AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG012222


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012222 MtrunA17_Chr3g0079691 98.174 438 6 1 196 631 267 704 0.0 900
MsaG012222 MtrunA17_Chr3g0079691 97.487 199 5 0 1 199 1 199 5.73e-129 395
MsaG012222 MtrunA17_Chr7g0249311 57.627 295 117 4 202 493 172 461 2.47e-100 320
MsaG012222 MtrunA17_Chr7g0249311 51.389 72 34 1 209 279 392 463 5.14e-14 75.5
MsaG012222 MtrunA17_Chr7g0218081 51.495 301 104 9 207 503 226 488 2.50e-85 276
MsaG012222 MtrunA17_Chr5g0445311 53.521 284 79 6 208 490 199 430 1.37e-84 275
MsaG012222 MtrunA17_Chr5g0445311 48.148 81 39 2 424 504 200 277 1.10e-13 73.9
MsaG012222 MtrunA17_Chr7g0249301 49.231 325 100 8 202 486 55 354 3.06e-84 269
MsaG012222 MtrunA17_Chr7g0249301 46.078 102 43 5 423 515 61 159 7.25e-15 77.0
MsaG012222 MtrunA17_Chr3g0101131 52.881 295 95 6 208 502 242 492 9.55e-84 274
MsaG012222 MtrunA17_Chr5g0418191 43.091 427 155 15 109 500 22 395 9.74e-84 269
MsaG012222 MtrunA17_Chr5g0418191 47.525 101 42 5 424 516 151 248 1.25e-16 82.8
MsaG012222 MtrunA17_Chr7g0243891 50.865 289 81 5 208 494 215 444 3.61e-80 263
MsaG012222 MtrunA17_Chr7g0243891 48.276 87 38 3 424 506 216 299 6.81e-16 81.3
MsaG012222 MtrunA17_Chr5g0432161 53.147 286 86 6 208 488 243 485 1.24e-79 263
MsaG012222 MtrunA17_Chr7g0263531 47.122 278 102 6 207 483 187 420 1.09e-69 233
MsaG012222 MtrunA17_Chr3g0106491 36.616 396 208 11 110 488 60 429 3.68e-52 187
MsaG012222 MtrunA17_Chr4g0004911 67.717 127 34 3 365 486 274 398 2.36e-47 174
MsaG012222 MtrunA17_Chr4g0004911 37.915 211 91 6 102 272 38 248 3.20e-27 115
MsaG012222 MtrunA17_Chr4g0004911 47.778 90 38 2 396 485 165 245 6.62e-17 84.0
MsaG012222 MtrunA17_Chr4g0004911 55.000 60 26 1 209 267 336 395 5.08e-13 71.6
MsaG012222 MtrunA17_Chr4g0042831 56.429 140 51 2 362 500 224 354 1.13e-41 155
MsaG012222 MtrunA17_Chr4g0042831 70.312 64 18 1 209 271 145 208 2.55e-23 102
MsaG012222 MtrunA17_Chr4g0042831 60.000 60 23 1 209 267 278 337 3.45e-14 74.7
MsaG012222 MtrunA17_Chr4g0042831 53.425 73 32 1 424 496 145 215 4.98e-14 74.3
MsaG012222 MtrunA17_Chr4g0074001 35.192 287 138 8 203 486 180 421 5.78e-41 156
MsaG012222 MtrunA17_Chr4g0074001 39.683 126 67 4 150 274 308 425 1.84e-17 85.9
MsaG012222 MtrunA17_Chr1g0188941 63.095 84 31 0 400 483 27 110 2.63e-34 126
MsaG012222 MtrunA17_Chr1g0188941 51.613 62 29 1 209 269 51 112 3.64e-15 72.0
MsaG012222 MtrunA17_Chr8g0335811 65.789 76 26 0 405 480 135 210 4.22e-30 118
MsaG012222 MtrunA17_Chr8g0335811 61.404 57 21 1 209 264 154 210 1.19e-16 79.7
MsaG012222 MtrunA17_Chr5g0447701 57.000 100 42 1 388 486 215 314 3.22e-29 120
MsaG012222 MtrunA17_Chr5g0447701 61.667 60 23 0 208 267 91 150 8.27e-20 92.0
MsaG012222 MtrunA17_Chr5g0447701 51.429 70 31 2 210 278 253 320 9.69e-14 73.6
MsaG012222 MtrunA17_Chr5g0447701 50.000 64 31 1 422 485 90 152 1.98e-11 66.2
MsaG012222 MtrunA17_Chr7g0270191 60.465 86 34 0 408 493 129 214 4.04e-28 114
MsaG012222 MtrunA17_Chr7g0270191 57.353 68 28 1 209 275 145 212 2.22e-17 83.2
MsaG012222 MtrunA17_Chr2g0294231 65.385 78 27 0 408 485 187 264 1.23e-27 115
MsaG012222 MtrunA17_Chr2g0294231 57.812 64 26 1 209 271 203 266 4.41e-17 83.6
MsaG012222 MtrunA17_Chr3g0129361 62.162 74 28 0 407 480 127 200 1.38e-27 110
MsaG012222 MtrunA17_Chr3g0129361 56.140 57 24 1 209 264 144 200 1.34e-14 73.6
MsaG012222 MtrunA17_Chr4g0051881 64.474 76 27 0 410 485 164 239 1.88e-27 114
MsaG012222 MtrunA17_Chr4g0051881 64.062 64 22 1 209 271 178 241 8.96e-19 88.2
MsaG012222 MtrunA17_Chr5g0418781 64.474 76 27 0 405 480 105 180 4.04e-27 111
MsaG012222 MtrunA17_Chr5g0418781 64.912 57 19 1 209 264 124 180 5.27e-17 81.6
MsaG012222 MtrunA17_Chr1g0194481 59.756 82 33 0 408 489 142 223 2.25e-26 110
MsaG012222 MtrunA17_Chr1g0194481 54.054 74 33 1 209 281 158 231 1.55e-18 87.0
MsaG012222 MtrunA17_Chr8g0383351 61.333 75 28 1 407 480 142 216 4.17e-26 107
MsaG012222 MtrunA17_Chr8g0383351 56.140 57 24 1 209 264 160 216 8.41e-15 74.3
MsaG012222 MtrunA17_Chr5g0443131 60.526 76 30 0 410 485 143 218 9.29e-26 108
MsaG012222 MtrunA17_Chr5g0443131 59.375 64 25 1 209 271 157 220 6.98e-17 82.0
MsaG012222 MtrunA17_Chr8g0383251 50.000 88 44 0 411 498 95 182 2.56e-25 103
MsaG012222 MtrunA17_Chr8g0383251 46.667 75 39 1 209 282 108 182 2.22e-12 66.2
MsaG012222 MtrunA17_Chr1g0150801 56.627 83 34 1 400 480 76 158 3.15e-25 102
MsaG012222 MtrunA17_Chr1g0150801 51.724 58 27 1 209 265 102 159 1.16e-13 69.3
MsaG012222 MtrunA17_Chr7g0224801 64.706 68 24 0 415 482 84 151 7.39e-25 101
MsaG012222 MtrunA17_Chr7g0224801 53.448 58 26 1 209 265 93 150 1.42e-15 75.1
MsaG012222 MtrunA17_Chr4g0075201 48.039 102 52 1 385 485 228 329 5.12e-24 105
MsaG012222 MtrunA17_Chr4g0075201 52.459 61 27 2 210 268 268 328 8.60e-14 74.3
MsaG012222 MtrunA17_Chr8g0386241 49.495 99 48 1 390 488 71 167 9.99e-24 98.6
MsaG012222 MtrunA17_Chr8g0386241 51.724 58 27 1 209 265 103 160 1.04e-14 72.8
MsaG012222 MtrunA17_Chr7g0248721 48.598 107 48 2 374 480 97 196 1.46e-23 99.4
MsaG012222 MtrunA17_Chr7g0248721 60.345 58 21 2 209 265 141 197 1.61e-15 76.3
MsaG012222 MtrunA17_Chr2g0288871 38.411 151 86 2 340 483 215 365 2.91e-23 104
MsaG012222 MtrunA17_Chr2g0288871 54.098 61 26 2 210 268 306 366 2.92e-14 75.9
MsaG012222 MtrunA17_Chr3g0129321 48.387 93 48 0 410 502 104 196 3.47e-23 97.8
