AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG012118

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012118 MtrunA17_Chr3g0080861 96.367 523 16 1 1 523 1 520 0.0 1045
MsaG012118 MtrunA17_Chr8g0354661 55.370 540 207 8 1 519 2 528 0.0 551
MsaG012118 MtrunA17_Chr3g0099131 78.261 115 25 0 37 151 41 155 2.42e-60 207
MsaG012118 MtrunA17_Chr2g0322521 63.448 145 53 0 13 157 5 149 2.61e-59 201
MsaG012118 MtrunA17_Chr1g0154031 54.491 167 69 2 37 203 76 235 3.39e-55 191
MsaG012118 MtrunA17_Chr1g0192411 59.664 119 48 0 35 153 10 128 6.26e-46 166
MsaG012118 MtrunA17_Chr2g0281071 58.974 117 41 1 24 140 7 116 3.63e-45 162
MsaG012118 MtrunA17_Chr5g0410961 61.321 106 41 0 35 140 10 115 4.03e-45 162
MsaG012118 MtrunA17_Chr1g0203411 64.220 109 39 0 37 145 12 120 6.99e-45 159
MsaG012118 MtrunA17_Chr4g0048511 58.120 117 42 1 24 140 7 116 1.73e-44 160
MsaG012118 MtrunA17_Chr5g0395281 62.500 104 39 0 37 140 12 115 6.37e-44 157
MsaG012118 MtrunA17_Chr4g0039971 61.538 104 40 0 37 140 13 116 7.74e-43 155
MsaG012118 MtrunA17_Chr2g0323411 60.000 110 43 1 37 145 12 121 8.75e-43 155
MsaG012118 MtrunA17_Chr1g0167691 57.265 117 42 1 24 140 7 115 1.02e-42 152
MsaG012118 MtrunA17_Chr1g0194301 55.556 126 54 1 19 142 13 138 1.44e-42 153
MsaG012118 MtrunA17_Chr1g0209661 57.547 106 45 0 37 142 27 132 1.84e-42 154
MsaG012118 MtrunA17_Chr8g0349261 61.905 105 39 1 37 140 13 117 8.71e-42 151
MsaG012118 MtrunA17_Chr7g0228231 58.252 103 43 0 37 139 14 116 1.00e-41 148
MsaG012118 MtrunA17_Chr3g0115821 59.615 104 42 0 37 140 12 115 1.54e-41 152
MsaG012118 MtrunA17_Chr3g0099141 75.904 83 20 0 37 119 40 122 1.61e-41 145
MsaG012118 MtrunA17_Chr1g0186061 57.983 119 49 1 25 142 7 125 1.87e-41 149
MsaG012118 MtrunA17_Chr8g0346561 60.377 106 42 0 35 140 10 115 2.20e-41 150
MsaG012118 MtrunA17_Chr4g0068061 48.227 141 65 1 35 167 10 150 2.30e-41 151
MsaG012118 MtrunA17_Chr1g0168661 55.462 119 49 1 28 142 8 126 2.32e-41 149
MsaG012118 MtrunA17_Chr1g0187761 60.577 104 41 0 37 140 12 115 3.64e-41 149
MsaG012118 MtrunA17_Chr7g0275911 61.386 101 39 0 35 135 10 110 4.37e-41 148
MsaG012118 MtrunA17_Chr7g0217221 59.434 106 43 0 37 142 12 117 5.13e-41 149
MsaG012118 MtrunA17_Chr1g0194291 59.434 106 43 0 37 142 21 126 8.19e-41 148
MsaG012118 MtrunA17_Chr5g0435101 57.692 104 44 0 37 140 11 114 8.36e-41 146
MsaG012118 MtrunA17_Chr7g0217741 59.434 106 43 0 35 140 10 115 9.25e-41 149
MsaG012118 MtrunA17_Chr6g0450101 57.282 103 44 0 37 139 14 116 9.85e-41 145
MsaG012118 MtrunA17_Chr1g0193371 59.434 106 43 0 37 142 12 117 1.13e-40 150
MsaG012118 MtrunA17_Chr1g0167661 55.556 117 44 1 24 140 7 115 1.43e-40 147
MsaG012118 MtrunA17_Chr4g0022931 58.654 104 43 0 37 140 13 116 1.71e-40 147
MsaG012118 MtrunA17_Chr7g0261281 59.615 104 42 0 37 140 12 115 1.75e-40 147
MsaG012118 MtrunA17_Chr4g0037141 60.784 102 40 0 39 140 14 115 2.18e-40 147
MsaG012118 MtrunA17_Chr4g0070641 61.616 99 38 0 37 135 12 110 2.22e-40 143
MsaG012118 MtrunA17_Chr3g0131121 61.765 102 39 0 39 140 14 115 2.79e-40 147
MsaG012118 MtrunA17_Chr4g0070611 61.616 99 38 0 37 135 12 110 4.55e-40 147
MsaG012118 MtrunA17_Chr4g0060721 59.615 104 42 0 37 140 13 116 4.91e-40 147
MsaG012118 MtrunA17_Chr6g0453211 62.626 99 37 0 37 135 12 110 5.69e-40 147
MsaG012118 MtrunA17_Chr4g0042671 59.434 106 43 0 35 140 10 115 7.51e-40 149
MsaG012118 MtrunA17_Chr4g0022911 56.731 104 45 0 37 140 13 116 8.11e-40 146
MsaG012118 MtrunA17_Chr3g0121241 57.547 106 45 0 35 140 40 145 8.22e-40 146
MsaG012118 MtrunA17_Chr6g0453471 59.434 106 43 0 35 140 10 115 8.79e-40 147
MsaG012118 MtrunA17_Chr2g0309911 56.731 104 45 0 37 140 11 114 9.12e-40 146
MsaG012118 MtrunA17_Chr4g0022901 57.692 104 44 0 37 140 13 116 9.54e-40 145
MsaG012118 MtrunA17_Chr7g0274581 53.846 104 48 0 37 140 12 115 1.31e-39 142
MsaG012118 MtrunA17_Chr8g0387421 58.491 106 44 0 37 142 12 117 1.96e-39 145
MsaG012118 MtrunA17_Chr1g0151941 51.639 122 52 2 37 157 12 127 2.14e-39 144
MsaG012118 MtrunA17_Chr7g0270891 57.547 106 45 0 37 142 12 117 2.23e-39 147
MsaG012118 MtrunA17_Chr2g0328771 55.660 106 47 0 37 142 20 125 2.54e-39 145
MsaG012118 MtrunA17_Chr3g0110351 55.556 108 48 0 35 142 10 117 3.20e-39 145
MsaG012118 MtrunA17_Chr7g0254411 58.491 106 44 0 35 140 10 115 3.58e-39 145
MsaG012118 MtrunA17_Chr1g0193801 57.547 106 45 0 37 142 12 117 3.75e-39 147
MsaG012118 MtrunA17_Chr8g0385321 57.843 102 43 0 39 140 14 115 4.44e-39 144
MsaG012118 MtrunA17_Chr7g0228891 46.012 163 85 2 35 197 10 169 6.71e-39 143
MsaG012118 MtrunA17_Chr5g0434571 55.556 108 48 0 35 142 46 153 7.12e-39 145
MsaG012118 MtrunA17_Chr2g0311221 58.586 99 41 0 37 135 14 112 1.25e-38 144
MsaG012118 MtrunA17_Chr4g0057031 56.731 104 45 0 37 140 12 115 2.37e-38 141
MsaG012118 MtrunA17_Chr3g0092401 55.660 106 47 0 37 142 13 118 2.61e-38 142
