AlfalfaGEDB | MsaG012209

M. sativa ssp. caerulea / MsaG012209

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0008150 GO:0009507 GO:0009536 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01388.24

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012209	XP_039688313.1	95.556	225	10	0	1	225	1	225	3.33e-155	439

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012209	sp\|Q9LTT3\|HMG10_ARATH	50.000	186	77	3	25	208	34	205	3.06e-51	171

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012209	I3SK14	93.301	209	14	0	17	225	26	234	1.78e-138	397

TFs/TRs:

Gene ID	Type	Classification
MsaG012209	TR	ARID

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000070	MsaG012209	0.809189	3.650793e-50	6.113456e-48
MsaG000113	MsaG012209	0.833398	9.895847e-56	3.160685e-53
MsaG000151	MsaG012209	0.818109	4.056785e-52	8.491351e-50
MsaG000242	MsaG012209	0.814647	2.393255e-51	4.585298e-49
MsaG000410	MsaG012209	0.820534	1.143337e-52	2.550400e-50
MsaG000496	MsaG012209	0.821989	5.300432e-53	1.228839e-50
MsaG001371	MsaG012209	0.828441	1.606687e-54	4.448547e-52
MsaG001724	MsaG012209	0.820479	1.176854e-52	2.621360e-50
MsaG001765	MsaG012209	0.821447	7.061425e-53	1.613673e-50
MsaG001878	MsaG012209	0.858247	1.834194e-62	1.334888e-59
MsaG002350	MsaG012209	0.808167	6.021554e-50	9.838742e-48
MsaG002555	MsaG012209	0.831445	2.999903e-55	9.050041e-53
MsaG002814	MsaG012209	0.801169	1.712128e-48	2.376769e-46
MsaG003072	MsaG012209	0.850912	2.384444e-60	1.333626e-57
MsaG003291	MsaG012209	0.815676	1.417961e-51	2.788350e-49
MsaG003503	MsaG012209	0.815139	1.863998e-51	3.615856e-49
MsaG003632	MsaG012209	0.822229	4.664524e-53	1.088383e-50
MsaG003795	MsaG012209	0.804484	3.565972e-49	5.341804e-47
MsaG003863	MsaG012209	0.803266	6.366679e-49	9.272169e-47
MsaG003999	MsaG012209	0.800100	2.822027e-48	3.824090e-46
MsaG003972	MsaG012209	0.811697	1.055647e-50	1.879100e-48
MsaG004133	MsaG012209	0.802929	7.470277e-49	1.079506e-46
MsaG004152	MsaG012209	0.837071	1.182456e-56	4.215207e-54
MsaG004153	MsaG012209	0.849281	6.789818e-60	3.590845e-57
MsaG004426	MsaG012209	0.825496	8.066018e-54	2.056906e-51
MsaG004408	MsaG012209	0.845385	7.879341e-59	3.656638e-56
MsaG004463	MsaG012209	0.825974	6.218925e-54	1.607165e-51
MsaG004656	MsaG012209	0.818385	3.514320e-52	7.408497e-50
MsaG005003	MsaG012209	0.814166	3.054669e-51	5.782245e-49
MsaG005379	MsaG012209	0.805287	2.426913e-49	3.703883e-47
MsaG005512	MsaG012209	0.818017	4.252993e-52	8.881097e-50
MsaG005601	MsaG012209	0.804420	3.676457e-49	5.499231e-47
MsaG005880	MsaG012209	0.817444	5.721266e-52	1.177187e-49
MsaG006013	MsaG012209	0.825515	7.983176e-54	2.036908e-51
MsaG005964	MsaG012209	0.828643	1.436092e-54	3.998737e-52
MsaG006160	MsaG012209	0.802354	9.803093e-49	1.398113e-46
MsaG006174	MsaG012209	0.831761	2.509417e-55	7.641426e-53
MsaG006480	MsaG012209	0.808175	5.999065e-50	9.803778e-48