MsaG012222 MtrunA17_Chr3g0129321 55.000 60 26 1 209 267 118 177 3.08e-14 72.0
MsaG012222 MtrunA17_Chr7g0270831 50.000 92 44 2 407 496 199 290 3.93e-23 102
MsaG012222 MtrunA17_Chr7g0270831 54.098 61 26 2 210 268 217 277 7.68e-14 73.9
MsaG012222 MtrunA17_Chr1g0189391 42.143 140 71 5 368 499 36 173 4.63e-23 100
MsaG012222 MtrunA17_Chr2g0322391 53.571 84 38 1 403 485 328 411 1.42e-22 102
MsaG012222 MtrunA17_Chr2g0322391 42.683 82 44 3 210 289 350 430 4.09e-12 69.3
MsaG012222 MtrunA17_Chr4g0068541 52.381 84 40 0 408 491 192 275 1.64e-22 100
MsaG012222 MtrunA17_Chr4g0068541 52.174 69 32 1 209 276 208 276 1.44e-15 79.3
MsaG012222 MtrunA17_Chr3g0099641 52.564 78 36 1 407 483 234 311 3.19e-22 100
MsaG012222 MtrunA17_Chr3g0099641 42.683 82 44 3 210 289 252 332 1.34e-13 73.6
MsaG012222 MtrunA17_Chr4g0051181 55.128 78 34 1 408 484 227 304 4.53e-22 100
MsaG012222 MtrunA17_Chr4g0051181 51.667 60 27 2 210 267 244 303 5.57e-12 68.6
MsaG012222 MtrunA17_Chr2g0302391 30.894 246 136 9 291 510 62 299 1.66e-21 97.8
MsaG012222 MtrunA17_Chr2g0302391 46.875 64 32 2 210 271 212 275 4.81e-12 68.6
MsaG012222 MtrunA17_Chr4g0060271 51.948 77 36 1 408 483 239 315 3.69e-21 97.8
MsaG012222 MtrunA17_Chr4g0060271 46.667 75 37 3 196 267 241 315 7.36e-12 68.6
MsaG012222 MtrunA17_Chr6g0485431 38.732 142 75 3 354 483 73 214 4.52e-21 95.5
MsaG012222 MtrunA17_Chr6g0485431 46.154 65 33 2 210 272 155 219 2.21e-11 65.9
MsaG012222 MtrunA17_Chr4g0025061 48.315 89 45 1 398 485 334 422 4.70e-21 97.4
MsaG012222 MtrunA17_Chr4g0025061 43.750 64 34 2 210 271 361 424 8.16e-11 65.1
MsaG012222 MtrunA17_Chr5g0432071 60.938 64 25 0 209 272 104 167 5.61e-21 91.7
MsaG012222 MtrunA17_Chr5g0432071 53.226 62 28 1 424 485 104 164 6.52e-14 71.2
MsaG012222 MtrunA17_Chr4g0053281 48.864 88 41 2 405 491 250 334 2.69e-20 92.8
MsaG012222 MtrunA17_Chr4g0053281 50.877 57 26 2 210 264 267 323 1.16e-11 66.6
MsaG012222 MtrunA17_Chr1g0147881 52.439 82 38 1 405 485 243 324 7.54e-20 91.3
MsaG012222 MtrunA17_Chr1g0147881 47.143 70 32 3 200 264 250 319 6.35e-12 67.4
MsaG012222 MtrunA17_Chr7g0216891 45.263 95 47 2 395 488 194 284 8.26e-20 93.6
MsaG012222 MtrunA17_Chr7g0216891 51.724 58 26 2 210 265 220 277 3.68e-11 66.2
MsaG012222 MtrunA17_Chr5g0447711 45.161 93 48 1 401 490 204 296 8.93e-20 90.5
MsaG012222 MtrunA17_Chr5g0447711 50.847 59 29 0 209 267 83 141 4.63e-14 73.6
MsaG012222 MtrunA17_Chr4g0025051 52.632 76 35 1 411 485 322 397 3.04e-19 91.7
MsaG012222 MtrunA17_Chr7g0238921 63.158 57 21 0 424 480 124 180 4.80e-19 88.6
MsaG012222 MtrunA17_Chr7g0238921 51.429 70 33 1 200 268 115 184 1.02e-13 72.8
MsaG012222 MtrunA17_Chr5g0401821 47.368 95 39 2 389 482 174 258 9.27e-19 86.7
MsaG012222 MtrunA17_Chr5g0401821 50.877 57 26 2 210 264 200 256 7.19e-11 63.5
MsaG012222 MtrunA17_Chr2g0333851 42.553 94 38 2 407 484 137 230 2.80e-18 86.3
MsaG012222 MtrunA17_Chr2g0333851 49.180 61 29 2 209 267 169 229 4.90e-12 67.4
MsaG012222 MtrunA17_Chr3g0136961 52.055 73 32 2 411 480 123 195 3.60e-18 85.5
MsaG012222 MtrunA17_Chr3g0136961 50.000 62 29 2 205 264 134 195 3.06e-12 67.8
MsaG012222 MtrunA17_Chr4g0071521 48.387 93 37 3 389 480 220 302 4.73e-18 85.5
MsaG012222 MtrunA17_Chr4g0071521 48.438 64 30 3 203 264 240 302 1.82e-11 65.9
MsaG012222 MtrunA17_Chr1g0150271 46.575 73 38 1 412 483 89 161 1.29e-16 80.1
MsaG012222 MtrunA17_Chr2g0284321 53.030 66 29 2 206 269 32 97 1.35e-16 79.3
MsaG012222 MtrunA17_Chr2g0284321 43.243 74 41 1 425 497 36 109 8.09e-14 71.2
MsaG012222 MtrunA17_Chr4g0001361 53.968 63 28 1 422 483 160 222 1.96e-16 80.9
MsaG012222 MtrunA17_Chr4g0001361 50.000 66 31 2 205 268 158 223 4.46e-14 73.6
MsaG012222 MtrunA17_Chr1g0184691 49.351 77 38 1 405 480 274 350 2.68e-16 80.9
MsaG012222 MtrunA17_Chr1g0184691 45.946 74 35 3 200 268 281 354 3.58e-12 68.6
MsaG012222 MtrunA17_Chr4g0024391 37.838 111 66 2 378 485 181 291 3.11e-16 82.0
MsaG012222 MtrunA17_Chr7g0270051 53.030 66 30 1 425 489 54 119 8.48e-16 77.8
MsaG012222 MtrunA17_Chr7g0270051 53.846 65 27 3 205 267 50 113 1.96e-13 70.9
MsaG012222 MtrunA17_Chr6g0468181 52.113 71 34 0 225 295 18 88 1.56e-15 73.2
MsaG012222 MtrunA17_Chr1g0150281 46.575 73 36 2 411 480 125 197 1.70e-15 77.4
MsaG012222 MtrunA17_Chr1g0150281 38.318 107 60 4 210 312 141 245 5.44e-12 67.0
MsaG012222 MtrunA17_Chr8g0379461 42.466 73 41 1 425 496 77 149 2.07e-15 76.3
MsaG012222 MtrunA17_Chr8g0379461 37.838 111 54 4 202 304 69 172 7.95e-15 74.7
MsaG012222 MtrunA17_Chr7g0228941 46.479 71 37 1 411 480 39 109 2.56e-15 72.8
MsaG012222 MtrunA17_Chr7g0228941 47.368 57 28 2 210 264 53 109 1.44e-12 65.1
MsaG012222 MtrunA17_Chr2g0289181 48.611 72 35 2 209 278 14 85 3.18e-15 75.5
MsaG012222 MtrunA17_Chr2g0289181 45.946 74 39 1 413 485 3 76 1.95e-14 73.2
MsaG012222 MtrunA17_Chr3g0139021 40.196 102 55 2 381 481 276 372 4.36e-15 77.8
MsaG012222 MtrunA17_Chr3g0139021 45.902 61 31 2 210 268 315 375 7.42e-11 64.7
MsaG012222 MtrunA17_Chr8g0387501 48.780 82 36 5 200 278 121 199 7.21e-15 75.5
MsaG012222 MtrunA17_Chr8g0387501 49.254 67 33 1 423 488 128 194 1.19e-14 74.7
MsaG012222 MtrunA17_Chr1g0202461 42.353 85 47 2 405 488 243 326 1.01e-14 76.6
MsaG012222 MtrunA17_Chr1g0202461 50.685 73 33 3 208 278 260 331 3.58e-13 71.6
MsaG012222 MtrunA17_Chr2g0319961 48.438 64 32 1 425 487 81 144 3.11e-14 73.2
MsaG012222 MtrunA17_Chr2g0319961 49.231 65 31 2 207 269 78 142 8.11e-12 66.2