MsaG012118 MtrunA17_Chr2g0323351 53.448 116 46 1 24 139 7 114 4.48e-38 140
MsaG012118 MtrunA17_Chr1g0211161 56.731 104 45 0 37 140 13 116 4.55e-38 139
MsaG012118 MtrunA17_Chr3g0117091 57.692 104 44 0 37 140 12 115 4.81e-38 142
MsaG012118 MtrunA17_Chr2g0330041 55.769 104 46 0 37 140 12 115 5.10e-38 144
MsaG012118 MtrunA17_Chr8g0342541 55.769 104 46 0 37 140 12 115 7.63e-38 142
MsaG012118 MtrunA17_Chr4g0032401 55.660 106 47 0 37 142 17 122 1.57e-37 140
MsaG012118 MtrunA17_Chr4g0058631 56.731 104 45 0 37 140 12 115 1.61e-37 141
MsaG012118 MtrunA17_Chr8g0342521 56.731 104 45 0 37 140 12 115 2.11e-37 141
MsaG012118 MtrunA17_Chr3g0088461 56.731 104 45 0 37 140 22 125 2.75e-37 140
MsaG012118 MtrunA17_Chr6g0452271 57.692 104 44 0 37 140 12 115 2.81e-37 140
MsaG012118 MtrunA17_Chr4g0044421 55.882 102 45 0 39 140 14 115 3.01e-37 136
MsaG012118 MtrunA17_Chr7g0271241 60.204 98 39 0 37 134 12 109 3.05e-37 141
MsaG012118 MtrunA17_Chr5g0440781 38.922 167 95 3 38 203 13 173 3.61e-37 135
MsaG012118 MtrunA17_Chr4g0022891 55.882 102 45 0 37 138 12 113 4.14e-37 137
MsaG012118 MtrunA17_Chr5g0397231 58.586 99 41 0 37 135 12 110 4.62e-37 140
MsaG012118 MtrunA17_Chr1g0194951 56.604 106 46 0 35 140 10 115 6.24e-37 140
MsaG012118 MtrunA17_Chr5g0440761 38.922 167 95 3 38 203 13 173 6.80e-37 137
MsaG012118 MtrunA17_Chr1g0152011 57.143 105 44 1 37 140 12 116 6.86e-37 139
MsaG012118 MtrunA17_Chr4g0028311 54.630 108 48 1 37 143 12 119 6.94e-37 139
MsaG012118 MtrunA17_Chr5g0441141 38.922 167 95 3 38 203 13 173 1.07e-36 137
MsaG012118 MtrunA17_Chr7g0264641 48.000 125 61 2 37 157 12 136 1.25e-36 137
MsaG012118 MtrunA17_Chr5g0400821 56.190 105 45 1 37 140 12 116 1.80e-36 137
MsaG012118 MtrunA17_Chr3g0103281 55.769 104 46 0 37 140 12 115 3.70e-36 137
MsaG012118 MtrunA17_Chr5g0441131 47.934 121 62 1 35 154 7 127 6.47e-36 132
MsaG012118 MtrunA17_Chr2g0327351 57.000 100 42 1 37 135 12 111 7.71e-36 136
MsaG012118 MtrunA17_Chr1g0180391 50.000 124 60 1 37 158 19 142 8.08e-36 133
MsaG012118 MtrunA17_Chr5g0417821 54.808 104 47 0 37 140 7 110 8.67e-36 135
MsaG012118 MtrunA17_Chr8g0343831 55.882 102 45 0 39 140 10 111 1.33e-35 133
MsaG012118 MtrunA17_Chr4g0054391 58.586 99 40 1 37 134 12 110 2.53e-35 134
MsaG012118 MtrunA17_Chr3g0135311 54.286 105 47 1 37 140 12 116 4.03e-35 134
MsaG012118 MtrunA17_Chr6g0487491 49.573 117 50 2 37 144 12 128 5.42e-35 132
MsaG012118 MtrunA17_Chr8g0334881 49.533 107 53 1 37 142 10 116 6.21e-35 133
MsaG012118 MtrunA17_Chr4g0055981 55.556 99 44 0 37 135 55 153 7.40e-35 130
MsaG012118 MtrunA17_Chr2g0293911 56.311 103 45 0 37 139 24 126 8.25e-35 133
MsaG012118 MtrunA17_Chr4g0022881 51.961 102 49 0 38 139 13 114 9.01e-35 130
MsaG012118 MtrunA17_Chr7g0269831 57.547 106 45 0 35 140 10 115 1.00e-34 134
MsaG012118 MtrunA17_Chr2g0327821 54.808 104 47 0 37 140 6 109 1.34e-34 130
MsaG012118 MtrunA17_Chr8g0342481 53.333 105 48 1 37 140 12 116 1.38e-34 134
MsaG012118 MtrunA17_Chr4g0068921 55.340 103 46 0 37 139 24 126 1.53e-34 129
MsaG012118 MtrunA17_Chr4g0072751 58.000 100 41 1 37 135 12 111 1.77e-34 133
MsaG012118 MtrunA17_Chr1g0203441 55.340 103 46 0 38 140 14 116 1.93e-34 130
MsaG012118 MtrunA17_Chr4g0013361 49.533 107 53 1 37 142 10 116 3.55e-34 130
MsaG012118 MtrunA17_Chr7g0220341 45.238 126 67 1 17 140 5 130 1.02e-33 129
MsaG012118 MtrunA17_Chr5g0434831 51.923 104 50 0 37 140 7 110 2.73e-33 125
MsaG012118 MtrunA17_Chr8g0360111 55.340 103 44 1 33 135 23 123 4.85e-33 126
MsaG012118 MtrunA17_Chr4g0030881 51.327 113 48 1 36 141 6 118 5.06e-33 126
MsaG012118 MtrunA17_Chr5g0434931 47.414 116 59 1 27 140 23 138 6.82e-33 127
MsaG012118 MtrunA17_Chr5g0434911 41.860 129 67 1 12 140 4 124 7.35e-32 124
MsaG012118 MtrunA17_Chr6g0470971 51.456 103 50 0 38 140 15 117 2.13e-31 122
MsaG012118 MtrunA17_Chr7g0240821 47.748 111 53 1 33 143 2 107 3.73e-31 120
MsaG012118 MtrunA17_Chr5g0434841 50.000 104 52 0 37 140 20 123 7.01e-31 122
MsaG012118 MtrunA17_Chr7g0247131 65.333 75 26 0 69 143 10 84 1.76e-30 119
MsaG012118 MtrunA17_Chr7g0228991 49.038 104 53 0 37 140 29 132 3.14e-30 119
MsaG012118 MtrunA17_Chr5g0395221 56.098 82 36 0 32 113 7 88 1.21e-27 106
MsaG012118 MtrunA17_Chr5g0429661 44.628 121 63 3 22 141 105 222 1.71e-27 113
MsaG012118 MtrunA17_Chr4g0042611 55.696 79 35 0 35 113 10 88 2.56e-27 105
MsaG012118 MtrunA17_Chr3g0133601 47.170 106 55 1 39 144 37 141 5.44e-27 108
MsaG012118 MtrunA17_Chr2g0294811 54.430 79 36 0 35 113 10 88 6.02e-27 105
MsaG012118 MtrunA17_Chr4g0008551 48.148 108 53 2 39 145 38 143 7.12e-27 111
MsaG012118 MtrunA17_Chr2g0323321 47.872 94 41 1 21 114 3 88 4.12e-26 102
MsaG012118 MtrunA17_Chr5g0401731 49.020 102 51 1 39 140 15 115 5.58e-26 108
MsaG012118 MtrunA17_Chr3g0117511 40.157 127 73 2 31 155 175 300 9.39e-26 110
