	15916661	15916933	15916661	ID=MsaT011971.1.exon4;Parent=MsaT011971.1
Chr3	CDS	15916661	15916933	15916661	ID=cds.MsaT011971.1;Parent=MsaT011971.1
Chr3	exon	15917044	15917103	15917044	ID=MsaT011971.1.exon5;Parent=MsaT011971.1
Chr3	CDS	15917044	15917103	15917044	ID=cds.MsaT011971.1;Parent=MsaT011971.1
Chr3	exon	15917231	15917281	15917231	ID=MsaT011971.1.exon6;Parent=MsaT011971.1
Chr3	CDS	15917231	15917281	15917231	ID=cds.MsaT011971.1;Parent=MsaT011971.1

Gene Sequence

>MsaT011971.1

ATGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAATTTGGTCGATCATTGGAAAGTACAAATAGAAAAGCATGTCAGGCCTGCTCAATTGCAGGTTTATGTTTGTAACGATCATCGGAAACCATCTGCGTACTCGCTTGCCTGGGATTATGATGTTGTCATCACTACATTTAGCTGTTTGAGTGCGGAGTGGGGCCCACTTGCAAATGACTATTTCATTGGTTGCTTCAAATCGGTGGATACTAACTGGAACACCAACACATCAAACACTCCTAACAGCCAACTTACACATCTACAACCATTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAAAAATCATGGGATGCTGGCGTGCTTAGGCCATTCGAGGCAGAGATGGAAAAAGGTTGGTCTCGTCTGTTGCGTTTACTTCAGAAATGCATGATTAGTGCTAGAAAGGCAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTACTAGATTTTAATGAGGAACATGCTAGAAGTTACAATGAGTTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCGCATGTGGAAAGTCTACTGAATCCAAAACAATGGAAATTTCGTAGTGGAGCTATAAAAAATGTAAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACACGCTGGAGAAGATATTCAGGAAACAATGGATATGTGCAAGGAATGGTGCCGGCTCCCTTTCATTACGCCATGTCGACATATGTTGTGCCTTGATTGTGTTTCCATTGACAAGACCAAGTGTACATATCCTAGCTGTGATAACTTGTATGAGATGCAGAGTCCTGATTCAATGGCACGGCCAGAAAATCCTAACCTAAAGTGGTTTGTACCCCAAGATCTTATTGAGTTACAACCTTCTTATGCGCAGGCACTGCTTTTAATTGAGAAATCAGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTTGCATATCTCGTCCAGAGGTTGAAAGCTTTGCAGGGAACCAATGAAGAGATGAGTTCATATACTGACAATAGCAATGTGATGTATATTGAAAATAGTTTTCCTTTGCACACAAGTCATTCCGCATCATCATTCCAGGAATGTTCAAGTAGCATTAGTACCAATGTGGTCCCTGAAAAAGTTTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAACAGTTGGCTGTTAATGGTATCAAATATACTGGAATGTATAACCCAATGCATTCTAGCAACAAGAAGAAGTCATTAGCCAAGTTCCAGCACGATTCAAGTTGTATGCACTTCTGA

Protein sequence

>MsaT011971.1

MSRATLVVVPANLVDHWKVQIEKHVRPAQLQVYVCNDHRKPSAYSLAWDYDVVITTFSCLSAEWGPLANDYFIGCFKSVDTNWNTNTSNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEKGWSRLLRLLQKCMISARKADLQSIPPCIKKVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHVESLLNPKQWKFRSGAIKNVRLSCCVAGHIKVTHAGEDIQETMDMCKEWCRLPFITPCRHMLCLDCVSIDKTKCTYPSCDNLYEMQSPDSMARPENPNLKWFVPQDLIELQPSYAQALLLIEKSDNWDPDWQSTSSSKVAYLVQRLKALQGTNEEMSSYTDNSNVMYIENSFPLHTSHSASSFQECSSSISTNVVPEKVLIFSQFLEHIHVIEQQLAVNGIKYTGMYNPMHSSNKKKSLAKFQHDSSCMHF*