MsaG012222 MtrunA17_Chr5g0419241 45.588 68 37 0 385 452 38 105 3.93e-14 68.9
MsaG012222 MtrunA17_Chr1g0188961 65.957 47 16 0 444 490 3 49 4.33e-14 67.4
MsaG012222 MtrunA17_Chr8g0348311 50.769 65 31 1 425 488 156 220 6.39e-14 73.6
MsaG012222 MtrunA17_Chr8g0348311 49.315 73 34 3 208 278 154 225 4.05e-11 65.1
MsaG012222 MtrunA17_Chr2g0293481 47.692 65 33 1 425 488 268 332 7.86e-14 74.3
MsaG012222 MtrunA17_Chr2g0293481 41.489 94 49 4 210 298 268 360 2.88e-12 69.3
MsaG012222 MtrunA17_Chr8g0387981 55.000 60 23 2 207 262 130 189 1.20e-13 72.8
MsaG012222 MtrunA17_Chr7g0248691 49.231 65 32 1 425 488 155 219 1.31e-13 72.4
MsaG012222 MtrunA17_Chr7g0248691 44.156 77 37 3 197 267 138 214 2.60e-11 65.5
MsaG012222 MtrunA17_Chr4g0009881 50.847 59 28 1 209 267 17 74 3.25e-13 66.6
MsaG012222 MtrunA17_Chr3g0126391 53.333 60 24 2 207 262 131 190 3.90e-13 71.2
MsaG012222 MtrunA17_Chr3g0126391 34.513 113 62 3 423 527 132 240 5.54e-12 67.8
MsaG012222 MtrunA17_Chr8g0347251 51.724 58 24 2 209 262 136 193 3.12e-12 68.6
MsaG012222 MtrunA17_Chr1g0188971 41.096 73 41 1 374 444 10 82 3.34e-12 62.8
MsaG012222 MtrunA17_Chr7g0275531 44.286 70 33 3 209 272 118 187 7.59e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012222 AT4G26440.1 45.763 649 244 21 1 625 1 565 5.48e-151 448
MsaG012222 AT5G56270.1 55.928 447 146 14 203 626 267 685 1.96e-127 391
MsaG012222 AT5G56270.1 50.746 201 81 8 1 195 1 189 3.63e-41 159
MsaG012222 AT4G26640.5 52.414 290 88 6 204 489 27 270 1.42e-83 268
MsaG012222 AT4G26640.6 52.414 290 88 6 204 489 27 270 1.42e-83 268
MsaG012222 AT4G26640.4 52.414 290 88 6 204 489 27 270 1.42e-83 268
MsaG012222 AT4G26640.3 52.414 290 88 6 204 489 27 270 1.42e-83 268
MsaG012222 AT4G26640.7 52.414 290 88 6 204 489 163 406 4.65e-83 270
MsaG012222 AT4G26640.1 52.414 290 88 6 204 489 131 374 4.90e-83 270
MsaG012222 AT4G26640.2 52.414 290 88 6 204 489 203 446 1.16e-82 271
MsaG012222 AT2G38470.1 51.203 291 97 4 209 495 184 433 2.95e-81 266
MsaG012222 AT1G13960.1 40.806 397 176 11 104 483 114 468 6.67e-79 259
MsaG012222 AT2G03340.1 40.876 411 154 11 113 490 127 481 1.88e-78 258
MsaG012222 AT2G03340.1 48.980 98 47 3 424 519 250 346 2.07e-16 83.2
MsaG012222 AT1G13960.2 47.857 280 105 6 207 483 74 315 3.35e-72 237
MsaG012222 AT2G37260.2 46.032 315 108 12 188 480 49 323 6.68e-60 204
MsaG012222 AT2G37260.2 52.055 73 30 2 425 493 84 155 2.63e-14 75.1
MsaG012222 AT2G37260.3 46.032 315 108 12 188 480 51 325 7.36e-60 204
MsaG012222 AT2G37260.3 52.055 73 30 2 425 493 86 157 2.58e-14 75.1
MsaG012222 AT2G37260.1 46.032 315 108 12 188 480 131 405 1.71e-59 205
MsaG012222 AT2G37260.1 52.055 73 30 2 425 493 166 237 3.68e-14 75.5
MsaG012222 AT5G07100.2 68.519 108 25 1 379 486 105 203 1.78e-42 152
MsaG012222 AT5G07100.2 64.000 75 26 1 208 281 23 97 1.67e-24 102
MsaG012222 AT5G07100.2 45.882 85 44 1 424 506 24 108 3.77e-15 75.5
MsaG012222 AT5G07100.2 54.688 64 28 1 209 271 141 204 5.13e-14 72.0
MsaG012222 AT5G07100.4 68.519 108 25 1 379 486 105 203 1.78e-42 152
MsaG012222 AT5G07100.4 64.000 75 26 1 208 281 23 97 1.67e-24 102
MsaG012222 AT5G07100.4 45.882 85 44 1 424 506 24 108 3.77e-15 75.5
MsaG012222 AT5G07100.4 54.688 64 28 1 209 271 141 204 5.13e-14 72.0
MsaG012222 AT5G07100.5 68.519 108 25 1 379 486 105 203 1.78e-42 152
MsaG012222 AT5G07100.5 64.000 75 26 1 208 281 23 97 1.67e-24 102
MsaG012222 AT5G07100.5 45.882 85 44 1 424 506 24 108 3.77e-15 75.5
MsaG012222 AT5G07100.5 54.688 64 28 1 209 271 141 204 5.13e-14 72.0
MsaG012222 AT5G07100.3 68.519 108 25 1 379 486 105 203 1.78e-42 152
MsaG012222 AT5G07100.3 64.000 75 26 1 208 281 23 97 1.67e-24 102
MsaG012222 AT5G07100.3 45.882 85 44 1 424 506 24 108 3.77e-15 75.5
MsaG012222 AT5G07100.3 54.688 64 28 1 209 271 141 204 5.13e-14 72.0
MsaG012222 AT5G07100.1 68.519 108 25 1 379 486 198 296 4.70e-42 154
MsaG012222 AT5G07100.1 43.931 173 84 4 112 281 28 190 6.97e-34 132
MsaG012222 AT5G07100.1 34.899 149 78 3 371 506 59 201 5.80e-16 79.7
MsaG012222 AT5G07100.1 54.688 64 28 1 209 271 234 297 6.36e-14 73.6
MsaG012222 AT4G30935.1 36.678 289 127 9 200 486 159 393 1.93e-41 157
MsaG012222 AT4G30935.1 56.061 66 28 1 210 274 332 397 1.13e-16 83.6
MsaG012222 AT4G12020.3 39.662 237 97 7 210 444 469 661 3.10e-40 159
MsaG012222 AT4G12020.3 41.304 92 43 2 423 504 467 557 3.54e-12 70.5
MsaG012222 AT4G12020.10 39.662 237 97 7 210 444 469 661 3.43e-40 159
MsaG012222 AT4G12020.10 41.304 92 43 2 423 504 467 557 3.51e-12 70.5
MsaG012222 AT4G12020.6 39.662 237 97 7 210 444 469 661 3.81e-40 158
MsaG012222 AT4G12020.6 41.304 92 43 2 423 504 467 557 3.91e-12 70.5
MsaG012222 AT4G12020.8 39.662 237 97 7 210 444 469 661 3.81e-40 158
MsaG012222 AT4G12020.8 41.304 92 43 2 423 504 467 557 3.91e-12 70.5
MsaG012222 AT4G12020.1 39.662 237 97 7 210 444 469 661 3.90e-40 158
MsaG012222 AT4G12020.1 41.304 92 43 2 423 504 467 557 3.79e-12 70.5
MsaG012222 AT4G12020.9 39.662 237 97 7 210 444 469 661 3.90e-40 158
MsaG012222 AT4G12020.9 41.304 92 43 2 423 504 467 557 3.79e-12 70.5
MsaG012222 AT4G12020.7 39.662 237 97 7 210 444 469 661 4.00e-40 158
MsaG012222 AT4G12020.7 41.304 92 43 2 423 504 467 557 3.79e-12 70.5
MsaG012222 AT4G12020.2 39.662 237 97 7 210 444 469 661 4.05e-40 158
MsaG012222 AT4G12020.2 41.304 92 43 2 423 504 467 557 3.80e-12 70.5
MsaG012222 AT4G12020.4 39.662 237 97 7 210 444 469 661 4.43e-40 158