MsaG012118 MtrunA17_Chr4g0058991 46.789 109 50 3 36 141 206 309 3.17e-25 108
MsaG012118 MtrunA17_Chr6g0453751 51.485 101 38 3 27 118 12 110 4.38e-25 100
MsaG012118 MtrunA17_Chr6g0454921 47.059 102 53 1 39 140 15 115 6.89e-25 102
MsaG012118 MtrunA17_Chr3g0139671 46.154 104 55 1 37 140 83 185 9.14e-25 108
MsaG012118 MtrunA17_Chr7g0228531 42.520 127 66 4 17 143 202 321 1.60e-24 106
MsaG012118 MtrunA17_Chr8g0342531 52.564 78 37 0 37 114 12 89 1.65e-24 100
MsaG012118 MtrunA17_Chr4g0053431 44.118 102 56 1 39 140 5 105 2.17e-24 102
MsaG012118 MtrunA17_Chr7g0238631 48.077 104 53 1 37 140 111 213 6.07e-24 105
MsaG012118 MtrunA17_Chr5g0437321 43.750 128 69 2 23 150 5 129 8.03e-24 101
MsaG012118 MtrunA17_Chr5g0425591 48.889 90 45 1 30 118 2 91 8.16e-24 95.5
MsaG012118 MtrunA17_Chr6g0460661 42.056 107 61 1 39 145 16 121 9.26e-24 97.8
MsaG012118 MtrunA17_Chr1g0157731 43.269 104 58 1 37 140 89 191 9.66e-24 105
MsaG012118 MtrunA17_Chr8g0342511 53.947 76 35 0 37 112 12 87 2.35e-23 94.4
MsaG012118 MtrunA17_Chr6g0480581 42.727 110 62 1 39 148 4 112 6.89e-23 97.8
MsaG012118 MtrunA17_Chr5g0434901 58.824 68 28 0 71 138 7 74 1.42e-22 93.2
MsaG012118 MtrunA17_Chr7g0254261 43.636 110 61 1 39 148 89 197 1.98e-22 99.0
MsaG012118 MtrunA17_Chr5g0417621 44.762 105 55 2 39 142 134 236 5.15e-22 98.6
MsaG012118 MtrunA17_Chr8g0342461 50.000 78 38 1 39 115 14 91 5.25e-22 92.0
MsaG012118 MtrunA17_Chr4g0042501 42.593 108 59 2 36 142 102 207 7.34e-22 98.2
MsaG012118 MtrunA17_Chr7g0229101 54.286 70 32 0 69 138 4 73 1.30e-21 93.2
MsaG012118 MtrunA17_Chr5g0397841 45.918 98 52 1 37 134 108 204 4.68e-21 96.3
MsaG012118 MtrunA17_Chr8g0342471 49.367 79 39 1 37 114 12 90 4.82e-21 89.4
MsaG012118 MtrunA17_Chr7g0229131 52.113 71 34 0 69 139 4 74 6.47e-21 90.1
MsaG012118 MtrunA17_Chr7g0228401 48.936 94 46 2 50 143 290 381 1.85e-20 94.4
MsaG012118 MtrunA17_Chr7g0228481 38.583 127 71 4 17 143 202 321 3.41e-20 93.2
MsaG012118 MtrunA17_Chr7g0238651 38.835 103 61 1 42 142 10 112 4.10e-20 92.0
MsaG012118 MtrunA17_Chr3g0125801 43.810 105 56 2 39 142 16 118 1.55e-19 89.0
MsaG012118 MtrunA17_Chr3g0093811 50.000 72 36 0 69 140 14 85 4.25e-19 87.4
MsaG012118 MtrunA17_Chr6g0460671 40.367 109 60 2 39 145 99 204 7.13e-19 88.2
MsaG012118 MtrunA17_Chr1g0177901 44.828 87 47 1 49 135 4 89 8.42e-18 82.4
MsaG012118 MtrunA17_Chr1g0193901 50.575 87 41 2 37 121 11 97 2.52e-17 77.8
MsaG012118 MtrunA17_Chr1g0193891 50.575 87 41 2 37 121 11 97 2.52e-17 77.8
MsaG012118 MtrunA17_Chr1g0193871 50.575 87 41 2 37 121 11 97 2.52e-17 77.8
MsaG012118 MtrunA17_Chr1g0193881 50.575 87 41 2 37 121 11 97 2.52e-17 77.8
MsaG012118 MtrunA17_Chr7g0233061 31.618 136 83 4 7 139 148 276 5.89e-17 82.4
MsaG012118 MtrunA17_Chr8g0362231 38.384 99 60 1 42 140 25 122 7.40e-16 79.7
MsaG012118 MtrunA17_Chr5g0416341 36.634 101 63 1 42 142 29 128 1.62e-15 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012118 AT3G11440.3 40.650 492 247 13 36 500 40 513 3.10e-98 308
MsaG012118 AT3G11440.4 40.650 492 247 13 36 500 40 513 3.10e-98 308
MsaG012118 AT3G11440.1 40.650 492 247 13 36 500 40 513 3.10e-98 308
MsaG012118 AT5G06100.5 40.246 487 235 13 34 500 29 479 4.53e-94 296
MsaG012118 AT5G06100.2 40.246 487 235 13 34 500 29 479 4.53e-94 296
MsaG012118 AT5G06100.3 40.246 487 235 13 34 500 29 479 4.53e-94 296
MsaG012118 AT5G06100.4 40.246 487 235 13 34 500 29 479 4.53e-94 296
MsaG012118 AT5G06100.1 44.416 394 193 10 34 407 29 416 4.47e-91 286
MsaG012118 AT3G11440.2 45.093 377 179 9 36 387 40 413 6.42e-91 286
MsaG012118 AT5G55020.1 79.339 121 25 0 32 152 21 141 6.44e-66 223
MsaG012118 AT2G26960.1 38.936 357 161 11 37 365 20 347 4.56e-65 218
MsaG012118 AT2G32460.2 80.000 120 24 0 34 153 3 122 2.25e-64 217
MsaG012118 AT2G32460.1 80.000 120 24 0 34 153 15 134 2.68e-64 217
MsaG012118 AT4G26930.1 78.992 119 25 0 33 151 15 133 4.96e-64 214
MsaG012118 AT4G21440.1 44.974 189 83 3 24 199 7 187 2.13e-45 163
MsaG012118 AT4G28110.1 56.911 123 44 2 24 145 7 121 1.40e-44 159
MsaG012118 AT3G02940.2 62.500 104 39 0 37 140 12 115 5.82e-44 158
MsaG012118 AT3G61250.1 63.208 106 39 0 35 140 10 115 7.99e-44 157
MsaG012118 AT3G02940.1 62.500 104 39 0 37 140 12 115 8.75e-44 158
MsaG012118 AT3G02940.3 62.500 104 39 0 37 140 12 115 8.75e-44 158
MsaG012118 AT4G05100.1 58.974 117 41 1 24 140 7 116 9.62e-44 158
MsaG012118 AT1G22640.1 62.500 104 39 0 37 140 12 115 2.70e-43 154
MsaG012118 AT5G16770.4 56.410 117 43 1 24 140 7 115 1.55e-42 154
MsaG012118 AT5G16770.3 56.410 117 43 1 24 140 7 115 1.55e-42 154
MsaG012118 AT3G01530.1 60.194 103 41 0 37 139 25 127 1.62e-42 151
MsaG012118 AT4G09460.1 63.725 102 37 0 39 140 14 115 1.71e-42 152
MsaG012118 AT5G16770.1 56.410 117 43 1 24 140 7 115 2.41e-42 154
MsaG012118 AT5G16770.2 56.410 117 43 1 24 140 7 115 2.41e-42 154
