AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG012380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012380 MtrunA17_Chr3g0079691 98.153 704 11 1 1 702 1 704 0.0 1427
MsaG012380 MtrunA17_Chr3g0101131 43.943 487 197 14 109 573 60 492 6.75e-103 327
MsaG012380 MtrunA17_Chr7g0249311 52.078 361 157 7 211 564 110 461 2.05e-101 325
MsaG012380 MtrunA17_Chr7g0249311 51.389 72 34 1 280 350 392 463 5.64e-14 75.5
MsaG012380 MtrunA17_Chr5g0445311 40.638 470 182 12 109 561 41 430 6.64e-89 288
MsaG012380 MtrunA17_Chr5g0445311 48.148 81 39 2 495 575 200 277 9.46e-14 74.7
MsaG012380 MtrunA17_Chr5g0432161 42.038 471 180 13 112 559 85 485 1.29e-88 289
MsaG012380 MtrunA17_Chr7g0218081 51.495 301 104 9 278 574 226 488 4.17e-85 278
MsaG012380 MtrunA17_Chr7g0249301 48.225 338 106 9 260 557 46 354 6.99e-84 270
MsaG012380 MtrunA17_Chr7g0249301 46.078 102 43 5 494 586 61 159 6.98e-15 77.0
MsaG012380 MtrunA17_Chr5g0418191 48.718 312 106 7 262 571 136 395 3.30e-82 267
MsaG012380 MtrunA17_Chr5g0418191 47.525 101 42 5 495 587 151 248 1.08e-16 83.2
MsaG012380 MtrunA17_Chr7g0243891 40.351 456 203 10 112 565 56 444 7.27e-82 270
MsaG012380 MtrunA17_Chr7g0243891 48.276 87 38 3 495 577 216 299 6.46e-16 81.3
MsaG012380 MtrunA17_Chr7g0263531 38.987 395 173 10 176 554 78 420 1.43e-69 234
MsaG012380 MtrunA17_Chr4g0004911 67.717 127 34 3 436 557 274 398 3.16e-47 174
MsaG012380 MtrunA17_Chr4g0004911 34.263 251 116 7 102 343 38 248 6.50e-26 112
MsaG012380 MtrunA17_Chr4g0004911 47.778 90 38 2 467 556 165 245 6.19e-17 84.3
MsaG012380 MtrunA17_Chr4g0004911 55.000 60 26 1 280 338 336 395 4.71e-13 72.0
MsaG012380 MtrunA17_Chr3g0106491 60.870 138 51 1 425 559 292 429 1.54e-45 170
MsaG012380 MtrunA17_Chr3g0106491 39.574 235 108 6 110 343 60 261 4.43e-36 142
MsaG012380 MtrunA17_Chr3g0106491 54.545 77 26 3 486 556 185 258 4.04e-15 78.6
MsaG012380 MtrunA17_Chr3g0106491 55.556 72 30 2 280 350 365 435 2.57e-14 76.3
MsaG012380 MtrunA17_Chr4g0042831 56.429 140 51 2 433 571 224 354 1.37e-41 155
MsaG012380 MtrunA17_Chr4g0042831 60.976 82 29 2 262 342 129 208 6.89e-24 104
MsaG012380 MtrunA17_Chr4g0042831 60.000 60 23 1 280 338 278 337 2.70e-14 75.5
MsaG012380 MtrunA17_Chr4g0042831 53.425 73 32 1 495 567 145 215 4.12e-14 74.7
MsaG012380 MtrunA17_Chr1g0188941 63.095 84 31 0 471 554 27 110 2.42e-34 126
MsaG012380 MtrunA17_Chr1g0188941 51.613 62 29 1 280 340 51 112 3.18e-15 72.4
MsaG012380 MtrunA17_Chr8g0335811 65.789 76 26 0 476 551 135 210 3.95e-30 119
MsaG012380 MtrunA17_Chr8g0335811 61.404 57 21 1 280 335 154 210 1.11e-16 79.7
MsaG012380 MtrunA17_Chr5g0447701 57.000 100 42 1 459 557 215 314 2.29e-29 120
MsaG012380 MtrunA17_Chr5g0447701 61.667 60 23 0 279 338 91 150 5.96e-20 92.8
MsaG012380 MtrunA17_Chr5g0447701 43.636 110 47 5 246 349 220 320 2.41e-14 75.5
MsaG012380 MtrunA17_Chr5g0447701 50.000 64 31 1 493 556 90 152 1.60e-11 66.6
MsaG012380 MtrunA17_Chr7g0270191 60.465 86 34 0 479 564 129 214 3.19e-28 115
MsaG012380 MtrunA17_Chr7g0270191 57.353 68 28 1 280 346 145 212 1.88e-17 83.6
MsaG012380 MtrunA17_Chr2g0294231 65.385 78 27 0 479 556 187 264 1.26e-27 115
MsaG012380 MtrunA17_Chr2g0294231 57.812 64 26 1 280 342 203 266 4.63e-17 84.0
MsaG012380 MtrunA17_Chr3g0129361 62.162 74 28 0 478 551 127 200 1.26e-27 111
MsaG012380 MtrunA17_Chr3g0129361 56.140 57 24 1 280 335 144 200 1.39e-14 73.6
MsaG012380 MtrunA17_Chr4g0051881 64.474 76 27 0 481 556 164 239 1.62e-27 114
MsaG012380 MtrunA17_Chr4g0051881 64.062 64 22 1 280 342 178 241 8.64e-19 88.6
MsaG012380 MtrunA17_Chr5g0418781 64.474 76 27 0 476 551 105 180 3.50e-27 111
MsaG012380 MtrunA17_Chr5g0418781 64.912 57 19 1 280 335 124 180 4.80e-17 82.0