MsaG012222 AT4G12020.4 41.304 92 43 2 423 504 467 557 3.73e-12 70.5
MsaG012222 AT4G12020.5 39.662 237 97 7 210 444 402 594 5.34e-40 158
MsaG012222 AT4G12020.5 41.304 92 43 2 423 504 400 490 4.04e-12 70.5
MsaG012222 AT4G12020.11 39.662 237 97 7 210 444 469 661 8.06e-40 157
MsaG012222 AT4G12020.11 41.304 92 43 2 423 504 467 557 5.85e-12 69.7
MsaG012222 AT3G01080.1 71.579 95 24 1 389 483 274 365 7.54e-39 149
MsaG012222 AT3G01080.1 72.857 70 18 1 207 276 165 233 4.60e-27 114
MsaG012222 AT3G01080.1 55.556 63 27 1 424 486 167 228 2.52e-14 75.9
MsaG012222 AT3G01080.1 58.333 60 24 1 209 267 306 365 3.83e-14 75.5
MsaG012222 AT3G01080.2 71.579 95 24 1 389 483 312 403 8.65e-39 149
MsaG012222 AT3G01080.2 72.857 70 18 1 207 276 203 271 4.58e-27 115
MsaG012222 AT3G01080.2 55.556 63 27 1 424 486 205 266 2.01e-14 76.6
MsaG012222 AT3G01080.2 58.333 60 24 1 209 267 344 403 2.67e-14 76.3
MsaG012222 AT2G30250.1 66.265 83 28 0 403 485 307 389 2.12e-34 135
MsaG012222 AT2G30250.1 67.692 65 21 0 208 272 165 229 6.12e-22 99.0
MsaG012222 AT2G30250.1 56.923 65 27 1 210 273 329 393 5.14e-14 74.7
MsaG012222 AT2G30250.1 47.561 82 37 2 402 483 149 224 2.05e-12 69.7
MsaG012222 AT2G04880.2 57.692 104 44 0 389 492 248 351 5.16e-33 132
MsaG012222 AT2G04880.2 48.913 92 47 0 176 267 78 169 2.28e-20 95.1
MsaG012222 AT2G04880.2 51.220 82 35 2 210 290 284 361 3.91e-17 85.1
MsaG012222 AT2G04880.2 36.036 111 64 3 422 527 109 217 4.45e-14 75.5
MsaG012222 AT2G04880.1 57.692 104 44 0 389 492 272 375 8.52e-33 132
MsaG012222 AT2G04880.1 48.913 92 47 0 176 267 78 169 2.42e-20 95.1
MsaG012222 AT2G04880.1 51.220 82 35 2 210 290 308 385 4.15e-17 85.1
MsaG012222 AT2G04880.1 50.000 64 31 1 422 485 109 171 6.43e-13 72.0
MsaG012222 AT2G44745.1 62.353 85 31 1 405 489 126 209 6.75e-31 120
MsaG012222 AT2G44745.1 61.404 57 21 1 209 264 145 201 1.02e-16 80.1
MsaG012222 AT1G55600.1 61.628 86 33 0 400 485 283 368 2.19e-29 122
MsaG012222 AT1G55600.1 58.333 60 24 1 210 268 308 367 2.86e-15 79.3
MsaG012222 AT4G18170.1 50.435 115 46 1 381 484 118 232 1.36e-28 117
MsaG012222 AT4G18170.1 63.333 60 21 1 209 267 172 231 7.24e-17 82.4
MsaG012222 AT4G39410.1 48.462 130 50 3 373 497 184 301 1.91e-28 116
MsaG012222 AT4G39410.1 52.632 57 26 1 209 264 223 279 8.43e-13 70.1
MsaG012222 AT1G69310.4 62.195 82 31 0 399 480 122 203 2.60e-28 115
MsaG012222 AT1G69310.4 61.404 57 21 1 209 264 147 203 7.13e-16 79.0
MsaG012222 AT1G69310.2 62.195 82 31 0 399 480 122 203 2.60e-28 115
MsaG012222 AT1G69310.2 61.404 57 21 1 209 264 147 203 7.13e-16 79.0
MsaG012222 AT1G69310.1 62.195 82 31 0 399 480 122 203 2.60e-28 115
MsaG012222 AT1G69310.1 61.404 57 21 1 209 264 147 203 7.13e-16 79.0
MsaG012222 AT3G01080.3 72.857 70 18 1 207 276 203 271 3.65e-28 115
MsaG012222 AT3G01080.3 55.556 63 27 1 424 486 205 266 4.72e-15 77.0
MsaG012222 AT1G29860.1 62.821 78 29 0 408 485 120 197 2.98e-27 112
MsaG012222 AT1G29860.1 60.938 64 24 1 209 271 136 199 2.82e-17 83.2
MsaG012222 AT2G47260.1 63.158 76 28 0 408 483 158 233 3.12e-26 110
MsaG012222 AT2G47260.1 57.812 64 26 1 209 271 174 237 8.40e-16 79.7
MsaG012222 AT5G13080.1 48.544 103 53 0 383 485 26 128 3.52e-26 105
MsaG012222 AT5G13080.1 51.724 58 27 1 209 265 67 124 1.35e-14 72.0
MsaG012222 AT5G46350.1 58.750 80 33 0 410 489 169 248 9.07e-26 108
MsaG012222 AT5G46350.1 57.143 70 28 2 209 277 183 251 4.94e-17 83.2
MsaG012222 AT3G01970.1 65.278 72 25 0 411 482 52 123 2.01e-25 102
MsaG012222 AT3G01970.1 53.125 64 27 2 209 270 65 127 5.69e-14 70.1
MsaG012222 AT5G49520.1 61.842 76 29 0 408 483 205 280 2.92e-25 108
MsaG012222 AT5G49520.1 60.000 60 23 1 209 267 221 280 1.14e-15 80.1
MsaG012222 AT5G26170.1 61.429 70 27 0 411 480 100 169 1.03e-24 101
MsaG012222 AT5G26170.1 52.632 57 26 1 209 264 113 169 1.72e-14 72.4
MsaG012222 AT5G41570.1 57.895 76 32 0 405 480 79 154 2.01e-24 101
MsaG012222 AT5G41570.1 53.448 58 26 1 209 265 98 155 6.70e-15 73.6
MsaG012222 AT5G64810.1 57.746 71 30 0 411 481 97 167 2.29e-24 101
MsaG012222 AT5G64810.1 49.123 57 28 1 209 264 110 166 5.43e-11 62.8
MsaG012222 AT4G04450.2 54.545 88 39 1 399 485 173 260 2.31e-24 106
MsaG012222 AT4G04450.2 54.098 61 26 2 210 268 199 259 3.32e-14 75.5
MsaG012222 AT2G46130.1 55.000 80 36 0 401 480 7 86 6.03e-24 97.4
MsaG012222 AT2G46130.1 63.793 58 20 1 209 265 30 87 1.39e-18 82.0
MsaG012222 AT4G04450.1 54.545 88 39 1 399 485 267 354 8.60e-24 105
MsaG012222 AT4G04450.1 54.098 61 26 2 210 268 293 353 5.49e-14 75.5
MsaG012222 AT1G64000.1 56.579 76 33 0 405 480 95 170 9.26e-24 99.8
MsaG012222 AT1G64000.1 53.448 58 26 1 209 265 114 171 1.82e-15 75.9
MsaG012222 AT1G69310.3 58.537 82 30 1 399 480 122 199 1.26e-23 101
MsaG012222 AT1G69310.3 56.140 57 20 2 209 264 147 199 2.28e-11 65.5
MsaG012222 AT4G22070.4 53.488 86 39 1 399 483 272 357 3.46e-23 104
MsaG012222 AT4G22070.4 54.098 61 26 2 210 268 298 358 4.89e-14 75.5
MsaG012222 AT4G22070.3 53.488 86 39 1 399 483 272 357 3.46e-23 104
MsaG012222 AT4G22070.3 54.098 61 26 2 210 268 298 358 4.89e-14 75.5
MsaG012222 AT4G22070.2 53.488 86 39 1 399 483 272 357 3.46e-23 104
MsaG012222 AT4G22070.2 54.098 61 26 2 210 268 298 358 4.89e-14 75.5
MsaG012222 AT4G22070.1 53.488 86 39 1 399 483 272 357 3.46e-23 104
MsaG012222 AT4G22070.1 54.098 61 26 2 210 268 298 358 4.89e-14 75.5