MsaG012118 AT1G35515.1 61.538 104 40 0 37 140 12 115 8.89e-42 149
MsaG012118 AT3G13540.1 58.654 104 43 0 37 140 23 126 1.47e-41 150
MsaG012118 AT5G40330.1 48.299 147 66 2 38 174 13 159 1.50e-41 149
MsaG012118 AT5G10280.1 61.538 104 40 0 37 140 12 115 1.53e-41 152
MsaG012118 AT1G34670.1 56.410 117 43 1 24 140 7 115 1.73e-41 153
MsaG012118 AT2G16720.1 61.538 104 40 0 37 140 12 115 2.93e-41 149
MsaG012118 AT5G14750.1 59.223 103 42 0 38 140 17 119 2.96e-41 147
MsaG012118 AT5G65230.1 58.654 104 43 0 37 140 12 115 3.43e-41 150
MsaG012118 AT5G54230.1 59.615 104 42 0 37 140 12 115 6.29e-41 150
MsaG012118 AT2G31180.1 57.798 109 46 0 37 145 12 120 9.15e-41 147
MsaG012118 AT3G01140.2 60.577 104 41 0 37 140 12 115 9.78e-41 150
MsaG012118 AT3G47600.1 57.407 108 46 0 35 142 10 117 1.53e-40 149
MsaG012118 AT3G23250.1 56.637 113 49 0 37 149 12 124 1.63e-40 148
MsaG012118 AT4G13480.1 59.813 107 43 0 36 142 5 111 1.90e-40 147
MsaG012118 AT3G01140.1 60.577 104 41 0 37 140 55 158 1.93e-40 150
MsaG012118 AT1G66230.1 58.333 108 45 0 35 142 10 117 2.46e-40 147
MsaG012118 AT3G27810.1 55.340 103 46 0 37 139 20 122 3.00e-40 145
MsaG012118 AT5G49330.1 57.798 109 46 0 35 143 10 118 3.95e-40 149
MsaG012118 AT4G38620.1 60.784 102 40 0 39 140 14 115 4.02e-40 147
MsaG012118 AT5G26660.1 47.619 147 65 3 37 171 12 158 4.16e-40 149
MsaG012118 AT5G62470.2 57.407 108 46 0 35 142 10 117 4.46e-40 149
MsaG012118 AT5G15310.1 59.615 104 42 0 37 140 12 115 4.74e-40 148
MsaG012118 AT5G15310.4 59.615 104 42 0 37 140 12 115 5.08e-40 145
MsaG012118 AT5G15310.2 59.615 104 42 0 37 140 12 115 5.39e-40 147
MsaG012118 AT5G40350.1 55.340 103 46 0 37 139 17 119 5.61e-40 144
MsaG012118 AT1G57560.2 57.692 104 44 0 37 140 12 115 6.09e-40 146
MsaG012118 AT4G01680.3 58.491 106 44 0 37 142 12 117 6.23e-40 145
MsaG012118 AT3G13890.2 57.692 104 44 0 37 140 12 115 6.55e-40 148
MsaG012118 AT1G57560.1 57.692 104 44 0 37 140 12 115 6.79e-40 147
MsaG012118 AT4G34990.1 59.804 102 41 0 39 140 14 115 9.79e-40 145
MsaG012118 AT5G07690.1 56.604 106 46 0 34 139 9 114 9.92e-40 147
MsaG012118 AT1G74650.1 57.547 106 45 0 35 140 10 115 1.05e-39 147
MsaG012118 AT2G47190.1 55.660 106 47 0 37 142 20 125 1.06e-39 145
MsaG012118 AT5G61420.2 56.075 107 47 0 34 140 9 115 1.08e-39 148
MsaG012118 AT3G28910.1 60.185 108 41 1 33 140 10 115 1.19e-39 147
MsaG012118 AT3G24310.1 58.491 106 44 0 38 143 19 124 1.36e-39 145
MsaG012118 AT5G07700.1 51.667 120 50 1 21 140 4 115 1.48e-39 147
MsaG012118 AT5G07700.2 51.667 120 50 1 21 140 4 115 1.48e-39 147
MsaG012118 AT1G06180.1 59.434 106 43 0 35 140 10 115 1.67e-39 144
MsaG012118 AT4G01680.1 58.491 106 44 0 37 142 12 117 2.06e-39 146
MsaG012118 AT1G25340.1 50.407 123 57 1 20 142 5 123 3.78e-39 144
MsaG012118 AT1G48000.1 54.286 105 48 0 35 139 30 134 4.90e-39 142
MsaG012118 AT1G18570.1 60.577 104 41 0 37 140 13 116 4.92e-39 145
MsaG012118 AT3G27920.1 58.252 103 43 0 38 140 15 117 5.16e-39 142
MsaG012118 AT4G37780.1 56.075 107 46 1 35 140 10 116 5.57e-39 144
MsaG012118 AT1G68320.1 55.660 106 47 0 37 142 19 124 7.52e-39 143
MsaG012118 AT2G47460.1 57.547 106 45 0 35 140 10 115 7.89e-39 145
MsaG012118 AT5G12870.1 56.604 106 46 0 37 142 18 123 9.93e-39 143
MsaG012118 AT1G08810.1 56.604 106 46 0 35 140 10 115 9.93e-39 143
MsaG012118 AT5G62470.1 57.407 108 45 1 35 142 10 116 1.52e-38 144
MsaG012118 AT5G35550.1 56.731 104 45 0 37 140 14 117 2.86e-38 141
MsaG012118 AT2G26950.1 48.148 135 69 1 37 170 16 150 5.19e-38 144
MsaG012118 AT1G79180.1 55.769 104 46 0 37 140 14 117 5.94e-38 141
MsaG012118 AT5G16600.1 56.481 108 47 0 35 142 10 117 7.89e-38 142
MsaG012118 AT5G60890.1 55.660 106 47 0 37 142 12 117 8.95e-38 141
MsaG012118 AT5G62320.1 55.752 113 43 1 35 140 11 123 9.49e-38 139
MsaG012118 AT4G12350.1 54.717 106 48 0 35 140 10 115 1.04e-37 140
MsaG012118 AT5G56110.1 56.731 104 45 0 37 140 12 115 1.12e-37 141
MsaG012118 AT3G30210.1 57.547 106 45 0 38 143 28 133 1.12e-37 140
MsaG012118 AT4G17785.2 54.808 104 47 0 37 140 13 116 1.41e-37 142
MsaG012118 AT4G17785.1 54.808 104 47 0 37 140 13 116 1.51e-37 142
MsaG012118 AT1G09540.1 54.717 106 48 0 37 142 12 117 1.89e-37 142
MsaG012118 AT4G22680.1 54.808 104 47 0 37 140 12 115 3.14e-37 138
MsaG012118 AT1G63910.1 55.660 106 47 0 37 142 12 117 3.19e-37 141
MsaG012118 AT3G62610.1 55.660 106 47 0 35 140 10 115 3.76e-37 140
MsaG012118 AT3G08500.1 50.394 127 59 1 16 142 13 135 3.84e-37 140
MsaG012118 AT1G16490.1 53.846 104 48 0 37 140 14 117 4.46e-37 138
MsaG012118 AT3G60460.1 53.271 107 49 1 37 142 11 117 5.42e-37 139
MsaG012118 AT3G13890.1 53.097 113 44 1 37 140 12 124 5.95e-37 140
MsaG012118 AT1G56160.1 53.846 104 48 0 37 140 14 117 6.61e-37 138
MsaG012118 AT5G52600.1 54.630 108 49 0 33 140 8 115 6.66e-37 135