MsaG006517	MsaG012209	0.807693	7.586626e-50	1.225534e-47
MsaG006608	MsaG012209	0.809872	2.608076e-50	4.440064e-48
MsaG006612	MsaG012209	0.843679	2.255481e-58	9.898518e-56
MsaG006681	MsaG012209	0.808016	6.480231e-50	1.055007e-47
MsaG006691	MsaG012209	0.821932	5.462055e-53	1.264369e-50
MsaG006798	MsaG012209	0.814903	2.102050e-51	4.053481e-49
MsaG006841	MsaG012209	0.804442	3.638518e-49	5.445128e-47
MsaG007092	MsaG012209	0.806267	1.514280e-49	2.364986e-47
MsaG007426	MsaG012209	0.800063	2.871157e-48	3.887502e-46
MsaG007481	MsaG012209	0.827822	2.260721e-54	6.151480e-52
MsaG007551	MsaG012209	0.837784	7.780553e-57	2.834676e-54
MsaG008288	MsaG012209	0.806345	1.458358e-49	2.281803e-47
MsaG008704	MsaG012209	0.800251	2.630223e-48	3.576327e-46
MsaG008909	MsaG012209	0.812926	5.706201e-51	1.047124e-48
MsaG009071	MsaG012209	0.828915	1.235012e-54	3.465070e-52
MsaG009140	MsaG012209	0.801465	1.489864e-48	2.082157e-46
MsaG009261	MsaG012209	0.825337	8.791116e-54	2.232016e-51
MsaG010372	MsaG012209	0.826267	5.301346e-54	1.381160e-51
MsaG011386	MsaG012209	0.817988	4.318206e-52	9.010422e-50
MsaG011508	MsaG012209	0.804099	4.284285e-49	6.361256e-47
MsaG011881	MsaG012209	0.806762	1.192346e-49	1.884007e-47
MsaG012060	MsaG012209	0.805272	2.444717e-49	3.729792e-47
MsaG012209	MsaG012411	0.825763	6.975102e-54	1.791968e-51
MsaG012209	MsaG012467	0.802796	7.955153e-49	1.146041e-46
MsaG012209	MsaG012594	0.819931	1.569201e-52	3.444892e-50
MsaG012209	MsaG012639	0.801092	1.774751e-48	2.459397e-46
MsaG012209	MsaG013884	0.807810	7.164610e-50	1.160651e-47
MsaG012209	MsaG015090	0.842474	4.705295e-58	1.986765e-55
MsaG012209	MsaG015145	0.848931	8.487601e-60	4.435396e-57
MsaG012209	MsaG015692	0.803670	5.255782e-49	7.726131e-47
MsaG012209	MsaG015809	0.821254	7.820902e-53	1.778173e-50
MsaG012209	MsaG015853	0.844444	1.409226e-58	6.340277e-56
MsaG012209	MsaG016163	0.801651	1.365535e-48	1.916475e-46
MsaG012209	MsaG016220	0.805653	2.036135e-49	3.134140e-47
MsaG012209	MsaG016247	0.810913	1.558953e-50	2.722134e-48
MsaG012209	MsaG016473	0.812902	5.774500e-51	1.059017e-48
MsaG012209	MsaG016550	0.814159	3.064556e-51	5.799975e-49
MsaG012209	MsaG017302	0.801205	1.683655e-48	2.339087e-46
MsaG012209	MsaG017504	0.849023	8.003707e-60	4.195738e-57
MsaG012209	MsaG017839	0.811454	1.191317e-50	2.108013e-48
MsaG012209	MsaG017907	0.808150	6.070452e-50	9.914599e-48
MsaG012209	MsaG018608	0.834646	4.836740e-56	1.603104e-53
MsaG012209	MsaG018848	0.825268	9.126105e-54	2.312641e-51
MsaG012209	MsaG018876	0.808037	6.416869e-50	1.045183e-47
MsaG012209	MsaG019083	0.835362	3.199049e-56	1.083211e-53
MsaG012209	MsaG019092	0.834303	5.893336e-56	1.933317e-53
MsaG012209	MsaG019525	0.822397	4.267218e-53	1.000193e-50
MsaG012209	MsaG019589	0.858763	1.288689e-62	9.561037e-60
MsaG012209	MsaG020202	0.835507	2.940256e-56	9.999476e-54
MsaG012209	MsaG020362	0.813137	5.131240e-51	9.465895e-49