MsaG012222 AT3G62340.1 50.943 106 48 1 400 501 94 199 8.83e-23 99.0
MsaG012222 AT3G62340.1 56.667 60 25 1 209 267 118 177 7.97e-15 75.9
MsaG012222 AT1G62300.1 54.878 82 36 1 403 483 291 372 1.95e-22 102
MsaG012222 AT1G62300.1 54.098 61 26 2 210 268 313 373 3.66e-14 76.3
MsaG012222 AT1G68150.1 50.000 90 44 1 408 496 219 308 3.94e-22 99.4
MsaG012222 AT1G68150.1 53.333 60 26 2 210 267 236 295 1.77e-12 69.7
MsaG012222 AT5G15130.2 46.067 89 47 1 401 488 162 250 5.43e-22 100
MsaG012222 AT5G15130.1 46.067 89 47 1 401 488 204 292 6.23e-22 100
MsaG012222 AT1G18860.1 52.564 78 36 1 407 483 222 299 1.81e-21 99.0
MsaG012222 AT1G18860.1 53.333 60 26 2 210 267 240 299 3.84e-12 69.7
MsaG012222 AT4G01720.1 54.545 77 34 1 408 483 223 299 1.42e-20 95.9
MsaG012222 AT4G01720.1 45.570 79 41 2 192 268 222 300 1.60e-13 73.9
MsaG012222 AT2G21900.1 41.509 106 47 3 384 485 76 170 1.03e-19 88.2
MsaG012222 AT2G21900.1 50.000 60 29 1 209 267 109 168 7.23e-13 68.6
MsaG012222 AT2G23320.1 47.368 95 39 3 389 482 215 299 1.87e-19 90.1
MsaG012222 AT2G23320.1 47.143 70 32 3 200 264 228 297 4.37e-12 68.2
MsaG012222 AT4G24240.1 49.474 95 37 3 389 482 256 340 2.64e-19 90.5
MsaG012222 AT4G24240.1 45.714 70 33 3 200 264 269 338 2.08e-11 66.2
MsaG012222 AT5G28650.1 39.231 130 68 3 362 490 210 329 3.84e-19 89.4
MsaG012222 AT5G28650.1 44.444 72 35 3 200 266 250 321 3.52e-11 65.5
MsaG012222 AT2G46130.2 51.250 80 35 1 401 480 7 82 1.39e-18 82.0
MsaG012222 AT2G46130.2 58.621 58 19 2 209 265 30 83 1.21e-13 67.8
MsaG012222 AT3G04670.1 44.660 103 46 3 389 490 237 329 1.95e-18 87.4
MsaG012222 AT3G04670.1 44.444 72 35 3 200 266 250 321 5.24e-11 65.1
MsaG012222 AT4G31550.1 47.059 102 50 2 395 492 217 318 2.45e-18 87.0
MsaG012222 AT4G31550.1 45.714 70 33 3 200 264 234 303 3.74e-11 65.5
MsaG012222 AT2G24570.1 43.636 110 59 2 395 503 214 321 4.21e-18 86.3
MsaG012222 AT2G24570.1 47.143 70 32 3 200 264 231 300 2.12e-11 66.2
MsaG012222 AT1G80840.1 51.562 64 30 1 422 484 144 207 4.73e-18 85.9
MsaG012222 AT1G80840.1 50.820 61 28 2 209 267 146 206 2.39e-12 68.6
MsaG012222 AT4G31550.2 51.087 92 41 2 405 492 226 317 5.18e-18 85.9
MsaG012222 AT4G31550.2 45.714 70 33 3 200 264 233 302 3.78e-11 65.5
MsaG012222 AT5G43290.1 59.322 59 24 0 422 480 112 170 6.66e-18 84.7
MsaG012222 AT5G43290.1 58.621 58 23 1 208 264 113 170 9.73e-13 69.3
MsaG012222 AT2G30590.1 34.965 143 79 4 339 480 241 370 9.60e-18 85.9
MsaG012222 AT2G30590.1 48.649 74 33 3 200 268 301 374 1.34e-13 73.6
MsaG012222 AT4G23550.1 46.753 77 40 1 413 488 129 205 1.09e-17 84.7
MsaG012222 AT4G23550.1 49.296 71 33 3 210 278 141 210 3.97e-11 65.1
MsaG012222 AT1G69810.2 43.158 95 50 3 407 499 128 220 4.46e-17 83.2
MsaG012222 AT1G69810.2 40.698 86 47 3 197 278 132 217 1.11e-11 67.0
MsaG012222 AT1G69810.1 43.158 95 50 3 407 499 186 278 7.15e-17 83.6
MsaG012222 AT1G69810.1 40.698 86 47 3 197 278 190 275 9.89e-12 67.8
MsaG012222 AT2G25000.2 45.205 73 39 1 423 494 102 174 8.30e-17 80.5
MsaG012222 AT2G25000.2 49.180 61 29 2 209 267 103 163 3.37e-11 63.9
MsaG012222 AT2G25000.4 45.205 73 39 1 423 494 102 174 8.30e-17 80.5
MsaG012222 AT2G25000.4 49.180 61 29 2 209 267 103 163 3.37e-11 63.9
MsaG012222 AT2G25000.3 45.205 73 39 1 423 494 124 196 1.47e-16 80.5
MsaG012222 AT2G25000.3 49.180 61 29 2 209 267 125 185 5.68e-11 63.9
MsaG012222 AT2G25000.1 45.205 73 39 1 423 494 145 217 2.47e-16 80.1
MsaG012222 AT2G25000.1 49.180 61 29 2 209 267 146 206 8.10e-11 63.5
MsaG012222 AT4G31800.2 50.000 64 31 1 423 485 110 173 5.56e-16 78.6
MsaG012222 AT4G31800.2 47.541 61 30 2 209 267 111 171 7.93e-12 66.2
MsaG012222 AT4G31800.1 50.000 64 31 1 423 485 175 238 1.02e-15 79.0
MsaG012222 AT4G31800.1 47.541 61 30 2 209 267 176 236 1.11e-11 66.6
MsaG012222 AT4G01250.1 41.748 103 44 2 387 488 106 193 1.71e-15 78.2
MsaG012222 AT4G01250.1 47.887 71 34 3 210 278 129 198 1.81e-11 65.9
MsaG012222 AT5G52830.1 43.529 85 46 2 405 488 147 230 6.51e-15 77.0
MsaG012222 AT5G52830.1 50.685 73 33 3 208 278 164 235 5.49e-13 71.2
MsaG012222 AT1G29280.1 51.562 64 29 2 206 267 71 134 2.89e-14 73.6
MsaG012222 AT1G29280.1 47.692 65 33 1 425 488 75 139 5.67e-14 72.8
MsaG012222 AT1G30650.1 38.000 100 56 2 390 488 188 282 8.01e-14 74.3
MsaG012222 AT1G30650.1 50.000 60 28 2 210 267 218 277 2.48e-11 66.6
MsaG012222 AT2G34830.1 38.000 100 56 2 390 488 186 280 8.25e-14 74.3
MsaG012222 AT2G34830.1 51.667 60 27 2 210 267 216 275 8.74e-12 68.2
MsaG012222 AT2G34830.2 38.000 100 56 2 390 488 195 289 9.49e-14 74.3
MsaG012222 AT2G34830.2 51.667 60 27 2 210 267 225 284 8.96e-12 68.2
MsaG012222 AT2G40740.1 43.038 79 40 3 207 280 171 249 1.01e-13 72.8
MsaG012222 AT2G40740.3 43.038 79 40 3 207 280 180 258 1.30e-13 72.4
MsaG012222 AT3G58710.2 47.826 69 33 2 425 490 71 139 4.10e-13 70.5
MsaG012222 AT3G58710.2 52.381 63 28 2 207 267 68 130 1.56e-12 68.9
MsaG012222 AT3G58710.1 48.387 62 31 1 425 485 72 133 4.19e-13 70.5
MsaG012222 AT3G58710.1 52.381 63 28 2 207 267 69 131 1.67e-12 68.6
MsaG012222 AT5G45050.4 47.692 65 33 1 425 488 1042 1106 2.13e-12 71.2
MsaG012222 AT5G45050.4 50.769 65 30 2 205 267 1037 1101 5.72e-12 69.7
MsaG012222 AT5G45050.1 47.692 65 33 1 425 488 1181 1245 2.33e-12 70.9
MsaG012222 AT5G45050.1 50.769 65 30 2 205 267 1176 1240 5.93e-12 69.7
MsaG012222 AT5G45050.2 47.692 65 33 1 425 488 1153 1217 2.73e-12 70.9