MsaG012118 AT5G14340.1 55.660 106 47 0 37 142 24 129 7.60e-37 137
MsaG012118 AT3G12720.1 52.885 104 49 0 37 140 22 125 1.33e-36 138
MsaG012118 AT1G74080.1 57.282 103 44 0 37 139 12 114 1.73e-36 138
MsaG012118 AT2G36890.1 53.913 115 50 2 37 150 12 124 2.31e-36 137
MsaG012118 AT5G65790.1 57.143 105 44 1 37 140 12 116 2.95e-36 139
MsaG012118 AT4G01680.2 52.542 118 44 1 37 142 12 129 3.66e-36 138
MsaG012118 AT5G57620.1 56.190 105 45 1 37 140 12 116 3.94e-36 137
MsaG012118 AT2G36890.2 53.913 115 50 2 37 150 53 165 4.06e-36 137
MsaG012118 AT5G23000.1 54.286 105 47 1 37 140 12 116 4.56e-36 137
MsaG012118 AT3G49690.1 57.143 105 44 1 37 140 12 116 6.23e-36 136
MsaG012118 AT5G59780.3 55.340 103 46 0 38 140 9 111 9.33e-36 134
MsaG012118 AT1G74430.1 54.808 104 47 0 37 140 12 115 1.42e-35 134
MsaG012118 AT3G28470.1 57.576 99 42 0 37 135 12 110 2.41e-35 135
MsaG012118 AT3G46130.1 54.369 103 47 0 38 140 10 112 3.36e-35 132
MsaG012118 AT1G25340.2 47.967 123 55 2 20 142 5 118 7.81e-35 132
MsaG012118 AT3G12820.1 53.846 104 48 0 37 140 14 117 1.34e-34 130
MsaG012118 AT1G25340.3 47.967 123 55 2 20 142 5 118 1.61e-34 132
MsaG012118 AT3G06490.1 56.311 103 45 0 37 139 19 121 4.11e-34 131
MsaG012118 AT1G66370.1 50.476 105 52 0 37 141 8 112 8.67e-34 128
MsaG012118 AT1G18710.1 52.885 104 49 0 37 140 12 115 2.38e-33 128
MsaG012118 AT5G49620.1 53.398 103 48 0 37 139 26 128 5.82e-33 128
MsaG012118 AT1G79180.2 42.336 137 46 1 37 140 14 150 3.97e-32 126
MsaG012118 AT3G53200.1 50.000 108 54 0 36 143 8 115 4.24e-32 124
MsaG012118 AT3G48920.1 51.961 102 49 0 38 139 19 120 1.72e-31 122
MsaG012118 AT1G66380.1 51.429 105 51 0 37 141 8 112 2.72e-31 118
MsaG012118 AT5G52260.1 48.696 115 59 0 38 152 13 127 6.13e-31 121
MsaG012118 AT1G56650.1 50.476 105 52 0 37 141 8 112 2.67e-30 119
MsaG012118 AT5G26660.2 49.123 114 46 3 70 171 14 127 1.24e-29 119
MsaG012118 AT5G49620.2 47.009 117 48 1 37 139 26 142 1.91e-29 118
MsaG012118 AT1G66390.1 50.476 105 52 0 37 141 8 112 2.74e-29 116
MsaG012118 AT4G25560.1 48.544 103 53 0 38 140 11 113 5.93e-29 116
MsaG012118 AT3G27785.1 47.619 105 54 1 37 141 187 290 1.78e-26 112
MsaG012118 AT3G27810.2 56.944 72 31 0 68 139 2 73 2.35e-26 105
MsaG012118 AT5G35550.2 61.972 71 27 0 70 140 50 120 2.46e-26 108
MsaG012118 AT5G58850.1 49.057 106 50 3 37 141 103 205 4.23e-26 111
MsaG012118 AT5G11050.1 42.537 134 63 4 39 171 105 225 7.64e-26 110
MsaG012118 AT4G18770.1 48.113 106 51 3 37 141 215 317 8.95e-26 110
MsaG012118 AT3G55730.1 48.077 104 51 2 39 141 56 157 1.06e-25 109
MsaG012118 AT5G40360.1 42.453 106 60 1 36 141 155 259 1.10e-25 108
MsaG012118 AT5G02320.1 41.844 141 69 3 37 174 125 255 1.31e-25 110
MsaG012118 AT5G02320.2 41.844 141 69 3 37 174 125 255 1.31e-25 110
MsaG012118 AT3G09230.1 50.000 102 50 1 39 140 55 155 1.52e-25 108
MsaG012118 AT5G02320.3 41.844 141 69 3 37 174 65 195 1.88e-25 110
MsaG012118 AT5G40350.2 57.143 70 30 0 70 139 5 74 2.58e-25 102
MsaG012118 AT5G14750.3 60.294 68 27 0 73 140 18 85 2.63e-25 102
MsaG012118 AT3G12820.2 63.235 68 25 0 73 140 2 69 3.71e-25 103
MsaG012118 AT2G23290.1 50.000 102 50 1 39 140 13 113 3.94e-25 106
MsaG012118 AT3G47600.2 58.904 73 30 0 70 142 39 111 1.02e-24 105
MsaG012118 AT5G67300.1 48.039 102 52 1 39 140 6 106 1.35e-24 104
MsaG012118 AT3G46130.3 59.722 72 29 0 69 140 9 80 1.84e-24 102
MsaG012118 AT2G39880.1 45.872 109 56 2 33 140 44 150 2.42e-24 105
MsaG012118 AT4G37260.1 47.059 102 53 1 39 140 13 113 3.58e-24 103
MsaG012118 AT5G59780.2 59.155 71 29 0 70 140 20 90 4.03e-24 100
MsaG012118 AT3G46130.4 59.155 71 29 0 70 140 20 90 5.48e-24 100
MsaG012118 AT3G53200.2 56.757 74 32 0 70 143 9 82 6.15e-24 100
MsaG012118 AT3G50060.1 44.037 109 60 1 39 147 6 113 8.67e-24 102
MsaG012118 AT3G09370.1 46.154 104 55 1 37 140 128 230 1.22e-23 104
MsaG012118 AT3G09370.2 46.154 104 55 1 37 140 133 235 1.22e-23 104
MsaG012118 AT3G09370.3 46.154 104 55 1 37 140 141 243 1.50e-23 104
MsaG012118 AT4G32730.1 43.269 104 58 1 37 140 85 187 1.90e-23 105
MsaG012118 AT4G32730.5 43.269 104 58 1 37 140 85 187 1.93e-23 105
MsaG012118 AT4G32730.4 43.269 104 58 1 37 140 85 187 1.93e-23 105
MsaG012118 AT4G32730.3 43.269 104 58 1 37 140 85 187 1.93e-23 105
MsaG012118 AT4G32730.2 43.269 104 58 1 37 140 85 187 1.93e-23 105
MsaG012118 AT1G17950.1 44.828 116 61 2 35 149 1 114 3.73e-23 99.0
MsaG012118 AT5G11510.3 43.269 104 58 1 37 140 79 181 5.04e-23 103
MsaG012118 AT5G11510.1 43.269 104 58 1 37 140 79 181 5.04e-23 103
MsaG012118 AT5G11510.4 43.269 104 58 1 37 140 79 181 5.04e-23 103
MsaG012118 AT5G11510.2 43.269 104 58 1 37 140 79 181 6.23e-23 103
MsaG012118 AT5G11510.5 43.269 104 58 1 37 140 79 181 6.28e-23 103
MsaG012118 AT5G17800.1 44.860 107 58 1 36 142 90 195 8.14e-23 99.8
MsaG012118 AT1G26780.2 45.370 108 56 2 36 142 95 200 8.60e-23 100