MsaG012380 MtrunA17_Chr1g0194481 59.036 83 34 0 479 561 142 224 1.63e-26 110
MsaG012380 MtrunA17_Chr1g0194481 54.054 74 33 1 280 352 158 231 1.29e-18 87.8
MsaG012380 MtrunA17_Chr4g0074001 50.485 103 50 1 456 557 319 421 2.88e-26 113
MsaG012380 MtrunA17_Chr4g0074001 50.667 75 32 2 272 345 355 425 3.75e-16 82.0
MsaG012380 MtrunA17_Chr4g0074001 52.632 76 33 2 272 346 178 251 9.36e-16 80.9
MsaG012380 MtrunA17_Chr8g0383351 61.333 75 28 1 478 551 142 216 3.76e-26 107
MsaG012380 MtrunA17_Chr8g0383351 56.140 57 24 1 280 335 160 216 8.88e-15 74.3
MsaG012380 MtrunA17_Chr5g0443131 60.526 76 30 0 481 556 143 218 7.38e-26 108
MsaG012380 MtrunA17_Chr5g0443131 59.375 64 25 1 280 342 157 220 6.60e-17 82.4
MsaG012380 MtrunA17_Chr8g0383251 50.000 88 44 0 482 569 95 182 2.25e-25 103
MsaG012380 MtrunA17_Chr8g0383251 46.667 75 39 1 280 353 108 182 2.48e-12 66.2
MsaG012380 MtrunA17_Chr1g0150801 56.627 83 34 1 471 551 76 158 2.57e-25 102
MsaG012380 MtrunA17_Chr1g0150801 51.724 58 27 1 280 336 102 159 9.13e-14 69.7
MsaG012380 MtrunA17_Chr7g0224801 64.706 68 24 0 486 553 84 151 6.91e-25 102
MsaG012380 MtrunA17_Chr7g0224801 53.448 58 26 1 280 336 93 150 1.39e-15 75.1
MsaG012380 MtrunA17_Chr4g0075201 48.039 102 52 1 456 556 228 329 3.63e-24 106
MsaG012380 MtrunA17_Chr4g0075201 41.935 93 52 2 249 339 236 328 1.23e-14 77.0
MsaG012380 MtrunA17_Chr2g0288871 39.073 151 85 2 411 554 215 365 1.51e-23 105
MsaG012380 MtrunA17_Chr2g0288871 44.086 93 50 2 249 339 274 366 1.56e-16 83.6
MsaG012380 MtrunA17_Chr7g0248721 48.598 107 48 2 445 551 97 196 1.62e-23 99.4
MsaG012380 MtrunA17_Chr7g0248721 44.898 98 39 4 252 336 102 197 5.40e-16 77.8
MsaG012380 MtrunA17_Chr8g0386241 49.495 99 48 1 461 559 71 167 1.79e-23 98.2
MsaG012380 MtrunA17_Chr8g0386241 36.207 116 62 4 225 336 53 160 1.34e-14 72.8
MsaG012380 MtrunA17_Chr3g0129321 48.387 93 48 0 481 573 104 196 2.57e-23 98.6
MsaG012380 MtrunA17_Chr3g0129321 55.000 60 26 1 280 338 118 177 2.77e-14 72.4
MsaG012380 MtrunA17_Chr7g0270831 50.000 92 44 2 478 567 199 290 2.71e-23 103
MsaG012380 MtrunA17_Chr7g0270831 54.098 61 26 2 281 339 217 277 5.77e-14 74.7
MsaG012380 MtrunA17_Chr1g0189391 42.143 140 71 5 439 570 36 173 4.60e-23 100
MsaG012380 MtrunA17_Chr2g0322391 53.571 84 38 1 474 556 328 411 1.00e-22 103
MsaG012380 MtrunA17_Chr2g0322391 42.683 82 44 3 281 360 350 430 3.04e-12 69.7
MsaG012380 MtrunA17_Chr4g0068541 52.381 84 40 0 479 562 192 275 1.31e-22 101
MsaG012380 MtrunA17_Chr4g0068541 52.174 69 32 1 280 347 208 276 1.29e-15 79.7
MsaG012380 MtrunA17_Chr3g0099641 52.564 78 36 1 478 554 234 311 2.62e-22 100
MsaG012380 MtrunA17_Chr3g0099641 42.683 82 44 3 281 360 252 332 1.03e-13 73.9
MsaG012380 MtrunA17_Chr4g0051181 55.128 78 34 1 479 555 227 304 3.37e-22 100
MsaG012380 MtrunA17_Chr4g0051181 51.667 60 27 2 281 338 244 303 4.20e-12 68.9
MsaG012380 MtrunA17_Chr2g0302391 30.894 246 136 9 362 581 62 299 1.97e-21 97.8
MsaG012380 MtrunA17_Chr2g0302391 39.362 94 54 3 251 342 183 275 6.36e-13 71.2
MsaG012380 MtrunA17_Chr4g0060271 51.948 77 36 1 479 554 239 315 2.55e-21 98.6
MsaG012380 MtrunA17_Chr4g0060271 40.000 100 55 4 244 338 216 315 1.64e-12 70.9
MsaG012380 MtrunA17_Chr4g0025061 48.315 89 45 1 469 556 334 422 4.29e-21 98.2
MsaG012380 MtrunA17_Chr4g0025061 43.750 64 34 2 281 342 361 424 6.87e-11 65.5
MsaG012380 MtrunA17_Chr6g0485431 38.732 142 75 3 425 554 73 214 4.71e-21 95.5
MsaG012380 MtrunA17_Chr6g0485431 46.154 65 33 2 281 343 155 219 1.89e-11 66.2
MsaG012380 MtrunA17_Chr5g0432071 60.938 64 25 0 280 343 104 167 5.17e-21 92.0
MsaG012380 MtrunA17_Chr5g0432071 53.226 62 28 1 495 556 104 164 6.00e-14 71.6