MsaG012222 AT5G45050.2 50.769 65 30 2 205 267 1148 1212 6.49e-12 69.7
MsaG012222 AT4G23810.1 45.902 61 29 2 207 263 156 216 2.79e-12 68.9
MsaG012222 AT5G24110.1 37.000 100 52 5 199 292 102 196 2.96e-12 68.6
MsaG012222 AT4G11070.2 43.056 72 35 3 207 272 107 178 3.63e-11 64.7
MsaG012222 AT4G11070.1 43.056 72 35 3 207 272 139 210 4.50e-11 65.1
MsaG012222 AT2G46400.1 27.429 175 103 5 377 545 65 221 5.07e-11 64.7

Find 190 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGACTTGGAGGAGGTTTC+GGG 0.221606 3:+21064844 None:intergenic
TTCAAGCCTACAACAGATTC+AGG 0.225658 3:-21065983 MsaT012222.1:CDS
CGGCGACTTGGAGGAGGTTT+CGG 0.234020 3:+21064843 None:intergenic
GCAGTGGCGGTGACCTAGGC+TGG 0.244486 3:-21064746 MsaT012222.1:CDS
TATAGATTATCTCCGTTATA+TGG 0.256932 3:+21064883 None:intergenic
CTTGGTTCGTTCAACCTTCC+CGG 0.258909 3:-21063836 MsaT012222.1:CDS
AACAATTTGCAAACTCAAAA+TGG 0.274108 3:-21064624 MsaT012222.1:CDS
CGCTACCCTTAACTTGCTTT+TGG 0.278034 3:+21064982 None:intergenic
ATATAGCTGGAGCTGGTAAT+TGG 0.284730 3:-21064704 MsaT012222.1:CDS
GGTTATCGGTGGCGGAAATA+TGG 0.285913 3:-21064264 MsaT012222.1:CDS
TCCTCGCAAGCAAAGCTTCC+TGG 0.313451 3:-21063731 MsaT012222.1:CDS
GGATATAATTGGAGAAAATA+TGG 0.316349 3:-21065005 MsaT012222.1:CDS
TATAACGGAGATAATCTATA+AGG 0.331910 3:-21064880 MsaT012222.1:CDS
CATCGGAGGATGGATATAAT+TGG 0.333091 3:-21065016 MsaT012222.1:CDS
GATGAAAATCTTGCACTAAA+TGG 0.339970 3:-21067092 MsaT012222.1:CDS
ATGTAGTGATCACAGATTTA+AGG 0.340679 3:+21064017 None:intergenic
GTTGGATTGGTTACCGTATC+CGG 0.341255 3:+21064644 None:intergenic
CCCTGTGGTTCACCATGTTC+AGG 0.344262 3:+21064771 None:intergenic
AATGGAAACTTTCCTGTTGT+TGG 0.346418 3:+21066106 None:intergenic
TCGAGAACTCGACTTGTTCT+CGG 0.350344 3:+21066905 None:intergenic
TCCACATTTGGTTCTCCCTT+TGG 0.354303 3:+21063638 None:intergenic
TCTTGCACTAAATGGTGATT+GGG 0.360621 3:-21067084 MsaT012222.1:CDS
AACTTATTCTCTCAGGAAAC+TGG 0.362818 3:-21064379 MsaT012222.1:intron
CACTCATGGTAGTGTATCAT+TGG 0.368402 3:-21064523 MsaT012222.1:CDS
GGTACTACTCACATTGATTC+AGG 0.374030 3:-21064603 MsaT012222.1:CDS
CATGAATCCCATTTCATTTG+CGG 0.377014 3:+21063664 None:intergenic
CGTGTTCCTTGCAAATTCAT+TGG 0.378555 3:-21066721 MsaT012222.1:intron
AACTTTCCTGTTGTTGGAGA+TGG 0.388150 3:+21066112 None:intergenic
ATGTTAAGGCCGCCGCGTTC+AGG 0.388731 3:+21063608 None:intergenic
GCAACGCGCCGCAAATGAAA+TGG 0.390178 3:-21063672 MsaT012222.1:CDS
GACTAGTTGGTTCCTGGTGT+TGG 0.390217 3:-21065047 MsaT012222.1:intron
GGCGGCCTTAACATGCAAAA+TGG 0.396093 3:-21063599 MsaT012222.1:CDS
GAACCTTGCAATGTCGGGAT+TGG 0.397116 3:-21063759 MsaT012222.1:CDS
TGTTGTTGCTGCATCATGAA+TGG 0.397926 3:+21063695 None:intergenic
AACCTTGCAATGTCGGGATT+GGG 0.398700 3:-21063758 MsaT012222.1:CDS
GCAGCTCAAGGACAAGCTTC+TGG 0.405122 3:-21063923 MsaT012222.1:CDS
TTGTGAACTTGAGATGGTTC+AGG 0.405320 3:+21063875 None:intergenic
ATCTTGCACTAAATGGTGAT+TGG 0.405599 3:-21067085 MsaT012222.1:CDS
GATAGAATTGCTGCTCGAAC+TGG 0.408486 3:-21066870 MsaT012222.1:CDS
TCAGGATTAGCGTCCACATT+TGG 0.408554 3:+21063626 None:intergenic
AAGTTTCCATTTGTTTCAAA+TGG 0.409529 3:-21066094 MsaT012222.1:CDS
TACTACAAGTGCACCAATGC+AGG 0.412359 3:-21064079 MsaT012222.1:CDS
ATGCCTGACCGGCGACTTGG+AGG 0.413497 3:+21064834 None:intergenic
CCAAGTCGCCGGTCAGGCAT+AGG 0.416054 3:-21064831 MsaT012222.1:CDS
TTGGATTGGTTACCGTATCC+GGG 0.416255 3:+21064645 None:intergenic
AACGGAGACTAGTTGGTTCC+TGG 0.420909 3:-21065053 MsaT012222.1:intron
ATAACGGAGATAATCTATAA+GGG 0.422795 3:-21064879 MsaT012222.1:CDS
ACGTCCGAATTCAGAACATT+CGG 0.423285 3:-21066994 MsaT012222.1:CDS
CCTCCTCCAAGTCGCCGGTC+AGG 0.425165 3:-21064837 MsaT012222.1:CDS
ATATGGCCAAAAGCAAGTTA+AGG 0.425865 3:-21064988 MsaT012222.1:CDS
GGAAGCTTTGCTTGCGAGGA+AGG 0.428637 3:+21063734 None:intergenic
AATGGGTTCATAGGCATTCC+AGG 0.429862 3:+21063713 None:intergenic
ATGACCTAGCTGCTGTCTCC+CGG 0.431091 3:+21063817 None:intergenic
CCTTACAGTGCACCCTGCAT+TGG 0.431542 3:+21064066 None:intergenic
GAGGGACAAGATGGTGATTC+CGG 0.435458 3:-21066957 MsaT012222.1:CDS
AAGAATGACTACCTTGGGTT+GGG 0.441222 3:+21064219 None:intergenic
CTTCCCGAATGTTCTGAATT+CGG 0.445390 3:+21066990 None:intergenic
TGACAGCTGATGTTGCTTCA+AGG 0.445597 3:+21064670 None:intergenic
ATGGTTCAGGTCTATGCATA+TGG 0.448997 3:+21063888 None:intergenic
GGTCATCCGCATGGCTTCTT+CGG 0.452741 3:-21063800 MsaT012222.1:CDS
TAAAGTGAGGTTTGAATGGC+TGG 0.453770 3:-21067119 None:intergenic
GAGGGCCCTGAATCTGTTGT+AGG 0.453857 3:+21065977 None:intergenic
CCTATGCCTGACCGGCGACT+TGG 0.458013 3:+21064831 None:intergenic
GTTGTTGCTGCATCATGAAT+GGG 0.462753 3:+21063696 None:intergenic
GGAGAATCTAAAAGTGTAGT+AGG 0.463976 3:+21066744 None:intergenic
GTGTACTCATTCAAATTGTC+CGG 0.469086 3:-21064937 MsaT012222.1:CDS
ATTATGAATCACATGCCTCT+TGG 0.469433 3:-21063554 MsaT012222.1:CDS
CTGTCGAACCTTGCAATGTC+GGG 0.470366 3:-21063764 MsaT012222.1:CDS
TATGGCCAAAAGCAAGTTAA+GGG 0.471248 3:-21064987 MsaT012222.1:CDS
ATGTTGCCATTTGAAACAAA+TGG 0.473438 3:+21066088 None:intergenic
TAGTTGGTTCCTGGTGTTGG+AGG 0.473926 3:-21065044 MsaT012222.1:CDS
ATATCCTCGATGATGGTTAT+CGG 0.475694 3:-21064278 MsaT012222.1:CDS
CCAATGCAGGGTGCACTGTA+AGG 0.487294 3:-21064066 MsaT012222.1:CDS
CAACGCGCCGCAAATGAAAT+GGG 0.487752 3:-21063671 MsaT012222.1:CDS
CGTCCGAATTCAGAACATTC+GGG 0.488948 3:-21066993 MsaT012222.1:CDS
GATAACTTGTATCGCTCAAG+TGG 0.489377 3:+21066931 None:intergenic
GGTGGCAGTGGCGGTGACCT+AGG 0.491981 3:-21064750 MsaT012222.1:CDS
