AlfalfaGEDB | MsaG012079

M. sativa ssp. caerulea / MsaG012079

KEGG: K11644
GO: GO:0000118 GO:0000122 GO:0000785 GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0033993 GO:0035601 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0097305 GO:0098732 GO:1901564 GO:1901700 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02671.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012079	XP_003613438.2	92.381	105	8	0	47	151	28	132	1.81e-56	201

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012079	sp\|O04539\|SNL4_ARATH	74.490	98	24	1	55	151	7	104	3.28e-40	146

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012079	G7K6W4	92.381	105	8	0	47	151	28	132	8.65e-57	201

TFs/TRs:

Gene ID	Type	Classification
MsaG012079	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG005476	MsaG012079	0.818008	4.274336e-52	8.923650e-50
MsaG006048	MsaG012079	0.801240	1.656040e-48	2.302566e-46
MsaG011226	MsaG012079	0.801277	1.627418e-48	2.264681e-46
MsaG012079	MsaG029569	0.806575	1.304818e-49	2.052743e-47
MsaG012079	MsaG033921	0.832780	1.407688e-55	4.415266e-53
MsaG012079	MsaG035121	0.824767	1.196997e-53	2.991856e-51
MsaG012079	MsaG037822	0.839270	3.229403e-57	1.232141e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012079	MtrunA17_Chr5g0415031	92.381	105	8	0	47	151	28	132	1.67e-60	201
MsaG012079	MtrunA17_Chr8g0364231	65.217	115	39	1	38	151	17	131	2.88e-43	152
MsaG012079	MtrunA17_Chr6g0452001	67.010	97	32	0	55	151	56	152	7.16e-38	136
MsaG012079	MtrunA17_Chr6g0452021	64.583	96	32	2	56	151	37	130	3.67e-32	119
MsaG012079	MtrunA17_Chr1g0206781	54.762	84	38	0	56	139	5	88	2.85e-28	100
MsaG012079	MtrunA17_Chr8g0364021	50.562	89	44	0	52	140	34	122	2.41e-26	99.4
MsaG012079	MtrunA17_Chr1g0206771	58.667	75	31	0	55	129	9	83	1.99e-25	95.5
MsaG012079	MtrunA17_Chr1g0206771	50.000	66	33	0	65	130	98	163	2.77e-16	72.0
MsaG012079	MtrunA17_Chr1g0205811	54.430	79	36	0	62	140	14	92	5.80e-24	90.1
MsaG012079	MtrunA17_Chr3g0077861	54.321	81	36	1	52	131	80	160	9.94e-23	88.2
MsaG012079	MtrunA17_Chr3g0077861	39.583	96	54	2	56	151	2	93	1.45e-13	64.3
MsaG012079	MtrunA17_Chr3g0077911	54.321	81	36	1	52	131	80	160	2.11e-22	87.0
MsaG012079	MtrunA17_Chr3g0077911	40.625	96	53	2	56	151	2	93	1.38e-14	67.0
MsaG012079	MtrunA17_Chr3g0077891	50.000	84	41	1	52	134	89	172	8.57e-22	86.3
MsaG012079	MtrunA17_Chr3g0077891	48.052	77	39	1	56	131	2	78	7.44e-15	68.2
MsaG012079	MtrunA17_Chr1g0156171	97.297	37	1	0	95	131	20	56	1.10e-19	79.3
MsaG012079	MtrunA17_Chr4g0075861	50.602	83	39	1	52	134	164	244	1.64e-19	83.2
MsaG012079	MtrunA17_Chr4g0075861	44.186	86	45	1	61	146	11	93	1.40e-14	69.7
MsaG012079	MtrunA17_Chr4g0075861	40.000	95	55	1	50	144	79	171	1.79e-14	69.3
MsaG012079	MtrunA17_Chr4g0075971	50.602	83	39	1	52	134	164	244	1.82e-19	84.0
MsaG012079	MtrunA17_Chr4g0075971	44.186	86	45	1	61	146	11	93	1.22e-14	70.1
MsaG012079	MtrunA17_Chr4g0075971	38.947	95	56	1	50	144	79	171	1.02e-12	64.3
MsaG012079	MtrunA17_Chr7g0218911	54.545	66	30	0	66	131	2	67	2.35e-19	78.2
MsaG012079	MtrunA17_Chr1g0205861	45.238	84	45	1	55	137	8	91	5.19e-19	77.4
MsaG012079	MtrunA17_Chr3g0077941	50.649	77	37	1	55	130	91	167	5.37e-19	79.0
MsaG012079	MtrunA17_Chr3g0077941	46.753	77	40	1	56	131	2	78	1.83e-14	67.0
MsaG012079	MtrunA17_Chr3g0077881	48.750	80	40	1	52	130	89	168	1.06e-17	75.5
MsaG012079	MtrunA17_Chr3g0077881	48.052	77	39	1	56	131	2	78	5.90e-15	68.2
MsaG012079	MtrunA17_Chr1g0205821	46.835	79	42	0	61	139	12	90	3.54e-17	73.9
MsaG012079	MtrunA17_Chr1g0205821	47.143	70	37	0	63	132	100	169	1.83e-16	72.4
MsaG012079	MtrunA17_Chr1g0209201	44.000	100	50	3	52	146	6	104	7.50e-17	72.4