MsaG012380 MtrunA17_Chr4g0053281 48.864 88 41 2 476 562 250 334 1.75e-20 93.6
MsaG012380 MtrunA17_Chr4g0053281 50.877 57 26 2 281 335 267 323 9.76e-12 67.0
MsaG012380 MtrunA17_Chr1g0147881 52.439 82 38 1 476 556 243 324 5.37e-20 92.0
MsaG012380 MtrunA17_Chr1g0147881 39.326 89 51 3 249 335 232 319 2.36e-12 68.9
MsaG012380 MtrunA17_Chr7g0216891 45.263 95 47 2 466 559 194 284 5.84e-20 94.4
MsaG012380 MtrunA17_Chr7g0216891 47.826 69 33 3 271 336 209 277 2.08e-11 67.0
MsaG012380 MtrunA17_Chr5g0447711 45.161 93 48 1 472 561 204 296 7.71e-20 90.9
MsaG012380 MtrunA17_Chr5g0447711 50.847 59 29 0 280 338 83 141 4.45e-14 73.9
MsaG012380 MtrunA17_Chr4g0025051 52.632 76 35 1 482 556 322 397 2.13e-19 92.8
MsaG012380 MtrunA17_Chr7g0238921 63.158 57 21 0 495 551 124 180 3.65e-19 89.4
MsaG012380 MtrunA17_Chr7g0238921 51.429 70 33 1 271 339 115 184 5.98e-14 73.6
MsaG012380 MtrunA17_Chr5g0401821 47.368 95 39 2 460 553 174 258 6.00e-19 87.4
MsaG012380 MtrunA17_Chr5g0401821 36.782 87 52 3 251 335 171 256 3.83e-11 64.3
MsaG012380 MtrunA17_Chr2g0333851 42.553 94 38 2 478 555 137 230 2.49e-18 86.7
MsaG012380 MtrunA17_Chr2g0333851 49.180 61 29 2 280 338 169 229 5.12e-12 67.8
MsaG012380 MtrunA17_Chr4g0071521 48.387 93 37 3 460 551 220 302 3.18e-18 86.3
MsaG012380 MtrunA17_Chr4g0071521 36.782 87 52 3 251 335 217 302 2.13e-12 68.9
MsaG012380 MtrunA17_Chr3g0136961 52.055 73 32 2 482 551 123 195 3.52e-18 85.9
MsaG012380 MtrunA17_Chr3g0136961 50.000 62 29 2 276 335 134 195 2.62e-12 68.2
MsaG012380 MtrunA17_Chr2g0284321 53.030 66 29 2 277 340 32 97 9.00e-17 79.7
MsaG012380 MtrunA17_Chr2g0284321 46.667 75 38 2 496 568 36 110 5.60e-14 71.6
MsaG012380 MtrunA17_Chr1g0150271 46.575 73 38 1 483 554 89 161 1.10e-16 80.5
MsaG012380 MtrunA17_Chr1g0150271 41.333 75 35 3 266 338 94 161 7.89e-11 63.2
MsaG012380 MtrunA17_Chr4g0001361 53.968 63 28 1 493 554 160 222 1.60e-16 81.3
MsaG012380 MtrunA17_Chr4g0001361 50.000 66 31 2 276 339 158 223 3.54e-14 74.3
MsaG012380 MtrunA17_Chr1g0184691 49.351 77 38 1 476 551 274 350 1.72e-16 81.6
MsaG012380 MtrunA17_Chr1g0184691 52.459 61 27 2 281 339 294 354 4.02e-12 68.6
MsaG012380 MtrunA17_Chr4g0024391 32.667 150 89 4 412 556 149 291 3.16e-16 82.0
MsaG012380 MtrunA17_Chr7g0270051 53.030 66 30 1 496 560 54 119 5.39e-16 78.6
MsaG012380 MtrunA17_Chr7g0270051 53.846 65 27 3 276 338 50 113 1.18e-13 71.6
MsaG012380 MtrunA17_Chr8g0379461 42.466 73 41 1 496 567 77 149 1.36e-15 77.0
MsaG012380 MtrunA17_Chr8g0379461 37.391 115 57 4 269 375 65 172 2.79e-15 76.3
MsaG012380 MtrunA17_Chr1g0150281 44.578 83 40 3 475 551 115 197 1.42e-15 77.8
MsaG012380 MtrunA17_Chr1g0150281 38.318 107 60 4 281 383 141 245 5.80e-12 67.0
MsaG012380 MtrunA17_Chr6g0468181 52.113 71 34 0 296 366 18 88 1.63e-15 73.2
MsaG012380 MtrunA17_Chr2g0289181 48.611 72 35 2 280 349 14 85 2.43e-15 76.3
MsaG012380 MtrunA17_Chr2g0289181 45.946 74 39 1 484 556 3 76 1.33e-14 73.9
MsaG012380 MtrunA17_Chr7g0228941 46.479 71 37 1 482 551 39 109 2.64e-15 73.2
MsaG012380 MtrunA17_Chr7g0228941 47.368 57 28 2 281 335 53 109 1.49e-12 65.1
MsaG012380 MtrunA17_Chr8g0387501 48.780 82 36 5 271 349 121 199 3.26e-15 76.6
MsaG012380 MtrunA17_Chr8g0387501 49.254 67 33 1 494 559 128 194 8.13e-15 75.5
MsaG012380 MtrunA17_Chr3g0139021 40.196 102 55 2 452 552 276 372 3.90e-15 78.2
MsaG012380 MtrunA17_Chr3g0139021 45.902 61 31 2 281 339 315 375 7.18e-11 64.7
MsaG012380 MtrunA17_Chr8g0387981 51.351 74 28 3 264 333 120 189 7.17e-15 77.0
MsaG012380 MtrunA17_Chr1g0202461 42.353 85 47 2 476 559 243 326 8.95e-15 77.0
MsaG012380 MtrunA17_Chr1g0202461 50.685 73 33 3 279 349 260 331 3.10e-13 72.0
MsaG012380 MtrunA17_Chr2g0319961 48.438 64 32 1 496 558 81 144 2.31e-14 73.9