GCACAGCCATCTCCAACAAC+AGG 0.493338 3:-21066118 MsaT012222.1:CDS
TTGGTTCGTTCAACCTTCCC+GGG 0.494017 3:-21063835 MsaT012222.1:CDS
GTACAGAAGGGAAATATAGC+TGG 0.494656 3:-21064717 MsaT012222.1:CDS
GAGTTTGCAAATTGTTGGAT+TGG 0.499841 3:+21064631 None:intergenic
TGACTGCTGGAACGAGCAGC+GGG 0.501885 3:+21063968 None:intergenic
TCCTGAACATGGTGAACCAC+AGG 0.504125 3:-21064772 MsaT012222.1:CDS
TGCATCATGAATGGGTTCAT+AGG 0.504266 3:+21063704 None:intergenic
AACGGCATGAGGCCTTCGCT+TGG 0.513928 3:-21063854 MsaT012222.1:CDS
AATTCAGAACATTCGGGAAG+TGG 0.514532 3:-21066987 MsaT012222.1:CDS
CAAGTCGCCGGTCAGGCATA+GGG 0.514587 3:-21064830 MsaT012222.1:CDS
GGTGAACCACAGGGTGGCAG+TGG 0.518041 3:-21064762 MsaT012222.1:CDS
CCTGTCGAACCTTGCAATGT+CGG 0.519344 3:-21063765 MsaT012222.1:CDS
ATCGAGGATATCTACTTCGC+TGG 0.520413 3:+21064290 None:intergenic
CAGTGGCGGTGACCTAGGCT+GGG 0.521688 3:-21064745 MsaT012222.1:CDS
ATTCGCATTGACGTGACTGC+TGG 0.522171 3:+21063955 None:intergenic
TCCAGGAAGCTTTGCTTGCG+AGG 0.522306 3:+21063730 None:intergenic
CCGACATTGCAAGGTTCGAC+AGG 0.522335 3:+21063765 None:intergenic
CCTGACCGGCGACTTGGAGG+AGG 0.523850 3:+21064837 None:intergenic
TTCTCATGAGGGCCATATAA+CGG 0.530629 3:-21064895 MsaT012222.1:CDS
GAACTCGACTTGTTCTCGGT+TGG 0.530653 3:+21066909 None:intergenic
TCAGCTGTCAACCCCGGATA+CGG 0.534204 3:-21064657 MsaT012222.1:CDS
TAAGAATGACTACCTTGGGT+TGG 0.541313 3:+21064218 None:intergenic
CTAGCTGCTGTCTCCCGGGA+AGG 0.542522 3:+21063822 None:intergenic
AGGCTGGGCTAATGTACAGA+AGG 0.548184 3:-21064730 MsaT012222.1:CDS
ATGCTCTCTGTATTCAACCT+TGG 0.549716 3:+21066837 None:intergenic
GAAGCTTTGCTTGCGAGGAA+GGG 0.549966 3:+21063735 None:intergenic
CCAGGCGGTATAGTCAAGTA+AGG 0.550484 3:+21066774 None:intergenic
TCCACTTGCATGTCAGCATG+AGG 0.551146 3:+21064798 None:intergenic
TGTATCGCTCAAGTGGGTAC+CGG 0.551680 3:+21066938 None:intergenic
TCTAGTAGCTCCACTCATCT+CGG 0.552091 3:+21064347 None:intergenic
GGCCCAATCCCGACATTGCA+AGG 0.552372 3:+21063756 None:intergenic
TCAAGCCTACAACAGATTCA+GGG 0.552504 3:-21065982 MsaT012222.1:CDS
ATGGGATTCATGTTACCAAA+GGG 0.552557 3:-21063653 MsaT012222.1:CDS
GAACCACAGGGTGGCAGTGG+CGG 0.552598 3:-21064759 MsaT012222.1:CDS
ACTCATGGTAGTGTATCATT+GGG 0.552943 3:-21064522 MsaT012222.1:CDS
TAGTTGACCCTATGCCTGAC+CGG 0.554027 3:+21064823 None:intergenic
GAAGAAGAGGAAGACGATCA+AGG 0.561217 3:-21064546 MsaT012222.1:CDS
TGACCTAGCTGCTGTCTCCC+GGG 0.564057 3:+21063818 None:intergenic
AGGGACCTTGGACTTGGACT+AGG 0.564318 3:+21067056 None:intergenic
CCCTCATGCTGACATGCAAG+TGG 0.564823 3:-21064799 MsaT012222.1:CDS
GTACACTTGTAGTAACTTCG+AGG 0.567336 3:+21064954 None:intergenic
TCTGTACATTAGCCCAGCCT+AGG 0.570398 3:+21064733 None:intergenic
GTAGTCTGAACAACAACTCT+AGG 0.571480 3:+21064312 None:intergenic
GAAGTAGATATCCTCGATGA+TGG 0.573669 3:-21064285 MsaT012222.1:CDS
AAGGGAAATATAGCTGGAGC+TGG 0.574752 3:-21064711 MsaT012222.1:CDS
CAATGAATTTGCAAGGAACA+CGG 0.575971 3:+21066722 None:intergenic
CGAAACCTCCTCCAAGTCGC+CGG 0.578429 3:-21064842 MsaT012222.1:CDS
GGTAGAACTGAGGGACAAGA+TGG 0.580548 3:-21066966 MsaT012222.1:CDS
CAATTATATCCATCCTCCGA+TGG 0.586613 3:+21065017 None:intergenic
TCGATGATGGTTATCGGTGG+CGG 0.587391 3:-21064272 MsaT012222.1:CDS
ATGAATCAGAGTCTAAAAGA+AGG 0.588175 3:-21064482 MsaT012222.1:intron
GAATCATATGCCGAGATGAG+TGG 0.589323 3:-21064357 MsaT012222.1:CDS
GAAAGTAGAACGTTCTCATG+AGG 0.589600 3:-21064907 MsaT012222.1:CDS
AACTCACCAATGAATTTGCA+AGG 0.592002 3:+21066715 None:intergenic
ATGCCGTTGTGAACTTGAGA+TGG 0.595174 3:+21063869 None:intergenic
CTCAAGTTCACAACGGCATG+AGG 0.596029 3:-21063865 MsaT012222.1:CDS
GAGAACAAGTCGAGTTCTCG+AGG 0.596736 3:-21066903 MsaT012222.1:CDS
CATTGATTCAGGAGATGCAG+TGG 0.597968 3:-21064592 MsaT012222.1:CDS
AACAACTCTAGGCTCGCGAA+TGG 0.599268 3:+21064323 None:intergenic
GACTTGGAGGAGGTTTCGGG+TGG 0.599626 3:+21064847 None:intergenic
GAACTGGATTTAATGCTCCA+AGG 0.600329 3:-21066854 MsaT012222.1:CDS
AATGAATTTGCAAGGAACAC+GGG 0.604026 3:+21066723 None:intergenic
AAAGTAGAACGTTCTCATGA+GGG 0.604575 3:-21064906 MsaT012222.1:CDS
TCGGGAAGTGGTAGAACTGA+GGG 0.606371 3:-21066975 MsaT012222.1:CDS
GAAGACGATCAAGGCACTCA+TGG 0.606644 3:-21064537 MsaT012222.1:CDS
CCACTTGCATGTCAGCATGA+GGG 0.606802 3:+21064799 None:intergenic
GCAACATCAGCTGTCAACCC+CGG 0.607436 3:-21064663 MsaT012222.1:CDS
TGGTGTTGGAGGTACTCCAT+CGG 0.609375 3:-21065033 MsaT012222.1:CDS
TACACTTGTAGTAACTTCGA+GGG 0.609634 3:+21064955 None:intergenic
GTCTACCTAGTCCAAGTCCA+AGG 0.614182 3:-21067061 MsaT012222.1:CDS
TAACGGAGATAATCTATAAG+GGG 0.614320 3:-21064878 MsaT012222.1:CDS
CCTTACTTGACTATACCGCC+TGG 0.615366 3:-21066774 MsaT012222.1:CDS
GGAGGTACTCCATCGGAGGA+TGG 0.616558 3:-21065026 MsaT012222.1:CDS
TATGGACAGAAAGTTGTCAA+AGG 0.617805 3:-21064246 MsaT012222.1:CDS
AATGCTTCTAACGCAGCTCA+AGG 0.620924 3:-21063935 MsaT012222.1:CDS
GTGACTGCTGGAACGAGCAG+CGG 0.626891 3:+21063967 None:intergenic
CTTGCACTAAATGGTGATTG+GGG 0.627891 3:-21067083 MsaT012222.1:CDS
AAAGTGAGGTTTGAATGGCT+GGG 0.630620 3:-21067118 None:intergenic
ACTACAAGTGCACCAATGCA+GGG 0.634462 3:-21064078 MsaT012222.1:CDS
AATGGGATTCATGTTACCAA+AGG 0.635351 3:-21063654 MsaT012222.1:CDS
CTTCCCGGGAGACAGCAGCT+AGG 0.636920 3:-21063821 MsaT012222.1:CDS
GATGGAGTACCTCCAACACC+AGG 0.637371 3:+21065035 None:intergenic
TCTGTGATCACTACATACGA+GGG 0.638313 3:-21064010 MsaT012222.1:CDS
ATCTGTGATCACTACATACG+AGG 0.641100 3:-21064011 MsaT012222.1:CDS