MsaG012118 AT1G26780.1 45.370 108 56 2 36 142 95 200 8.90e-23 98.6
MsaG012118 AT4G33450.1 43.519 108 60 1 38 145 18 124 1.53e-22 97.4
MsaG012118 AT1G69560.2 33.333 207 116 6 9 208 89 280 1.78e-22 99.4
MsaG012118 AT1G69560.1 33.333 207 116 6 9 208 73 264 1.94e-22 99.0
MsaG012118 AT1G18960.1 44.118 102 54 2 39 140 10 108 1.69e-21 95.5
MsaG012118 AT1G66380.3 55.556 72 32 0 70 141 8 79 4.27e-21 89.0
MsaG012118 AT2G25230.1 42.308 104 58 2 37 140 24 125 4.68e-21 92.8
MsaG012118 AT1G73410.1 44.954 109 57 2 35 142 2 108 1.30e-20 91.7
MsaG012118 AT4G00540.2 34.146 164 91 4 37 197 101 250 1.70e-20 94.4
MsaG012118 AT1G73410.2 44.954 109 57 2 35 142 2 108 2.12e-20 89.7
MsaG012118 AT4G00540.1 34.146 164 91 4 37 197 99 248 2.95e-20 94.0
MsaG012118 AT3G29020.1 41.121 107 62 1 36 142 62 167 3.11e-20 90.1
MsaG012118 AT3G29020.2 41.121 107 62 1 36 142 64 169 3.63e-20 91.7
MsaG012118 AT1G66380.2 50.000 78 39 0 37 114 8 85 1.68e-19 84.3
MsaG012118 AT1G22640.3 63.158 57 21 0 84 140 2 58 2.53e-19 86.7
MsaG012118 AT2G37630.1 38.835 103 61 1 42 142 7 109 4.58e-19 89.4
MsaG012118 AT5G40430.1 34.307 137 84 4 4 140 22 152 8.81e-19 86.7
MsaG012118 AT3G23250.2 53.030 66 31 0 84 149 2 67 1.95e-17 82.0
MsaG012118 AT1G71030.2 50.769 65 32 0 76 140 5 69 4.70e-17 79.7
MsaG012118 AT1G71030.1 50.769 65 32 0 76 140 19 83 6.04e-17 79.7
MsaG012118 AT5G14750.4 53.448 58 27 0 83 140 1 58 7.14e-17 78.2
MsaG012118 AT5G14750.2 53.448 58 27 0 83 140 1 58 7.14e-17 78.2
MsaG012118 AT1G14350.2 33.663 101 66 1 42 142 28 127 8.52e-15 77.0
MsaG012118 AT1G14350.1 33.663 101 66 1 42 142 28 127 8.52e-15 77.0
MsaG012118 AT5G39700.1 36.000 100 63 1 40 139 57 155 1.26e-13 70.1
MsaG012118 AT2G02820.2 32.673 101 67 1 42 142 33 132 1.04e-12 70.9
MsaG012118 AT2G02820.1 32.673 101 67 1 42 142 33 132 1.54e-12 70.1
MsaG012118 AT2G02820.3 32.673 101 67 1 42 142 33 132 2.94e-12 68.6
MsaG012118 AT5G59780.1 54.348 46 21 0 95 140 1 46 1.09e-11 63.9
MsaG012118 AT3G46130.2 54.348 46 21 0 95 140 1 46 1.72e-11 63.9
MsaG012118 AT4G25560.2 52.174 46 22 0 95 140 2 47 7.07e-11 62.8

Find 146 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGATCCTTTCTTTAAATT+TGG 0.143322 3:+19358766 None:intergenic
ATGATCCTGAACATGGTAAA+AGG 0.208458 3:+19356569 None:intergenic
GAACAATTGTTATTTGAATT+TGG 0.225333 3:+19356210 None:intergenic
CAGCCACCAAAGCCGGTTTC+TGG 0.233349 3:+19356381 None:intergenic
ATCTGCAGAAGACGCTATTT+TGG 0.270851 3:-19358899 MsaT012118.1:CDS
TGCCCATCTGTTTCCCATTT+CGG 0.272213 3:+19358705 None:intergenic
CAAAGCCGGTTTCTGGATAT+TGG 0.282709 3:+19356388 None:intergenic
TGACAATTTGAAGGAAAATC+AGG 0.295404 3:-19356745 MsaT012118.1:CDS
TAACAGCATGGCACTCATTC+AGG 0.301452 3:+19356061 None:intergenic
TCGAGCGTGCCACTATTATT+TGG 0.311579 3:+19356261 None:intergenic
CAGAAACCGGCTTTGGTGGC+TGG 0.325999 3:-19356380 MsaT012118.1:CDS
GATAAGACTGTACAATCTTT+CGG 0.331678 3:-19356540 MsaT012118.1:CDS
CAAGTGGAACAAACAAGAAT+TGG 0.336573 3:-19356599 MsaT012118.1:CDS
CCACATGCTTATAATCTGTT+AGG 0.339714 3:+19355536 None:intergenic
ATTGCTCGCAAACGAACTTC+TGG 0.353788 3:+19356873 None:intergenic
GGTAATGGAGGAAGTGTTAA+TGG 0.364177 3:-19358952 MsaT012118.1:CDS
CCCGATGACGCCTCTTGGTC+CGG 0.365400 3:+19356916 None:intergenic
TGTCTTCTTCTGATAAATAA+TGG 0.371278 3:+19356236 None:intergenic
TGCAATATTTGACAATTTGA+AGG 0.373979 3:-19356754 MsaT012118.1:CDS
CACTGTTTGGGGTAGAAACT+TGG 0.377211 3:+19355671 None:intergenic
TGCTCAACTCCATTCCGAAA+TGG 0.378343 3:-19358719 MsaT012118.1:CDS
AACGCTGTTCAGAAGCATTC+GGG 0.385357 3:-19358841 MsaT012118.1:CDS
TTCTCAGGCAAAATTGTAAT+AGG 0.388890 3:+19356714 None:intergenic
ATAATGAAATAAAGAACTAT+TGG 0.392597 3:-19356944 MsaT012118.1:CDS
AGAAACCGGCTTTGGTGGCT+GGG 0.403583 3:-19356379 MsaT012118.1:CDS
GGGGTAGAAACTTGGTCAAC+AGG 0.408150 3:+19355679 None:intergenic
ACTGACCCTGCATCTCCCTT+TGG 0.411283 3:-19356096 MsaT012118.1:CDS
TTTATCCCATGAGTTTGTAT+TGG 0.414468 3:+19356035 None:intergenic
TTGCATTCTCCTCTTGATCC+TGG 0.422314 3:-19356516 MsaT012118.1:CDS
GCTCAACTCCATTCCGAAAT+GGG 0.424645 3:-19358718 MsaT012118.1:CDS
ATGCTATTAGCAGAAATATC+AGG 0.424760 3:+19356690 None:intergenic
GAACGCTGTTCAGAAGCATT+CGG 0.427694 3:-19358842 MsaT012118.1:CDS
GAACTCTCACCTCCGTCAAC+AGG 0.428520 3:+19356156 None:intergenic
CCAAGAAAAGACATTGTTGA+TGG 0.435314 3:+19356624 None:intergenic
TTAAGGCCAAATTTAAAGAA+AGG 0.440027 3:-19358772 MsaT012118.1:CDS
TATCCAGAAACCGGCTTTGG+TGG 0.441737 3:-19356384 MsaT012118.1:CDS
GGAAGCATGGAGAAGGCAAC+TGG 0.444924 3:-19358864 MsaT012118.1:CDS
CCACATGGTGCGCAAGAGTC+CGG 0.446215 3:-19356294 MsaT012118.1:CDS
CAATATCCAGAAACCGGCTT+TGG 0.446614 3:-19356387 MsaT012118.1:CDS
AACTTCACAGCCTTGGATGT+TGG 0.448955 3:+19356426 None:intergenic
GAAACCGGCTTTGGTGGCTG+GGG 0.453433 3:-19356378 MsaT012118.1:CDS