MsaG012209	MsaG020583	0.800378	2.478353e-48	3.379608e-46
MsaG012209	MsaG020618	0.819810	1.671572e-52	3.657821e-50
MsaG012209	MsaG020648	0.811980	9.163950e-51	1.642609e-48
MsaG012209	MsaG020712	0.815806	1.326658e-51	2.617417e-49
MsaG012209	MsaG020754	0.817934	4.439850e-52	9.251302e-50
MsaG012209	MsaG020838	0.804633	3.320057e-49	4.990675e-47
MsaG012209	MsaG022633	0.804557	3.444016e-49	5.167895e-47
MsaG012209	MsaG023674	0.855505	1.167206e-61	7.680037e-59
MsaG012209	MsaG023689	0.801354	1.569657e-48	2.188147e-46
MsaG012209	MsaG023692	0.803191	6.598417e-49	9.593194e-47
MsaG012209	MsaG023960	0.842606	4.343468e-58	1.841698e-55
MsaG012209	MsaG023967	0.822172	4.809267e-53	1.120421e-50
MsaG012209	MsaG024008	0.825948	6.309069e-54	1.629297e-51
MsaG012209	MsaG024287	0.802506	9.124090e-49	1.305790e-46
MsaG012209	MsaG026578	0.816436	9.610056e-52	1.926607e-49
MsaG012209	MsaG026719	0.804006	4.478958e-49	6.635831e-47
MsaG012209	MsaG026963	0.810710	1.723489e-50	2.994593e-48
MsaG012209	MsaG027107	0.816685	8.456119e-52	1.706184e-49
MsaG012209	MsaG027138	0.801237	1.658629e-48	2.305972e-46
MsaG012209	MsaG027159	0.800798	2.036477e-48	2.803577e-46
MsaG012209	MsaG027829	0.820454	1.192772e-52	2.655087e-50
MsaG012209	MsaG027763	0.801484	1.476674e-48	2.064593e-46
MsaG012209	MsaG027936	0.817273	6.249198e-52	1.280202e-49
MsaG012209	MsaG028135	0.842388	4.960339e-58	2.088597e-55
MsaG012209	MsaG028248	0.825304	8.950862e-54	2.270473e-51
MsaG012209	MsaG028994	0.812101	8.624926e-51	1.550547e-48
MsaG012209	MsaG029235	0.811123	1.404410e-50	2.464945e-48
MsaG012209	MsaG029370	0.834953	4.050440e-56	1.354820e-53
MsaG012209	MsaG029381	0.836403	1.746919e-56	6.103419e-54
MsaG012209	MsaG029934	0.805629	2.060046e-49	3.169157e-47
MsaG012209	MsaG030987	0.825690	7.259733e-54	1.861292e-51
MsaG012209	MsaG030996	0.807623	7.850551e-50	1.266008e-47
MsaG012209	MsaG032765	0.803760	5.036908e-49	7.419723e-47
MsaG012209	MsaG033221	0.808667	4.716256e-50	7.799505e-48
MsaG012209	MsaG033569	0.824996	1.057771e-53	2.660513e-51
MsaG012209	MsaG033690	0.855281	1.355838e-61	8.848741e-59
MsaG012209	MsaG034109	0.804425	3.667495e-49	5.486438e-47
MsaG012209	MsaG034426	0.841608	7.955743e-58	3.267296e-55
MsaG012209	MsaG034778	0.813187	5.004277e-51	9.243317e-49
MsaG012209	MsaG035127	0.804517	3.509787e-49	5.261747e-47
MsaG012209	MsaG035513	0.827227	3.136273e-54	8.392240e-52
MsaG012209	MsaG036720	0.802046	1.133933e-48	1.605776e-46
MsaG012209	MsaG038007	0.807475	8.434137e-50	1.355352e-47
MsaG012209	MsaG038422	0.800047	2.891726e-48	3.913945e-46
MsaG012209	MsaG039774	0.804263	3.962937e-49	5.906318e-47
MsaG012209	MsaG040566	0.803883	4.748424e-49	7.014778e-47
MsaG012209	MsaG041224	0.835286	3.341700e-56	1.128916e-53
MsaG012209	MsaG041982	0.824749	1.208410e-53	3.018958e-51
MsaG012209	MsaG042068	0.836021	2.182435e-56	7.537331e-54
MsaG012209	MsaG043063	0.800124	2.790289e-48	3.783109e-46