MsaG012380 MtrunA17_Chr2g0319961 49.231 65 31 2 278 340 78 142 6.70e-12 66.6
MsaG012380 MtrunA17_Chr5g0419241 45.588 68 37 0 456 523 38 105 3.36e-14 69.3
MsaG012380 MtrunA17_Chr1g0188961 65.957 47 16 0 515 561 3 49 3.82e-14 67.8
MsaG012380 MtrunA17_Chr8g0348311 50.769 65 31 1 496 559 156 220 4.46e-14 74.3
MsaG012380 MtrunA17_Chr8g0348311 49.315 73 34 3 279 349 154 225 3.10e-11 65.5
MsaG012380 MtrunA17_Chr2g0293481 46.575 73 37 2 488 559 261 332 5.37e-14 75.1
MsaG012380 MtrunA17_Chr2g0293481 42.857 91 46 4 281 366 268 357 2.73e-12 69.7
MsaG012380 MtrunA17_Chr7g0248691 49.231 65 32 1 496 559 155 219 8.41e-14 73.2
MsaG012380 MtrunA17_Chr7g0248691 50.000 62 29 2 279 338 153 214 2.08e-11 65.9
MsaG012380 MtrunA17_Chr3g0126391 53.333 60 24 2 278 333 131 190 3.12e-13 71.6
MsaG012380 MtrunA17_Chr3g0126391 34.513 113 62 3 494 598 132 240 4.60e-12 68.2
MsaG012380 MtrunA17_Chr4g0009881 50.847 59 28 1 280 338 17 74 3.65e-13 66.6
MsaG012380 MtrunA17_Chr8g0347251 51.724 58 24 2 280 333 136 193 2.79e-12 68.9
MsaG012380 MtrunA17_Chr1g0188971 41.096 73 41 1 445 515 10 82 2.82e-12 62.8
MsaG012380 MtrunA17_Chr7g0275531 44.286 70 33 3 280 343 118 187 8.24e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012380 AT5G56270.1 50.339 737 274 28 1 697 1 685 0.0 537
MsaG012380 AT4G26440.1 42.918 706 252 22 1 696 1 565 4.92e-146 438
MsaG012380 AT4G26640.7 43.736 455 187 11 113 560 14 406 5.27e-96 306
MsaG012380 AT4G26640.2 43.736 455 187 11 113 560 54 446 1.44e-95 306
MsaG012380 AT4G26640.1 42.725 433 179 11 135 560 4 374 5.47e-84 274
MsaG012380 AT4G26640.5 52.414 290 88 6 275 560 27 270 1.52e-83 269
MsaG012380 AT4G26640.6 52.414 290 88 6 275 560 27 270 1.52e-83 269
MsaG012380 AT4G26640.4 52.414 290 88 6 275 560 27 270 1.52e-83 269
MsaG012380 AT4G26640.3 52.414 290 88 6 275 560 27 270 1.52e-83 269
MsaG012380 AT2G03340.1 49.301 286 91 8 278 561 248 481 2.73e-75 251
MsaG012380 AT2G03340.1 51.316 76 36 1 495 570 250 324 1.83e-16 83.6
MsaG012380 AT1G13960.2 47.857 280 105 6 278 554 74 315 4.14e-72 238
MsaG012380 AT1G13960.1 47.857 280 105 6 278 554 227 468 6.30e-72 243
MsaG012380 AT2G37260.3 47.038 287 103 10 274 551 79 325 5.01e-59 203
MsaG012380 AT2G37260.3 52.055 73 30 2 496 564 86 157 2.39e-14 75.5
MsaG012380 AT2G37260.2 47.038 287 103 10 274 551 77 323 5.89e-59 203
MsaG012380 AT2G37260.2 52.055 73 30 2 496 564 84 155 2.48e-14 75.5
MsaG012380 AT2G37260.1 47.931 290 96 12 274 551 159 405 1.33e-58 204
MsaG012380 AT2G37260.1 52.055 73 30 2 496 564 166 237 3.19e-14 75.9
MsaG012380 AT5G07100.2 68.519 108 25 1 450 557 105 203 1.62e-42 153
MsaG012380 AT5G07100.2 64.000 75 26 1 279 352 23 97 1.56e-24 102
MsaG012380 AT5G07100.2 45.882 85 44 1 495 577 24 108 3.44e-15 75.9
MsaG012380 AT5G07100.2 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
MsaG012380 AT5G07100.4 68.519 108 25 1 450 557 105 203 1.62e-42 153
MsaG012380 AT5G07100.4 64.000 75 26 1 279 352 23 97 1.56e-24 102
MsaG012380 AT5G07100.4 45.882 85 44 1 495 577 24 108 3.44e-15 75.9
MsaG012380 AT5G07100.4 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
MsaG012380 AT5G07100.5 68.519 108 25 1 450 557 105 203 1.62e-42 153
MsaG012380 AT5G07100.5 64.000 75 26 1 279 352 23 97 1.56e-24 102
MsaG012380 AT5G07100.5 45.882 85 44 1 495 577 24 108 3.44e-15 75.9
MsaG012380 AT5G07100.5 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
MsaG012380 AT5G07100.3 68.519 108 25 1 450 557 105 203 1.62e-42 153
MsaG012380 AT5G07100.3 64.000 75 26 1 279 352 23 97 1.56e-24 102
MsaG012380 AT5G07100.3 45.882 85 44 1 495 577 24 108 3.44e-15 75.9
MsaG012380 AT5G07100.3 54.688 64 28 1 280 342 141 204 4.06e-14 72.4