ATTATTTGGTGAAGAACAAC+CGG 0.458566 3:+19356275 None:intergenic
CGGTCGAATTGTGAGGGTAA+TGG 0.459783 3:-19358967 MsaT012118.1:CDS
AACATCCAAGGCTGTGAAGT+TGG 0.463269 3:-19356424 MsaT012118.1:CDS
TGTTCTTCACCAAATAATAG+TGG 0.463312 3:-19356270 MsaT012118.1:CDS
GTTGCACCAAAGGGAGATGC+AGG 0.466644 3:+19356090 None:intergenic
GCCAGCCCGATGACGCCTCT+TGG 0.468187 3:+19356911 None:intergenic
CCCGGACCAAGAGGCGTCAT+CGG 0.469874 3:-19356917 MsaT012118.1:CDS
CCGGACCAAGAGGCGTCATC+GGG 0.470564 3:-19356916 MsaT012118.1:CDS
ACCACCCCAGCCACCAAAGC+CGG 0.479091 3:+19356374 None:intergenic
CATTGATTCCACCAGTGCCT+TGG 0.480224 3:+19356832 None:intergenic
GCAGAAATATCAGGATTCTC+AGG 0.482477 3:+19356699 None:intergenic
ACCAAGAGGCGTCATCGGGC+TGG 0.485549 3:-19356912 MsaT012118.1:CDS
GATTGGCATGAGCAGTGCTA+TGG 0.486316 3:-19355592 MsaT012118.1:CDS
GGGACTTATTCTTCAAGTAC+AGG 0.486682 3:-19355508 MsaT012118.1:CDS
GGTGGAGTTGTTCTGAAGAA+AGG 0.488612 3:-19358931 MsaT012118.1:CDS
TGAGATGGGCAAATCACTTA+AGG 0.491691 3:-19358789 MsaT012118.1:CDS
ACAGACTCATTCAATGGAGA+TGG 0.492533 3:+19356342 None:intergenic
GAGTTATGTGAGGGGAGACC+AGG 0.492927 3:+19356498 None:intergenic
TGAACATGAATGAGACAGAA+TGG 0.495262 3:-19356128 MsaT012118.1:CDS
TCACTCCAATATCCAGAAAC+CGG 0.496933 3:-19356393 MsaT012118.1:CDS
TGATCCTGAACATGGTAAAA+GGG 0.497281 3:+19356570 None:intergenic
GACAATTTGAAGGAAAATCA+GGG 0.502694 3:-19356744 MsaT012118.1:CDS
ACCGGCTTTGGTGGCTGGGG+TGG 0.503981 3:-19356375 MsaT012118.1:CDS
AGAGGAATTGCCATTTGATA+CGG 0.505395 3:+19356458 None:intergenic
TACCGCCATTCCGTATCAAA+TGG 0.505543 3:-19356468 MsaT012118.1:CDS
CAGGATTGAGGTTGCACCAA+AGG 0.505711 3:+19356080 None:intergenic
ACATCAACAGACTCATTCAA+TGG 0.508299 3:+19356336 None:intergenic
TCTGAAGCTAACATGACATC+TGG 0.511041 3:+19355613 None:intergenic
ATCTGTTTCCCATTTCGGAA+TGG 0.514519 3:+19358710 None:intergenic
AGTAAACATGGCCAAGGCAC+TGG 0.516230 3:-19356843 MsaT012118.1:CDS
GAGCTCCAACTTCACAGCCT+TGG 0.521427 3:+19356419 None:intergenic
CCGATGACGCCTCTTGGTCC+GGG 0.523404 3:+19356917 None:intergenic
GTGGAGTTGTTCTGAAGAAA+GGG 0.523448 3:-19358930 MsaT012118.1:CDS
ACACCTGCTCAGAACTATAG+TGG 0.523752 3:-19356009 MsaT012118.1:intron
GATGGCACAGAATTGCAATA+TGG 0.524831 3:+19356642 None:intergenic
GGGAAACAGATGGGCACGTA+TGG 0.525456 3:-19358698 MsaT012118.1:CDS
AGGATTGAGGTTGCACCAAA+GGG 0.525462 3:+19356081 None:intergenic
TTCGTTTGCGAGCAATGAAA+GGG 0.527467 3:-19356866 MsaT012118.1:CDS
CAGACTCATTCAATGGAGAT+GGG 0.528224 3:+19356343 None:intergenic
ATGTCATGTTAGCTTCAGAT+TGG 0.528468 3:-19355609 MsaT012118.1:CDS
ATGGCACTCATTCAGGATTG+AGG 0.529262 3:+19356068 None:intergenic
GGAATCAATGATGGTGATAG+AGG 0.529519 3:-19356819 MsaT012118.1:CDS
TTAACACCAATACAAACTCA+TGG 0.531847 3:-19356041 MsaT012118.1:CDS
GTTGACTACGTCAGGAAGCA+TGG 0.533184 3:-19358877 MsaT012118.1:CDS
GTTCGTTTGCGAGCAATGAA+AGG 0.541123 3:-19356867 MsaT012118.1:CDS
ATTCCGAAATGGGAAACAGA+TGG 0.547886 3:-19358708 MsaT012118.1:CDS
ACAGATTATAAGCATGTGGC+TGG 0.548005 3:-19355532 MsaT012118.1:CDS
ATTGGCATGAGCAGTGCTAT+GGG 0.550093 3:-19355591 MsaT012118.1:CDS
TCTTGCGCACCATGTGGCAG+AGG 0.550222 3:+19356300 None:intergenic
TTCCGAAATGGGAAACAGAT+GGG 0.553867 3:-19358707 MsaT012118.1:CDS
GTTTCTGGATATTGGAGTGA+AGG 0.556016 3:+19356396 None:intergenic
TCTACTACAACTCCTGTTGA+CGG 0.564833 3:-19356168 MsaT012118.1:CDS
GGATGTTGGCTTAGAAGTAG+AGG 0.565927 3:+19356440 None:intergenic
ATTATAAGCATGTGGCTGGT+GGG 0.566498 3:-19355528 MsaT012118.1:CDS
GAACATGAATGAGACAGAAT+GGG 0.567198 3:-19356127 MsaT012118.1:CDS
TTGTTCTGAAGAAAGGGCCG+TGG 0.569423 3:-19358924 MsaT012118.1:CDS
TGTTCAACATAGACATAGAT+CGG 0.574967 3:+19355644 None:intergenic
GATTATAAGCATGTGGCTGG+TGG 0.575177 3:-19355529 MsaT012118.1:CDS
CATTCGGGCTTGTCTCGTTG+TGG 0.575251 3:-19358826 MsaT012118.1:CDS
AATTGCCATTTGATACGGAA+TGG 0.575303 3:+19356463 None:intergenic
AGTGATTTGCCCATCTCAGA+CGG 0.575929 3:+19358794 None:intergenic
CGAACTTCTGGAGGATAGAG+TGG 0.579102 3:+19356885 None:intergenic
TACGTCAGGAAGCATGGAGA+AGG 0.579724 3:-19358871 MsaT012118.1:CDS
TACTTCTAAGCCAACATCCA+AGG 0.580718 3:-19356436 MsaT012118.1:CDS
CAGAACTATGATCCTGAACA+TGG 0.580858 3:+19356562 None:intergenic
AGGATCATTTACTGCTGATG+AGG 0.581122 3:-19358752 MsaT012118.1:CDS
GAGGGGAGACCAGGATCAAG+AGG 0.581130 3:+19356507 None:intergenic
TTTCTGGATATTGGAGTGAA+GGG 0.581747 3:+19356397 None:intergenic
TGTCTATGTTGAACATCACT+TGG 0.584021 3:-19355636 MsaT012118.1:CDS
TAAAGAACTATTGGAATACC+CGG 0.592308 3:-19356935 MsaT012118.1:CDS
TAACCACTATAGTTCTGAGC+AGG 0.593277 3:+19356006 None:intergenic
TTGTATTGGTGTTAACAGCA+TGG 0.595840 3:+19356049 None:intergenic
GGACTTATTCTTCAAGTACA+GGG 0.596006 3:-19355507 MsaT012118.1:CDS
AAATAATAGTGGCACGCTCG+AGG 0.597636 3:-19356259 MsaT012118.1:CDS
ACGGTCACGGTCGAATTGTG+AGG 0.606038 3:-19358974 MsaT012118.1:CDS