MsaG012209	MsaG043396	0.808929	4.146260e-50	6.900198e-48
MsaG012209	MsaG043815	0.803030	7.121579e-49	1.031510e-46
MsaG012209	MsaG043880	0.815151	1.853058e-51	3.595718e-49
MsaG012209	MsaG044048	0.821534	6.744137e-53	1.544737e-50
MsaG012209	MsaG044623	0.806817	1.161048e-49	1.836859e-47
MsaG012209	MsaG044728	0.800622	2.211449e-48	3.032394e-46
MsaG012209	MsaG045060	0.833958	7.184167e-56	2.332507e-53
MsaG012209	MsaG045061	0.823457	2.422346e-53	5.842614e-51
MsaG012209	MsaG045062	0.824756	1.204121e-53	3.008790e-51
MsaG012209	MsaG045200	0.864610	2.142713e-64	1.993087e-61
MsaG012209	MsaG045324	0.821901	5.552574e-53	1.284286e-50
MsaG012209	MsaG045535	0.843066	3.281920e-58	1.412216e-55
MsaG012209	MsaG046105	0.801044	1.815578e-48	2.513228e-46
MsaG012209	MsaG046113	0.826095	5.823955e-54	1.510121e-51
MsaG012209	MsaG046153	0.816359	9.995333e-52	2.000001e-49
MsaG012209	MsaG046289	0.801346	1.575313e-48	2.195675e-46
MsaG012209	MsaG046329	0.810192	2.227726e-50	3.822042e-48
MsaG012209	MsaG046436	0.807322	9.084217e-50	1.454488e-47
MsaG012209	MsaG047030	0.807695	7.577196e-50	1.224096e-47
MsaG012209	MsaG047137	0.832065	2.112787e-55	6.490763e-53
MsaG012209	MsaG002462	0.815187	1.819046e-51	3.533079e-49
MsaG012209	MsaG004076	0.801226	1.666965e-48	2.317019e-46
MsaG012209	MsaG001555	0.811035	1.467258e-50	2.569739e-48
MsaG012209	MsaG001894	0.819617	1.849866e-52	4.027195e-50
MsaG012209	MsaG000843	0.800953	1.894360e-48	2.616942e-46
MsaG012209	MsaG008983	0.808017	6.477127e-50	1.054518e-47
MsaG012209	MsaG007370	0.800429	2.419943e-48	3.303795e-46
MsaG012209	MsaG010138	0.820488	1.171140e-52	2.609294e-50
MsaG012209	MsaG007437	0.802303	1.004235e-48	1.430545e-46
MsaG012209	MsaG007261	0.843460	2.579070e-58	1.123928e-55
MsaG012209	MsaG013545	0.827154	3.264118e-54	8.716580e-52
MsaG012209	MsaG013379	0.821579	6.586362e-53	1.510361e-50
MsaG012209	MsaG018951	0.824233	1.596526e-53	3.932794e-51
MsaG012209	MsaG028390	0.837681	8.262700e-57	3.000794e-54
MsaG012209	MsaG032723	0.801173	1.709054e-48	2.372699e-46
MsaG012209	MsaG033077	0.829323	9.847858e-55	2.795171e-52
MsaG012209	MsaG033379	0.826423	4.869085e-54	1.274094e-51
MsaG012209	MsaG031602	0.828511	1.545426e-54	4.287351e-52
MsaG012209	MsaG030780	0.810454	1.957172e-50	3.379547e-48
MsaG012209	MsaG035285	0.864184	2.907966e-64	2.659449e-61
MsaG012209	MsaG036358	0.806308	1.484684e-49	2.320970e-47
MsaG012209	MsaG039380	0.808803	4.410664e-50	7.317936e-48
MsaG012209	MsaG037441	0.803167	6.673767e-49	9.697303e-47
MsaG012209	MsaG035954	0.825584	7.687903e-54	1.965229e-51
MsaG012209	MsaG035348	0.800253	2.627407e-48	3.572693e-46
MsaG012209	MsaG036119	0.808456	5.229248e-50	8.603633e-48
MsaG012209	MsaG035299	0.835360	3.201416e-56	1.083968e-53
MsaG012209	MsaG037397	0.821542	6.716471e-53	1.538727e-50
MsaG012209	MsaG045038	0.837985	6.908551e-57	2.532594e-54
MsaG012209	MsaG046905	0.828097	1.942991e-54	5.327728e-52