MsaG012380 AT5G07100.1 68.519 108 25 1 450 557 198 296 4.52e-42 155
MsaG012380 AT5G07100.1 64.000 75 26 1 279 352 116 190 4.40e-24 103
MsaG012380 AT5G07100.1 34.899 149 78 3 442 577 59 201 4.35e-16 80.1
MsaG012380 AT5G07100.1 54.688 64 28 1 280 342 234 297 5.14e-14 73.9
MsaG012380 AT4G30935.1 36.678 289 127 9 271 557 159 393 4.84e-42 159
MsaG012380 AT4G30935.1 52.000 75 31 2 272 345 327 397 6.64e-17 84.7
MsaG012380 AT4G12020.3 39.662 237 97 7 281 515 469 661 6.06e-40 159
MsaG012380 AT4G12020.3 41.304 92 43 2 494 575 467 557 3.52e-12 70.9
MsaG012380 AT4G12020.10 39.662 237 97 7 281 515 469 661 6.27e-40 159
MsaG012380 AT4G12020.10 41.304 92 43 2 494 575 467 557 3.46e-12 70.9
MsaG012380 AT4G12020.6 39.662 237 97 7 281 515 469 661 6.28e-40 159
MsaG012380 AT4G12020.6 41.304 92 43 2 494 575 467 557 3.57e-12 70.9
MsaG012380 AT4G12020.8 39.662 237 97 7 281 515 469 661 6.28e-40 159
MsaG012380 AT4G12020.8 41.304 92 43 2 494 575 467 557 3.57e-12 70.9
MsaG012380 AT4G12020.1 39.662 237 97 7 281 515 469 661 6.50e-40 159
MsaG012380 AT4G12020.1 41.304 92 43 2 494 575 467 557 3.84e-12 70.5
MsaG012380 AT4G12020.9 39.662 237 97 7 281 515 469 661 6.50e-40 159
MsaG012380 AT4G12020.9 41.304 92 43 2 494 575 467 557 3.84e-12 70.5
MsaG012380 AT4G12020.4 39.662 237 97 7 281 515 469 661 7.39e-40 159
MsaG012380 AT4G12020.4 41.304 92 43 2 494 575 467 557 3.62e-12 70.9
MsaG012380 AT4G12020.7 39.662 237 97 7 281 515 469 661 7.42e-40 159
MsaG012380 AT4G12020.7 41.304 92 43 2 494 575 467 557 3.97e-12 70.5
MsaG012380 AT4G12020.2 39.662 237 97 7 281 515 469 661 7.61e-40 159
MsaG012380 AT4G12020.2 41.304 92 43 2 494 575 467 557 3.81e-12 70.9
MsaG012380 AT4G12020.5 39.662 237 97 7 281 515 402 594 1.00e-39 158
MsaG012380 AT4G12020.5 41.304 92 43 2 494 575 400 490 3.91e-12 70.5
MsaG012380 AT4G12020.11 39.662 237 97 7 281 515 469 661 1.20e-39 157
MsaG012380 AT4G12020.11 41.304 92 43 2 494 575 467 557 5.46e-12 70.1
MsaG012380 AT3G01080.1 71.579 95 24 1 460 554 274 365 8.64e-39 149
MsaG012380 AT3G01080.1 72.857 70 18 1 278 347 165 233 3.59e-27 115
MsaG012380 AT3G01080.1 55.556 63 27 1 495 557 167 228 2.24e-14 76.3
MsaG012380 AT3G01080.1 58.333 60 24 1 280 338 306 365 3.66e-14 75.9
MsaG012380 AT3G01080.2 71.579 95 24 1 460 554 312 403 9.49e-39 150
MsaG012380 AT3G01080.2 72.857 70 18 1 278 347 203 271 3.68e-27 115
MsaG012380 AT3G01080.2 55.556 63 27 1 495 557 205 266 1.89e-14 77.0
MsaG012380 AT3G01080.2 58.333 60 24 1 280 338 344 403 2.61e-14 76.3
MsaG012380 AT2G30250.1 66.265 83 28 0 474 556 307 389 2.10e-34 135
MsaG012380 AT2G30250.1 67.692 65 21 0 279 343 165 229 5.53e-22 99.4
MsaG012380 AT2G30250.1 56.923 65 27 1 281 344 329 393 5.42e-14 75.1
MsaG012380 AT2G30250.1 47.561 82 37 2 473 554 149 224 1.69e-12 70.5
MsaG012380 AT2G04880.2 57.692 104 44 0 460 563 248 351 3.48e-33 134
MsaG012380 AT2G04880.2 64.407 59 21 0 280 338 111 169 2.54e-20 95.1
MsaG012380 AT2G04880.2 51.220 82 35 2 281 361 284 361 2.91e-17 85.5
MsaG012380 AT2G04880.2 36.036 111 64 3 493 598 109 217 3.41e-14 75.9
MsaG012380 AT2G04880.1 57.692 104 44 0 460 563 272 375 5.73e-33 133
MsaG012380 AT2G04880.1 64.407 59 21 0 280 338 111 169 2.90e-20 95.1
MsaG012380 AT2G04880.1 51.220 82 35 2 281 361 308 385 3.14e-17 85.9
MsaG012380 AT2G04880.1 50.000 64 31 1 493 556 109 171 5.32e-13 72.4
MsaG012380 AT2G44745.1 62.353 85 31 1 476 560 126 209 6.56e-31 121
MsaG012380 AT2G44745.1 61.404 57 21 1 280 335 145 201 9.54e-17 80.1
MsaG012380 AT1G55600.1 61.628 86 33 0 471 556 283 368 1.75e-29 123
MsaG012380 AT1G55600.1 58.333 60 24 1 281 339 308 367 2.27e-15 79.7
MsaG012380 AT4G18170.1 50.435 115 46 1 452 555 118 232 1.23e-28 117