TGTATCATTGGGTTATGATG+CGG 0.643412 3:-21064511 MsaT012222.1:CDS
TCAAAGGAAATCCCAACCCA+AGG 0.645747 3:-21064230 MsaT012222.1:intron
TGTTGTAGGCTTGAAAGCGA+AGG 0.648946 3:+21065991 None:intergenic
TGGATTGGTTACCGTATCCG+GGG 0.651936 3:+21064646 None:intergenic
TCCTCGATGATGGTTATCGG+TGG 0.657777 3:-21064275 MsaT012222.1:CDS
CCTGAACATGGTGAACCACA+GGG 0.659823 3:-21064771 MsaT012222.1:CDS
GTGCACTGTAAGGAAGCATG+TGG 0.665453 3:-21064056 MsaT012222.1:CDS
CAAGTGGACAATCCTGAACA+TGG 0.665803 3:-21064783 MsaT012222.1:CDS
ACCAAAGGGAGAACCAAATG+TGG 0.665868 3:-21063639 MsaT012222.1:CDS
AACGGAGATAATCTATAAGG+GGG 0.668962 3:-21064877 MsaT012222.1:CDS
AGGTTGAACGAACCAAGCGA+AGG 0.670429 3:+21063842 None:intergenic
TGTTGGAGGTACTCCATCGG+AGG 0.674027 3:-21065030 MsaT012222.1:CDS
TTCGGGAAGTGGTAGAACTG+AGG 0.674120 3:-21066976 MsaT012222.1:CDS
TCACCGCCACTGCCACCCTG+TGG 0.678158 3:+21064756 None:intergenic
GGCTGGGCTAATGTACAGAA+GGG 0.678675 3:-21064729 MsaT012222.1:CDS
ATAACTTGTATCGCTCAAGT+GGG 0.689016 3:+21066932 None:intergenic
TCATTGGGTTATGATGCGGA+AGG 0.689115 3:-21064507 MsaT012222.1:CDS
CAGCAGCTAGGTCATCCGCA+TGG 0.689731 3:-21063809 MsaT012222.1:CDS
CTGATGATAATTCTGAGCTG+CGG 0.709325 3:+21066065 None:intergenic
AACAAGTCGAGTTCTCGAGG+TGG 0.724082 3:-21066900 MsaT012222.1:CDS
TTCATGCCGAAGAAGCCATG+CGG 0.727689 3:+21063794 None:intergenic
AGTGTAGTAGGACTAAGACC+AGG 0.734205 3:+21066756 None:intergenic
GACTGCTGGAACGAGCAGCG+GGG 0.738619 3:+21063969 None:intergenic
GAACCATCTCAAGTTCACAA+CGG 0.751840 3:-21063872 MsaT012222.1:CDS
GACGCTAATCCTGAACGCGG+CGG 0.752010 3:-21063617 MsaT012222.1:CDS
GCCACCGATAACCATCATCG+AGG 0.756754 3:+21064274 None:intergenic
GTGGACGCTAATCCTGAACG+CGG 0.765043 3:-21063620 MsaT012222.1:CDS
GAACATGGTGAACCACAGGG+TGG 0.772249 3:-21064768 MsaT012222.1:CDS
GTAGTAGGACTAAGACCAGG+CGG 0.775032 3:+21066759 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 21063541 21067126 21063541 ID=MsaG012222
Chr3 mRNA 21063541 21067126 21063541 ID=MsaT012222.1;Parent=MsaG012222
Chr3 exon 21063541 21064105 21063541 ID=MsaT012222.1.exon5;Parent=MsaT012222.1
Chr3 CDS 21063541 21064105 21063541 ID=cds.MsaT012222.1;Parent=MsaT012222.1
Chr3 exon 21064231 21064386 21064231 ID=MsaT012222.1.exon4;Parent=MsaT012222.1
Chr3 CDS 21064231 21064386 21064231 ID=cds.MsaT012222.1;Parent=MsaT012222.1
Chr3 exon 21064483 21065063 21064483 ID=MsaT012222.1.exon3;Parent=MsaT012222.1
Chr3 CDS 21064483 21065063 21064483 ID=cds.MsaT012222.1;Parent=MsaT012222.1
Chr3 exon 21065952 21066140 21065952 ID=MsaT012222.1.exon2;Parent=MsaT012222.1
Chr3 CDS 21065952 21066140 21065952 ID=cds.MsaT012222.1;Parent=MsaT012222.1
Chr3 exon 21066722 21067126 21066722 ID=MsaT012222.1.exon1;Parent=MsaT012222.1
Chr3 CDS 21066722 21067126 21066722 ID=cds.MsaT012222.1;Parent=MsaT012222.1
Gene Sequence

>MsaT012222.1

ATGGCTGGGATTGATGAAAATCTTGCACTAAATGGTGATTGGGGTCTACCTAGTCCAAGTCCAAGGTCCCTTTTTTCTAGACTGCTAGAAGAAGATAATAATAATGTAATACGTCCGAATTCAGAACATTCGGGAAGTGGTAGAACTGAGGGACAAGATGGTGATTCCGGTACCCACTTGAGCGATACAAGTTATCCAACCGAGAACAAGTCGAGTTCTCGAGGTGGTCTTGTTGATAGAATTGCTGCTCGAACTGGATTTAATGCTCCAAGGTTGAATACAGAGAGCATTAGATCTACTGAACTCTCACTCAATTCTGAGATTCAGTCACCTTACTTGACTATACCGCCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCCGTGTTCCTTGCAAATTCATTGGCACAGCCATCTCCAACAACAGGAAAGTTTCCATTTGTTTCAAATGGCAACATCCGCAGCTCAGAATTATCATCAGATGTTCAAGAAAAATCTAAACATAATGGCTTTAATGATATTTATGCATCGTCCTTCGCTTTCAAGCCTACAACAGATTCAGGGCCCTCTTTTTATCAAGGTGCTGGTAGAAATTTGGTTCCTGGTGTTGGAGGTACTCCATCGGAGGATGGATATAATTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGCGAGTACCCTCGAAGTTACTACAAGTGTACTCATTCAAATTGTCCGGTTAAAAAGAAAGTAGAACGTTCTCATGAGGGCCATATAACGGAGATAATCTATAAGGGGGCACACAACCACCCGAAACCTCCTCCAAGTCGCCGGTCAGGCATAGGGTCAACTAACCCTCATGCTGACATGCAAGTGGACAATCCTGAACATGGTGAACCACAGGGTGGCAGTGGCGGTGACCTAGGCTGGGCTAATGTACAGAAGGGAAATATAGCTGGAGCTGGTAATTGGAAGCATGACAACCTTGAAGCAACATCAGCTGTCAACCCCGGATACGGTAACCAATCCAACAATTTGCAAACTCAAAATGGTACTACTCACATTGATTCAGGAGATGCAGTGGATCGCTCGTCTACATTTTCAAATGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGTATCATTGGGTTATGATGCGGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCCGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTTCAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGACAGAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCACGATGTCCCCGCTGCTCGTTCCAGCAGTCACGTCAATGCGAATGCTTCTAACGCAGCTCAAGGACAAGCTTCTGGTCTTCTTCAAAACCATATGCATAGACCTGAACCATCTCAAGTTCACAACGGCATGAGGCCTTCGCTTGGTTCGTTCAACCTTCCCGGGAGACAGCAGCTAGGTCATCCGCATGGCTTCTTCGGCATGAATCAACACCTGTCGAACCTTGCAATGTCGGGATTGGGCCCTTCCTCGCAAGCAAAGCTTCCTGGAATGCCTATGAACCCATTCATGATGCAGCAACAACAGCAACGCGCCGCAAATGAAATGGGATTCATGTTACCAAAGGGAGAACCAAATGTGGACGCTAATCCTGAACGCGGCGGCCTTAACATGCAAAATGGCTCATCATCAATGTATCAAGATATTATGAATCACATGCCTCTTGGACCTCACATGTAA

Protein sequence

>MsaT012222.1

MAGIDENLALNGDWGLPSPSPRSLFSRLLEEDNNNVIRPNSEHSGSGRTEGQDGDSGTHLSDTSYPTENKSSSRGGLVDRIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRSSELSSDVQEKSKHNGFNDIYASSFAFKPTTDSGPSFYQGAGRNLVPGVGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRSGIGSTNPHADMQVDNPEHGEPQGGSGGDLGWANVQKGNIAGAGNWKHDNLEATSAVNPGYGNQSNNLQTQNGTTHIDSGDAVDRSSTFSNEEEEDDQGTHGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQASGLLQNHMHRPEPSQVHNGMRPSLGSFNLPGRQQLGHPHGFFGMNQHLSNLAMSGLGPSSQAKLPGMPMNPFMMQQQQQRAANEMGFMLPKGEPNVDANPERGGLNMQNGSSSMYQDIMNHMPLGPHM*