AATCAGTCTCCTCTGCCACA+TGG 0.606298 3:-19356309 MsaT012118.1:CDS
GACTCATTCAATGGAGATGG+GGG 0.608447 3:+19356345 None:intergenic
TAACACCAATACAAACTCAT+GGG 0.608765 3:-19356040 MsaT012118.1:CDS
TGCTCTGCAACGATCAATCA+CGG 0.609079 3:-19358993 MsaT012118.1:CDS
GCAACGATCAATCACGGTCA+CGG 0.611923 3:-19358987 MsaT012118.1:CDS
TAATACATTGAGTTATGTGA+GGG 0.613054 3:+19356489 None:intergenic
AAAGGGAGTAAACATGGCCA+AGG 0.613145 3:-19356849 MsaT012118.1:CDS
GCGTCTTCTGCAGATGTCCA+CGG 0.613237 3:+19358907 None:intergenic
ATTTCATTATCTGTACGACC+AGG 0.614489 3:+19356957 None:intergenic
AAACATGGCCAAGGCACTGG+TGG 0.614540 3:-19356840 MsaT012118.1:CDS
GGCACTGGTGGAATCAATGA+TGG 0.615452 3:-19356828 MsaT012118.1:CDS
AGACTCATTCAATGGAGATG+GGG 0.619318 3:+19356344 None:intergenic
GCAATGAAAGGGAGTAAACA+TGG 0.622324 3:-19356855 MsaT012118.1:CDS
AATGGAGGAAGTGTTAATGG+TGG 0.626822 3:-19358949 MsaT012118.1:CDS
GGCACAGAATTGCAATATGG+AGG 0.628604 3:+19356645 None:intergenic
GAATCAATGATGGTGATAGA+GGG 0.631416 3:-19356818 MsaT012118.1:CDS
GTAATACATTGAGTTATGTG+AGG 0.641674 3:+19356488 None:intergenic
GCTCGCAAACGAACTTCTGG+AGG 0.644148 3:+19356876 None:intergenic
CCTAACAGATTATAAGCATG+TGG 0.645400 3:-19355536 MsaT012118.1:CDS
TCGAATTGTGAGGGTAATGG+AGG 0.645646 3:-19358964 MsaT012118.1:CDS
CGGTCACGGTCGAATTGTGA+GGG 0.647751 3:-19358973 MsaT012118.1:CDS
GACTTATTCTTCAAGTACAG+GGG 0.651682 3:-19355506 MsaT012118.1:CDS
TGCCATTTGATACGGAATGG+CGG 0.662997 3:+19356466 None:intergenic
ATTGGAATACCCGGACCAAG+AGG 0.666025 3:-19356926 MsaT012118.1:CDS
ACTTATTCTTCAAGTACAGG+GGG 0.671833 3:-19355505 MsaT012118.1:CDS
CCGGACTCTTGCGCACCATG+TGG 0.683210 3:+19356294 None:intergenic
TTGCACCAAAGGGAGATGCA+GGG 0.696277 3:+19356091 None:intergenic
ACTACAACTCCTGTTGACGG+AGG 0.707521 3:-19356165 MsaT012118.1:CDS
AATACATTGAGTTATGTGAG+GGG 0.735887 3:+19356490 None:intergenic
GCACGAGAAGAACATGACTG+AGG 0.757120 3:-19355569 MsaT012118.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 19355483 19359049 19355483 ID=MsaG012118
Chr3 mRNA 19355483 19359049 19355483 ID=MsaT012118.1;Parent=MsaG012118
Chr3 exon 19355483 19355721 19355483 ID=MsaT012118.1.exon3;Parent=MsaT012118.1
Chr3 CDS 19355483 19355721 19355483 ID=cds.MsaT012118.1;Parent=MsaT012118.1
Chr3 exon 19356010 19356982 19356010 ID=MsaT012118.1.exon2;Parent=MsaT012118.1
Chr3 CDS 19356010 19356982 19356010 ID=cds.MsaT012118.1;Parent=MsaT012118.1
Chr3 exon 19358690 19359049 19358690 ID=MsaT012118.1.exon1;Parent=MsaT012118.1
Chr3 CDS 19358690 19359049 19358690 ID=cds.MsaT012118.1;Parent=MsaT012118.1
Gene Sequence

>MsaT012118.1

ATGAGTCGAGTGAAAAATGAGATTGAAGATGATATGCTCTGCAACGATCAATCACGGTCACGGTCGAATTGTGAGGGTAATGGAGGAAGTGTTAATGGTGGAGTTGTTCTGAAGAAAGGGCCGTGGACATCTGCAGAAGACGCTATTTTGGTTGACTACGTCAGGAAGCATGGAGAAGGCAACTGGAACGCTGTTCAGAAGCATTCGGGCTTGTCTCGTTGTGGAAAAAGTTGCCGTCTGAGATGGGCAAATCACTTAAGGCCAAATTTAAAGAAAGGATCATTTACTGCTGATGAGGAGCATTTGATTGCTCAACTCCATTCCGAAATGGGAAACAGATGGGCACGTATGGCTGCGCACTTGCCTGGTCGTACAGATAATGAAATAAAGAACTATTGGAATACCCGGACCAAGAGGCGTCATCGGGCTGGCTTGCCACTCTATCCTCCAGAAGTTCGTTTGCGAGCAATGAAAGGGAGTAAACATGGCCAAGGCACTGGTGGAATCAATGATGGTGATAGAGGGCATCATGATTTCTTGCCGAAAAACAACTATGAGATGCATGATGCAATATTTGACAATTTGAAGGAAAATCAGGGAATCTTACCTATTACAATTTTGCCTGAGAATCCTGATATTTCTGCTAATAGCATTATGCGAAACAGTCTTGATTCTCCTCCATATTGCAATTCTGTGCCATCAACAATGTCTTTTCTTGGTTCAAGTGGAACAAACAAGAATTGGTTTTATCCCTTTTACCATGTTCAGGATCATAGTTCTGATAAGACTGTACAATCTTTCGGATTGCATTCTCCTCTTGATCCTGGTCTCCCCTCACATAACTCAATGTATTACCGCCATTCCGTATCAAATGGCAATTCCTCTACTTCTAAGCCAACATCCAAGGCTGTGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACCGGCTTTGGTGGCTGGGGTGGTAACTTTCCCCCATCTCCATTGAATGAGTCTGTTGATGTATTCAATCAGTCTCCTCTGCCACATGGTGCGCAAGAGTCCGGTTGTTCTTCACCAAATAATAGTGGCACGCTCGAGGCCATTATTTATCAGAAGAAGACACTTCCAAATTCAAATAACAATTGTTCTGACAAGAGTTCACATTCATCTACTACAACTCCTGTTGACGGAGGTGAGAGTTCTGCTTTGAACATGAATGAGACAGAATGGGATGACTACACTGACCCTGCATCTCCCTTTGGTGCAACCTCAATCCTGAATGAGTGCCATGCTGTTAACACCAATACAAACTCATGGGATAAATTGACACCTGCTCAGAACTATAGTGGCAGCAATGTTAAATATGAGCCTGTTGACCAAGTTTCTACCCCAAACAGTGAAAACCGATCTATGTCTATGTTGAACATCACTTGGCCAGATGTCATGTTAGCTTCAGATTGGCATGAGCAGTGCTATGGGCACGAGAAGAACATGACTGAGGCTAGTGACAACCTAACAGATTATAAGCATGTGGCTGGTGGGACTTATTCTTCAAGTACAGGGGGTCGCTTTATGCACATGGCATGA
Protein sequence

>MsaT012118.1

MSRVKNEIEDDMLCNDQSRSRSNCEGNGGSVNGGVVLKKGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLSRCGKSCRLRWANHLRPNLKKGSFTADEEHLIAQLHSEMGNRWARMAAHLPGRTDNEIKNYWNTRTKRRHRAGLPLYPPEVRLRAMKGSKHGQGTGGINDGDRGHHDFLPKNNYEMHDAIFDNLKENQGILPITILPENPDISANSIMRNSLDSPPYCNSVPSTMSFLGSSGTNKNWFYPFYHVQDHSSDKTVQSFGLHSPLDPGLPSHNSMYYRHSVSNGNSSTSKPTSKAVKLELPSLQYPETGFGGWGGNFPPSPLNESVDVFNQSPLPHGAQESGCSSPNNSGTLEAIIYQKKTLPNSNNNCSDKSSHSSTTTPVDGGESSALNMNETEWDDYTDPASPFGATSILNECHAVNTNTNSWDKLTPAQNYSGSNVKYEPVDQVSTPNSENRSMSMLNITWPDVMLASDWHEQCYGHEKNMTEASDNLTDYKHVAGGTYSSSTGGRFMHMA*