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012209	MtrunA17_Chr3g0079841	94.416	197	11	0	17	213	26	222	8.15e-135	380
MsaG012209	MtrunA17_Chr1g0213311	46.667	210	94	5	12	205	15	222	4.14e-51	171
MsaG012209	MtrunA17_Chr3g0143581	49.286	140	69	1	1	138	1	140	1.04e-41	140
MsaG012209	MtrunA17_Chr2g0320431	83.871	62	10	0	159	220	215	276	1.32e-25	100
MsaG012209	MtrunA17_Chr7g0214501	41.176	119	39	1	83	201	3	90	1.24e-17	80.1
MsaG012209	MtrunA17_Chr7g0214491	56.667	60	26	0	21	80	26	85	1.01e-16	73.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012209	AT3G13350.1	50.000	186	77	3	25	208	34	205	3.11e-52	171
MsaG012209	AT1G55650.1	46.277	188	81	4	26	209	29	200	2.69e-51	169
MsaG012209	AT1G04880.1	44.103	195	101	3	16	202	14	208	9.41e-48	163
MsaG012209	AT1G76110.1	47.027	185	91	4	21	201	28	209	1.97e-45	154

Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCGTGATGCTAACCTCTTC+TGG	0.176030	3:+20828061	MsaT012209.1:CDS
GGAGCAATTAGTAGGAAAAT+TGG	0.205100	3:+20830841	MsaT012209.1:CDS
GTTCAGTCTCACGCGGATTT+TGG	0.242316	3:-20827993	None:intergenic
TGTTTCAAGCAATGCATCTA+AGG	0.259440	3:+20830665	MsaT012209.1:CDS
TATCAATGATTCACCTGTTC+AGG	0.286987	3:+20829494	MsaT012209.1:CDS
AGGTAATTGTAGATCGTAAA+TGG	0.317695	3:+20829196	MsaT012209.1:intron
TGTGTAGGATTCCTACTATA+GGG	0.338046	3:+20828885	MsaT012209.1:intron
AGTGTCTGTGCTGGACTAAT+TGG	0.354657	3:-20830543	None:intergenic
GAGCAATTAGTAGGAAAATT+GGG	0.369568	3:+20830842	MsaT012209.1:CDS
CATAACAAGCGCATCATTCA+TGG	0.386953	3:+20829254	MsaT012209.1:CDS
CGTATTGGTTGTGAAGCTAT+TGG	0.406695	3:-20829460	None:intergenic
TTCATTGACTTACCCTGAAC+AGG	0.413930	3:-20829507	None:intergenic
TTGTGTAGGATTCCTACTAT+AGG	0.432421	3:+20828884	MsaT012209.1:intron
GTGATAAAGCAACGATAGAT+AGG	0.439414	3:-20829286	None:intergenic
TCGTGATGCTAACCTCTTCT+GGG	0.445073	3:+20828062	MsaT012209.1:CDS
CATGAATGATGCGCTTGTTA+TGG	0.445119	3:-20829253	None:intergenic
GAGTAGAGAGCGGTTGGAGG+AGG	0.454942	3:-20828030	None:intergenic
TCTAAGGGTTCTTCTATTGA+AGG	0.459768	3:+20830681	MsaT012209.1:CDS
ACAATTGACATGAAATTTGA+TGG	0.468681	3:+20830585	MsaT012209.1:CDS
ATATATAGTTACGGTGGACC+TGG	0.474943	3:+20830611	MsaT012209.1:CDS
GATAGCAGCACCGTCCGTAT+TGG	0.475279	3:-20829475	None:intergenic
ATCTCGTGGTGGTATTGAAA+AGG	0.485522	3:+20828949	MsaT012209.1:CDS
CTTCACTAACCAGGTGTTGA+GGG	0.490947	3:-20829345	None:intergenic
CTCTATCCAGATGCTTTGAG+TGG	0.513745	3:+20829429	MsaT012209.1:intron
CATTGCTTGAAACATGATAC+AGG	0.516873	3:-20830656	None:intergenic
ATCAATGATTCACCTGTTCA+GGG	0.519797	3:+20829495	MsaT012209.1:CDS
TTCCTACTAATTGCTCCTTG+TGG	0.533197	3:-20830835	None:intergenic
AGGTCAGAGTAGAGAGCGGT+TGG	0.533695	3:-20828036	None:intergenic
TCAGAGTAGAGAGCGGTTGG+AGG	0.537076	3:-20828033	None:intergenic
GGAAAATTGGGTTTGCGTGG+AGG	0.541228	3:+20830854	MsaT012209.1:CDS
CAATAGCTTCACAACCAATA+CGG	0.543956	3:+20829461	MsaT012209.1:CDS
TGATGGCGGATATATAGTTA+CGG	0.545231	3:+20830602	MsaT012209.1:CDS
CAAGTCCCTCCCTCAACACC+TGG	0.550783	3:+20829336	MsaT012209.1:CDS