MsaG012079	MtrunA17_Chr2g0328701	46.753	77	38	1	61	137	28	101	9.95e-16	68.9
MsaG012079	MtrunA17_Chr1g0205801	40.260	77	46	0	61	137	11	87	1.36e-15	68.2
MsaG012079	MtrunA17_Chr1g0205831	46.377	69	37	0	63	131	3	71	1.35e-14	67.4
MsaG012079	MtrunA17_Chr1g0205831	40.000	75	45	0	65	139	76	150	9.07e-13	62.4
MsaG012079	MtrunA17_Chr3g0077811	45.455	77	41	1	56	131	7	83	3.91e-14	64.7
MsaG012079	MtrunA17_Chr7g0256011	41.667	72	42	0	59	130	13	84	1.41e-13	63.5
MsaG012079	MtrunA17_Chr7g0218891	45.455	66	36	0	76	141	201	266	1.59e-12	63.2
MsaG012079	MtrunA17_Chr7g0218891	41.935	62	36	0	76	137	115	176	3.68e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012079	AT1G70060.2	74.490	98	24	1	55	151	7	104	3.34e-41	146
MsaG012079	AT1G70060.1	74.490	98	24	1	55	151	7	104	3.34e-41	146
MsaG012079	AT1G24190.3	71.134	97	28	0	55	151	7	103	5.70e-40	142
MsaG012079	AT1G24190.2	71.134	97	28	0	55	151	7	103	6.28e-40	142
MsaG012079	AT1G24190.1	71.134	97	28	0	55	151	7	103	6.72e-40	142
MsaG012079	AT3G01320.1	65.657	99	33	1	53	151	48	145	2.73e-36	132
MsaG012079	AT3G01320.2	65.657	99	33	1	53	151	48	145	2.92e-36	132
MsaG012079	AT5G15020.1	64.583	96	32	1	56	151	46	139	1.21e-33	124
MsaG012079	AT5G15020.2	64.583	96	32	1	56	151	46	139	1.37e-33	124
MsaG012079	AT1G59890.2	57.265	117	44	2	38	150	17	131	1.74e-33	124
MsaG012079	AT1G59890.4	57.265	117	44	2	38	150	17	131	1.77e-33	124
MsaG012079	AT1G59890.3	57.265	117	44	2	38	150	17	131	1.83e-33	124
MsaG012079	AT1G59890.1	57.265	117	44	2	38	150	17	131	1.86e-33	124
MsaG012079	AT1G10450.2	62.637	91	32	1	60	150	31	119	7.01e-32	119
MsaG012079	AT1G10450.1	62.637	91	32	1	60	150	31	119	7.01e-32	119
MsaG012079	AT1G10450.3	62.637	91	32	1	60	150	82	170	7.53e-32	119
MsaG012079	AT5G15025.1	49.107	112	53	2	27	136	12	121	3.48e-28	101
MsaG012079	AT1G70030.3	53.191	94	43	1	56	149	16	108	1.72e-25	94.4
MsaG012079	AT1G24200.1	49.485	97	46	1	55	151	7	100	2.47e-25	96.3
MsaG012079	AT1G70030.2	53.191	94	43	1	56	149	16	108	6.81e-25	93.2
MsaG012079	AT1G70030.1	53.191	94	43	1	56	149	5	97	1.18e-24	93.2
MsaG012079	AT4G12020.10	55.556	81	35	1	58	138	304	383	6.50e-22	91.3
MsaG012079	AT4G12020.3	55.556	81	35	1	58	138	304	383	6.50e-22	91.3
MsaG012079	AT4G12020.7	55.556	81	35	1	58	138	304	383	6.61e-22	91.3
MsaG012079	AT4G12020.4	55.556	81	35	1	58	138	304	383	6.63e-22	91.3
MsaG012079	AT4G12020.2	55.556	81	35	1	58	138	304	383	6.63e-22	91.3
MsaG012079	AT4G12020.1	55.556	81	35	1	58	138	304	383	6.68e-22	91.3
MsaG012079	AT4G12020.9	55.556	81	35	1	58	138	304	383	6.68e-22	91.3
MsaG012079	AT4G12020.11	55.556	81	35	1	58	138	304	383	6.85e-22	91.3
MsaG012079	AT4G12020.5	55.556	81	35	1	58	138	237	316	7.08e-22	91.3
MsaG012079	AT4G12020.6	55.556	81	35	1	58	138	304	383	7.14e-22	91.3
MsaG012079	AT4G12020.8	55.556	81	35	1	58	138	304	383	7.14e-22	91.3
MsaG012079	AT1G27220.1	50.000	74	37	0	57	130	9	82	1.18e-20	83.6
MsaG012079	AT1G27250.1	49.315	73	37	0	57	129	16	88	9.50e-20	80.1
MsaG012079	AT5G35610.1	43.925	107	49	2	55	150	3	109	4.56e-18	76.3
MsaG012079	AT5G15040.1	43.056	72	41	0	65	136	6	77	8.25e-15	65.9
MsaG012079	AT5G15040.3	43.056	72	41	0	65	136	6	77	8.25e-15	65.9
MsaG012079	AT5G15040.2	43.056	72	41	0	65	136	6	77	8.25e-15	65.9
MsaG012079	AT1G24250.1	36.283	113	60	4	23	123	69	181	1.67e-13	65.9
MsaG012079	AT1G24230.1	37.500	88	54	1	57	144	81	167	4.21e-13	64.7
MsaG012079	AT1G24230.1	41.176	68	39	1	58	124	10	77	1.32e-11	60.8
MsaG012079	AT1G23810.1	43.077	65	37	0	59	123	106	170	1.02e-12	63.9
MsaG012079	AT1G24210.1	40.278	72	43	0	53	124	5	76	8.63e-12	59.7
MsaG012079	AT1G27260.1	38.158	76	39	2	61	132	2	73	5.73e-11	58.9
MsaG012079	AT1G27280.1	35.443	79	51	0	59	137	78	156	6.03e-11	58.9