MsaG012380 AT4G18170.1 63.333 60 21 1 280 338 172 231 6.08e-17 82.8
MsaG012380 AT4G39410.1 48.462 130 50 3 444 568 184 301 1.95e-28 116
MsaG012380 AT4G39410.1 52.632 57 26 1 280 335 223 279 8.79e-13 70.1
MsaG012380 AT1G69310.4 62.195 82 31 0 470 551 122 203 2.12e-28 115
MsaG012380 AT1G69310.4 61.404 57 21 1 280 335 147 203 5.93e-16 79.3
MsaG012380 AT1G69310.2 62.195 82 31 0 470 551 122 203 2.12e-28 115
MsaG012380 AT1G69310.2 61.404 57 21 1 280 335 147 203 5.93e-16 79.3
MsaG012380 AT1G69310.1 62.195 82 31 0 470 551 122 203 2.12e-28 115
MsaG012380 AT1G69310.1 61.404 57 21 1 280 335 147 203 5.93e-16 79.3
MsaG012380 AT3G01080.3 72.857 70 18 1 278 347 203 271 2.85e-28 116
MsaG012380 AT3G01080.3 55.556 63 27 1 495 557 205 266 4.73e-15 77.4
MsaG012380 AT1G29860.1 62.821 78 29 0 479 556 120 197 2.86e-27 112
MsaG012380 AT1G29860.1 60.938 64 24 1 280 342 136 199 2.77e-17 83.2
MsaG012380 AT2G47260.1 53.535 99 44 1 479 577 158 254 2.62e-26 111
MsaG012380 AT2G47260.1 57.812 64 26 1 280 342 174 237 8.15e-16 79.7
MsaG012380 AT5G13080.1 50.000 100 50 0 454 553 26 125 3.18e-26 105
MsaG012380 AT5G13080.1 51.724 58 27 1 280 336 67 124 1.17e-14 72.0
MsaG012380 AT5G46350.1 58.750 80 33 0 481 560 169 248 7.91e-26 109
MsaG012380 AT5G46350.1 57.143 70 28 2 280 348 183 251 4.53e-17 83.6
MsaG012380 AT3G01970.1 65.278 72 25 0 482 553 52 123 1.68e-25 103
MsaG012380 AT3G01970.1 53.125 64 27 2 280 341 65 127 5.68e-14 70.1
MsaG012380 AT5G49520.1 61.842 76 29 0 479 554 205 280 2.19e-25 109
MsaG012380 AT5G49520.1 60.000 60 23 1 280 338 221 280 9.40e-16 80.5
MsaG012380 AT5G26170.1 61.429 70 27 0 482 551 100 169 7.11e-25 102
MsaG012380 AT5G26170.1 52.632 57 26 1 280 335 113 169 1.32e-14 72.8
MsaG012380 AT4G04450.2 54.545 88 39 1 470 556 173 260 1.47e-24 107
MsaG012380 AT4G04450.2 44.565 92 49 2 250 339 168 259 1.90e-15 79.7
MsaG012380 AT5G41570.1 57.895 76 32 0 476 551 79 154 1.82e-24 101
MsaG012380 AT5G41570.1 31.373 153 101 3 186 336 5 155 3.82e-15 74.7
MsaG012380 AT5G64810.1 57.746 71 30 0 482 552 97 167 2.17e-24 101
MsaG012380 AT5G64810.1 49.123 57 28 1 280 335 110 166 5.07e-11 63.2
MsaG012380 AT4G04450.1 54.545 88 39 1 470 556 267 354 6.24e-24 106
MsaG012380 AT4G04450.1 44.565 92 49 2 250 339 262 353 4.44e-15 79.3
MsaG012380 AT2G46130.1 55.000 80 36 0 472 551 7 86 6.39e-24 97.4
MsaG012380 AT2G46130.1 63.793 58 20 1 280 336 30 87 1.43e-18 82.0
MsaG012380 AT1G64000.1 56.579 76 33 0 476 551 95 170 9.72e-24 99.8
MsaG012380 AT1G64000.1 53.448 58 26 1 280 336 114 171 1.67e-15 75.9
MsaG012380 AT1G69310.3 58.537 82 30 1 470 551 122 199 1.14e-23 102
MsaG012380 AT1G69310.3 56.140 57 20 2 280 335 147 199 2.13e-11 65.9
MsaG012380 AT4G22070.4 53.488 86 39 1 470 554 272 357 2.70e-23 105
MsaG012380 AT4G22070.4 54.098 61 26 2 281 339 298 358 3.41e-14 76.3
MsaG012380 AT4G22070.3 53.488 86 39 1 470 554 272 357 2.70e-23 105
MsaG012380 AT4G22070.3 54.098 61 26 2 281 339 298 358 3.41e-14 76.3
MsaG012380 AT4G22070.2 53.488 86 39 1 470 554 272 357 2.70e-23 105
MsaG012380 AT4G22070.2 54.098 61 26 2 281 339 298 358 3.41e-14 76.3
MsaG012380 AT4G22070.1 53.488 86 39 1 470 554 272 357 2.70e-23 105
MsaG012380 AT4G22070.1 54.098 61 26 2 281 339 298 358 3.41e-14 76.3
MsaG012380 AT3G62340.1 50.943 106 48 1 471 572 94 199 7.11e-23 99.8
MsaG012380 AT3G62340.1 56.667 60 25 1 280 338 118 177 6.67e-15 76.3
MsaG012380 AT1G62300.1 54.878 82 36 1 474 554 291 372 1.39e-22 102
MsaG012380 AT1G62300.1 54.098 61 26 2 281 339 313 373 2.65e-14 76.6
MsaG012380 AT1G68150.1 50.000 90 44 1 479 567 219 308 2.84e-22 99.8
MsaG012380 AT1G68150.1 53.333 60 26 2 281 338 236 295 1.36e-12 70.5
MsaG012380 AT5G15130.2 48.193 83 42 1 478 559 168 250 4.41e-22 100