ATTAGTCCAGCACAGACACT+TGG	0.556813	3:+20830546	MsaT012209.1:CDS
GGCCACAAGGAGCAATTAGT+AGG	0.560286	3:+20830833	MsaT012209.1:intron
GAAGAACCAAGTGTCTGTGC+TGG	0.560864	3:-20830552	None:intergenic
ATGCGCTTGTTATGGTATCT+CGG	0.562285	3:-20829245	None:intergenic
CTTCAACGAAGAGGTGATGC+AGG	0.562980	3:-20828922	None:intergenic
GTTTCAAGCAATGCATCTAA+GGG	0.563003	3:+20830666	MsaT012209.1:CDS
GTGTAGGATTCCTACTATAG+GGG	0.574437	3:+20828886	MsaT012209.1:intron
TTCGTTGAAGTAACATCTCG+TGG	0.581244	3:+20828935	MsaT012209.1:CDS
TCTTCACTAACCAGGTGTTG+AGG	0.585501	3:-20829346	None:intergenic
CTGGGTTCTGAACAGCTGAA+AGG	0.586271	3:+20830630	MsaT012209.1:CDS
GTAGGAAAATTGGGTTTGCG+TGG	0.592801	3:+20830851	MsaT012209.1:CDS
GAGCGGTTGGAGGAGGACAA+AGG	0.594063	3:-20828023	None:intergenic
CACTAACCAGGTGTTGAGGG+AGG	0.596662	3:-20829342	None:intergenic
AATTGTAGATCGTAAATGGA+AGG	0.598698	3:+20829200	MsaT012209.1:CDS
AAGAGGTGATGCAGGTCTAG+TGG	0.600590	3:-20828914	None:intergenic
ACACTTGGTTCTTCAGTGCG+TGG	0.611516	3:+20830561	MsaT012209.1:CDS
TGTAGATCGTAAATGGAAGG+AGG	0.611934	3:+20829203	MsaT012209.1:CDS
AGAGGTTAGCATCACGAACA+AGG	0.617590	3:-20828056	None:intergenic
ACTAACCAGGTGTTGAGGGA+GGG	0.618972	3:-20829341	None:intergenic
TATATAGTTACGGTGGACCT+GGG	0.620088	3:+20830612	MsaT012209.1:CDS
CTTTCAGCTGTTCAGAACCC+AGG	0.626176	3:-20830629	None:intergenic
AGCTTCACAACCAATACGGA+CGG	0.629115	3:+20829465	MsaT012209.1:CDS
TGTAGGATTCCTACTATAGG+GGG	0.629514	3:+20828887	MsaT012209.1:intron
ATTGACATGAAATTTGATGG+CGG	0.676313	3:+20830588	MsaT012209.1:CDS
AACAAGGTCAGAGTAGAGAG+CGG	0.693390	3:-20828040	None:intergenic
GAGATGTTACTTCAACGAAG+AGG	0.709606	3:-20828931	None:intergenic
TGGCGGATATATAGTTACGG+TGG	0.725652	3:+20830605	MsaT012209.1:CDS
TTTGTGAGTTCAGTCTCACG+CGG	0.743764	3:-20828000	None:intergenic
GTTGAAGTAACATCTCGTGG+TGG	0.754811	3:+20828938	MsaT012209.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	20827970	20830883	20827970	ID=MsaG012209
Chr3	mRNA	20827970	20830883	20827970	ID=MsaT012209.1;Parent=MsaG012209
Chr3	exon	20827970	20828127	20827970	ID=MsaT012209.1.exon1;Parent=MsaT012209.1
Chr3	CDS	20827970	20828127	20827970	ID=cds.MsaT012209.1;Parent=MsaT012209.1
Chr3	exon	20828892	20828970	20828892	ID=MsaT012209.1.exon2;Parent=MsaT012209.1
Chr3	CDS	20828892	20828970	20828892	ID=cds.MsaT012209.1;Parent=MsaT012209.1
Chr3	exon	20829198	20829357	20829198	ID=MsaT012209.1.exon3;Parent=MsaT012209.1
Chr3	CDS	20829198	20829357	20829198	ID=cds.MsaT012209.1;Parent=MsaT012209.1
Chr3	exon	20829439	20829516	20829439	ID=MsaT012209.1.exon4;Parent=MsaT012209.1
Chr3	CDS	20829439	20829516	20829439	ID=cds.MsaT012209.1;Parent=MsaT012209.1
Chr3	exon	20830538	20830702	20830538	ID=MsaT012209.1.exon5;Parent=MsaT012209.1
Chr3	CDS	20830538	20830702	20830538	ID=cds.MsaT012209.1;Parent=MsaT012209.1
Chr3	exon	20830834	20830883	20830834	ID=MsaT012209.1.exon6;Parent=MsaT012209.1
Chr3	CDS	20830834	20830883	20830834	ID=cds.MsaT012209.1;Parent=MsaT012209.1