Find 27 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATGTGCCTTCTTATTTGA+AGG	0.371628	3:+18661798	MsaT012079.1:CDS
ATCTCGATTCGGCGGTTGCC+CGG	0.418989	3:-18662548	None:intergenic
TAAGATCAAGTTTCAAGGTC+CGG	0.429714	3:+18662529	MsaT012079.1:intron
TTAATCAAACCTGAGATTGT+TGG	0.433476	3:-18662400	None:intergenic
GCTGATGGAGCTGTGGACTT+TGG	0.439632	3:+18661770	None:intergenic
TTCTCTAAGATCAAGTTTCA+AGG	0.445375	3:+18662524	MsaT012079.1:intron
AGGGTAATCTCATGGCCCTT+TGG	0.454966	3:-18662875	None:intergenic
GGTCATAGAGACTTGATCTT+GGG	0.467943	3:+18662836	MsaT012079.1:CDS
CTCATGGCCCTTTGGCAGAA+AGG	0.476655	3:-18662867	None:intergenic
ATTAACGTGCCAACAATCTC+AGG	0.477289	3:+18662391	MsaT012079.1:CDS
AACAATACCTTCAAATAAGA+AGG	0.490879	3:-18661805	None:intergenic
AAGATCAAGTTTCAAGGTCC+GGG	0.505302	3:+18662530	MsaT012079.1:intron
AGGTCATAGAGACTTGATCT+TGG	0.513611	3:+18662835	MsaT012079.1:CDS
TTTAACACCTTTCTGCCAAA+GGG	0.527079	3:+18662860	MsaT012079.1:CDS
AGACAAGAAGGAAAAGTATG+AGG	0.539440	3:+18662633	MsaT012079.1:CDS
ATTTAACACCTTTCTGCCAA+AGG	0.543196	3:+18662859	MsaT012079.1:CDS
TTGCTCATCCTCAGACGAAA+GGG	0.552798	3:-18662894	None:intergenic
TGAGATTACCCTTTCGTCTG+AGG	0.555293	3:+18662886	MsaT012079.1:CDS
AGCATATCTCAAGGTGGTCA+AGG	0.560863	3:+18662600	MsaT012079.1:CDS
TTCAGGGATTGATTCTAATG+TGG	0.588863	3:+18662330	MsaT012079.1:intron
CAGACGAAAGGGTAATCTCA+TGG	0.592774	3:-18662883	None:intergenic
GTTGCTCATCCTCAGACGAA+AGG	0.601293	3:-18662895	None:intergenic
TGATGTTGTAGCATATCTCA+AGG	0.610761	3:+18662591	MsaT012079.1:CDS
GGGCAACCGCCGAATCGAGA+TGG	0.613865	3:+18662550	MsaT012079.1:CDS
ATTTGTAGAGTTGATACTGA+TGG	0.633224	3:+18662782	MsaT012079.1:intron
TGGTGTCATTGAAAGAGTGA+AGG	0.685356	3:+18662802	MsaT012079.1:CDS
TGTTGTAGCATATCTCAAGG+TGG	0.757265	3:+18662594	MsaT012079.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	18661774	18662961	18661774	ID=MsaG012079
Chr3	mRNA	18661774	18662961	18661774	ID=MsaT012079.1;Parent=MsaG012079
Chr3	exon	18661774	18661819	18661774	ID=MsaT012079.1.exon1;Parent=MsaT012079.1
Chr3	CDS	18661774	18661819	18661774	ID=cds.MsaT012079.1;Parent=MsaT012079.1
Chr3	exon	18662335	18662412	18662335	ID=MsaT012079.1.exon2;Parent=MsaT012079.1
Chr3	CDS	18662335	18662412	18662335	ID=cds.MsaT012079.1;Parent=MsaT012079.1
Chr3	exon	18662533	18662692	18662533	ID=MsaT012079.1.exon3;Parent=MsaT012079.1
Chr3	CDS	18662533	18662692	18662533	ID=cds.MsaT012079.1;Parent=MsaT012079.1
Chr3	exon	18662790	18662961	18662790	ID=MsaT012079.1.exon4;Parent=MsaT012079.1
Chr3	CDS	18662790	18662961	18662790	ID=cds.MsaT012079.1;Parent=MsaT012079.1