MsaG012380 AT5G15130.1 46.067 89 47 1 472 559 204 292 5.10e-22 100
MsaG012380 AT1G18860.1 52.564 78 36 1 478 554 222 299 1.30e-21 99.8
MsaG012380 AT1G18860.1 53.333 60 26 2 281 338 240 299 2.97e-12 70.1
MsaG012380 AT4G01720.1 54.545 77 34 1 479 554 223 299 1.14e-20 96.3
MsaG012380 AT4G01720.1 43.299 97 51 3 247 339 204 300 8.56e-14 75.1
MsaG012380 AT2G21900.1 41.509 106 47 3 455 556 76 170 5.78e-20 89.4
MsaG012380 AT2G21900.1 50.000 60 29 1 280 338 109 168 4.62e-13 69.3
MsaG012380 AT2G23320.1 47.368 95 39 3 460 553 215 299 1.32e-19 90.9
MsaG012380 AT2G23320.1 37.931 87 51 3 251 335 212 297 1.06e-11 67.0
MsaG012380 AT4G24240.1 49.474 95 37 3 460 553 256 340 1.84e-19 91.3
MsaG012380 AT4G24240.1 35.849 106 62 4 232 335 237 338 1.86e-12 69.7
MsaG012380 AT2G46130.2 51.250 80 35 1 472 551 7 82 2.31e-19 84.3
MsaG012380 AT2G46130.2 58.621 58 19 2 280 336 30 83 4.22e-14 69.3
MsaG012380 AT5G28650.1 39.231 130 68 3 433 561 210 329 2.82e-19 90.1
MsaG012380 AT5G28650.1 52.632 57 25 2 281 335 263 319 3.42e-11 65.9
MsaG012380 AT3G04670.1 44.660 103 46 3 460 561 237 329 1.44e-18 88.2
MsaG012380 AT3G04670.1 50.847 59 27 2 281 337 263 321 5.28e-11 65.1
MsaG012380 AT4G31550.1 47.059 102 50 2 466 563 217 318 1.59e-18 87.8
MsaG012380 AT4G31550.1 39.080 87 50 3 251 335 218 303 6.67e-12 67.8
MsaG012380 AT2G24570.1 43.636 110 59 2 466 574 214 321 3.06e-18 87.0
MsaG012380 AT2G24570.1 39.080 87 50 3 251 335 215 300 8.39e-12 67.4
MsaG012380 AT4G31550.2 51.087 92 41 2 476 563 226 317 3.10e-18 87.0
MsaG012380 AT4G31550.2 43.421 76 40 3 262 335 228 302 2.15e-11 66.2
MsaG012380 AT1G80840.1 51.562 64 30 1 493 555 144 207 4.30e-18 86.3
MsaG012380 AT1G80840.1 50.820 61 28 2 280 338 146 206 2.15e-12 68.9
MsaG012380 AT5G43290.1 59.322 59 24 0 493 551 112 170 5.41e-18 85.1
MsaG012380 AT5G43290.1 58.621 58 23 1 279 335 113 170 7.91e-13 70.1
MsaG012380 AT2G30590.1 34.965 143 79 4 410 551 241 370 6.21e-18 87.0
MsaG012380 AT2G30590.1 40.659 91 51 3 251 339 285 374 7.78e-14 74.3
MsaG012380 AT4G23550.1 46.753 77 40 1 484 559 129 205 8.69e-18 85.5
MsaG012380 AT4G23550.1 49.296 71 33 3 281 349 141 210 3.41e-11 65.5
MsaG012380 AT1G69810.2 43.158 95 50 3 478 570 128 220 3.34e-17 84.0
MsaG012380 AT1G69810.2 43.056 72 38 2 281 349 146 217 1.03e-11 67.4
MsaG012380 AT1G69810.1 43.158 95 50 3 478 570 186 278 5.72e-17 84.0
MsaG012380 AT1G69810.1 43.056 72 38 2 281 349 204 275 9.74e-12 67.8
MsaG012380 AT2G25000.2 45.205 73 39 1 494 565 102 174 7.10e-17 80.9
MsaG012380 AT2G25000.2 49.180 61 29 2 280 338 103 163 3.08e-11 64.3
MsaG012380 AT2G25000.4 45.205 73 39 1 494 565 102 174 7.10e-17 80.9
MsaG012380 AT2G25000.4 49.180 61 29 2 280 338 103 163 3.08e-11 64.3
MsaG012380 AT2G25000.3 45.205 73 39 1 494 565 124 196 1.18e-16 80.9
MsaG012380 AT2G25000.3 49.180 61 29 2 280 338 125 185 4.55e-11 64.3
MsaG012380 AT2G25000.1 45.205 73 39 1 494 565 145 217 1.95e-16 80.5
MsaG012380 AT2G25000.1 49.180 61 29 2 280 338 146 206 6.90e-11 63.9
MsaG012380 AT4G31800.2 50.000 64 31 1 494 556 110 173 4.00e-16 79.0
MsaG012380 AT4G31800.2 47.541 61 30 2 280 338 111 171 6.39e-12 66.6
MsaG012380 AT4G31800.1 50.000 64 31 1 494 556 175 238 7.74e-16 79.3
MsaG012380 AT4G31800.1 47.541 61 30 2 280 338 176 236 9.28e-12 67.4
MsaG012380 AT4G01250.1 41.748 103 44 2 458 559 106 193 1.24e-15 78.6
MsaG012380 AT4G01250.1 47.887 71 34 3 281 349 129 198 1.40e-11 66.6
MsaG012380 AT2G40740.1 40.594 101 55 3 256 351 149 249 1.56e-15 78.2
MsaG012380 AT2G40740.3 40.594 101 55 3 256 351 158 258 1.81e-15 78.2
MsaG012380 AT5G52830.1 43.529 85 46 2 476 559 147 230 5.05e-15 77.8
MsaG012380 AT5G52830.1 50.685 73 33 3 279 349 164 235 4.29e-13 71.6