Gene Sequence

>MsaT012209.1

ATGACAAGTAACCAGAATCAAAACCAAAATCCGCGTGAGACTGAACTCACAAACCTTTGTCCTCCTCCAACCGCTCTCTACTCTGACCTTGTTCGTGATGCTAACCTCTTCTGGGAAAAACTTCAATCTTTTCATGATTCGCTTGGTATCAAATTAGAGATTCCTACTATAGGGGGTAAGCCACTAGACCTGCATCACCTCTTCGTTGAAGTAACATCTCGTGGTGGTATTGAAAAGGTAATTGTAGATCGTAAATGGAAGGAGGTAATAATGAGCTTCAACTTCCGAGATACCATAACAAGCGCATCATTCATGGTGCGCAAGACCTATCTATCGTTGCTTTATCACTTTGAACAAGCGTATTATTTTCGCAAGCAAGTCCCTCCCTCAACACCTGATGCTTTGAGTGGAAACGTTGCCAATAGCTTCACAACCAATACGGACGGTGCTGCTATCAATGATTCACCTGTTCAGGTTAGTCCAATTAGTCCAGCACAGACACTTGGTTCTTCAGTGCGTGGAACAATTGACATGAAATTTGATGGCGGATATATAGTTACGGTGGACCTGGGTTCTGAACAGCTGAAAGGTGTCCTGTATCATGTTTCAAGCAATGCATCTAAGGGTTCTTCTATTGAAGGCCACAAGGAGCAATTAGTAGGAAAATTGGGTTTGCGTGGAGGAATCTGA

Protein sequence

>MsaT012209.1

MTSNQNQNQNPRETELTNLCPPPTALYSDLVRDANLFWEKLQSFHDSLGIKLEIPTIGGKPLDLHHLFVEVTSRGGIEKVIVDRKWKEVIMSFNFRDTITSASFMVRKTYLSLLYHFEQAYYFRKQVPPSTPDALSGNVANSFTTNTDGAAINDSPVQVSPISPAQTLGSSVRGTIDMKFDGGYIVTVDLGSEQLKGVLYHVSSNASKGSSIEGHKEQLVGKLGLRGGI*