Gene Sequence

>MsaT012079.1

ATGGAGCTGTGGACTTTGGCTATTGAATGTGCCTTCTTATTTGAAGGGATTGATTCTAATGTGGAGTGTGAGAATCTAAATTGTTCAATGAATTGTGAAGACATTAACGTGCCAACAATCTCAGATCAAGTTTCAAGGTCCGGGCAACCGCCGAATCGAGATGGTCAAAAACTGACTACTAATGATGTTGTAGCATATCTCAAGGTGGTCAAGGATATTTTTCAAGACAAGAAGGAAAAGTATGAGGACTTTTTGGAGGTTATGAAAGATTTTAGAGCACAAAGAGTTGATACTGATGGTGTCATTGAAAGAGTGAAGGAACATTTTAGAGGTCATAGAGACTTGATCTTGGGATTTAACACCTTTCTGCCAAAGGGCCATGAGATTACCCTTTCGTCTGAGGATGAGCAACCTCAACCAAAAAAGAAGGTTGAATTTTATGAAGCTATGAGTTAG

Protein sequence

>MsaT012079.1

MELWTLAIECAFLFEGIDSNVECENLNCSMNCEDINVPTISDQVSRSGQPPNRDGQKLTTNDVVAYLKVVKDIFQDKKEKYEDFLEVMKDFRAQRVDTDGVIERVKEHFRGHRDLILGFNTFLPKGHEITLSSEDEQPQPKKKVEFYEAMS*