MsaG012380 AT1G29280.1 51.562 64 29 2 277 338 71 134 1.92e-14 74.3
MsaG012380 AT1G29280.1 47.692 65 33 1 496 559 75 139 3.91e-14 73.6
MsaG012380 AT1G30650.1 38.000 100 56 2 461 559 188 282 6.18e-14 75.1
MsaG012380 AT1G30650.1 50.000 60 28 2 281 338 218 277 1.90e-11 67.4
MsaG012380 AT2G34830.1 38.000 100 56 2 461 559 186 280 6.20e-14 75.1
MsaG012380 AT2G34830.1 51.667 60 27 2 281 338 216 275 6.59e-12 68.6
MsaG012380 AT2G34830.2 38.000 100 56 2 461 559 195 289 6.53e-14 75.1
MsaG012380 AT2G34830.2 51.667 60 27 2 281 338 225 284 6.53e-12 68.6
MsaG012380 AT2G38470.1 58.065 62 21 2 495 554 184 242 1.46e-13 74.3
MsaG012380 AT3G58710.1 48.387 62 31 1 496 556 72 133 2.55e-13 71.2
MsaG012380 AT3G58710.1 52.381 63 28 2 278 338 69 131 9.90e-13 69.7
MsaG012380 AT3G58710.2 47.826 69 33 2 496 561 71 139 2.69e-13 71.2
MsaG012380 AT3G58710.2 52.381 63 28 2 278 338 68 130 9.69e-13 69.7
MsaG012380 AT5G45050.4 47.692 65 33 1 496 559 1042 1106 1.57e-12 71.6
MsaG012380 AT5G45050.4 50.769 65 30 2 276 338 1037 1101 4.46e-12 70.5
MsaG012380 AT5G45050.1 47.692 65 33 1 496 559 1181 1245 1.91e-12 71.6
MsaG012380 AT5G45050.1 50.769 65 30 2 276 338 1176 1240 4.79e-12 70.1
MsaG012380 AT5G45050.2 47.692 65 33 1 496 559 1153 1217 1.93e-12 71.6
MsaG012380 AT5G45050.2 50.769 65 30 2 276 338 1148 1212 4.85e-12 70.1
MsaG012380 AT4G23810.1 45.902 61 29 2 278 334 156 216 2.87e-12 68.9
MsaG012380 AT5G24110.1 39.175 97 48 5 272 363 106 196 6.29e-12 67.8
MsaG012380 AT4G11070.2 43.056 72 35 3 278 343 107 178 3.69e-11 65.1
MsaG012380 AT4G11070.1 43.056 72 35 3 278 343 139 210 4.40e-11 65.1
MsaG012380 AT5G45260.1 32.710 107 63 4 250 349 1175 1279 5.70e-11 66.6
MsaG012380 AT2G46400.1 27.429 175 103 5 448 616 65 221 7.26e-11 64.3

Find 199 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCGACTTGGAGGAGGTTTC+GGG 0.221606 3:-23390402 None:intergenic
TTCAAGCCTACAACAGATTC+AGG 0.225658 3:+23389257 MsaT012380.1:CDS
CGGCGACTTGGAGGAGGTTT+CGG 0.234020 3:-23390403 None:intergenic
GCAGTGGCGGTGACCTAGGC+TGG 0.244486 3:+23390500 MsaT012380.1:CDS
TATAGATTATCTCCGTTATA+TGG 0.256932 3:-23390363 None:intergenic
AACAATTTGCAAACTCAAAA+TGG 0.274108 3:+23390622 MsaT012380.1:CDS
CGCTACCCTTAACTTGCTTT+TGG 0.278034 3:-23390264 None:intergenic
ATATAGCTGGAGCTGGTAAT+TGG 0.284730 3:+23390542 MsaT012380.1:CDS
GGTTATCGGTGGCGGAAATA+TGG 0.285913 3:+23390985 MsaT012380.1:CDS
CTTGGTTCGTTCAACCTTCC+CGG 0.305140 3:+23391413 MsaT012380.1:CDS
CTTTCTCAGCAATCCCTTCA+TGG 0.309397 3:+23390007 MsaT012380.1:CDS
TCCTCGCAAGCAAAGCTTCC+TGG 0.313451 3:+23391518 MsaT012380.1:CDS
GGATATAATTGGAGAAAATA+TGG 0.316349 3:+23390241 MsaT012380.1:CDS
AAAAGACAATTCTACACATT+TGG 0.325774 3:+23390135 MsaT012380.1:CDS
TATAACGGAGATAATCTATA+AGG 0.331910 3:+23390366 MsaT012380.1:CDS
CATCGGAGGATGGATATAAT+TGG 0.333091 3:+23390230 MsaT012380.1:CDS
GATGAAAATCTTGCACTAAA+TGG 0.339970 3:+23388148 MsaT012380.1:CDS
ATGTAGTGATCACAGATTTA+AGG 0.340679 3:-23391232 None:intergenic
GTTGGATTGGTTACCGTATC+CGG 0.341255 3:-23390602 None:intergenic
CCCTGTGGTTCACCATGTTC+AGG 0.344262 3:-23390475 None:intergenic
AATGGAAACTTTCCTGTTGT+TGG 0.346418 3:-23389134 None:intergenic
TCGAGAACTCGACTTGTTCT+CGG 0.350344 3:-23388335 None:intergenic
GGTACTACTCACGTTGATTC+AGG 0.352096 3:+23390643 MsaT012380.1:CDS
TCCACATTTGGTTCTCCCTT+TGG 0.354303 3:-23391611 None:intergenic
TCTTGCACTAAATGGTGATT+GGG 0.360621 3:+23388156 MsaT012380.1:CDS
AACTTATTCTCTCAGGAAAC+TGG 0.362818 3:+23390870 MsaT012380.1:intron
CACTCATGGTAGTGTATCAT+TGG 0.368402 3:+23390723 MsaT012380.1:CDS
CATGAATCCCATTTCATTTG+CGG 0.377014 3:-23391585 None:intergenic
CGTGTTCCTTGCAAATTCAT+TGG 0.378555 3:+23388519 MsaT012380.1:CDS
AACTTTCCTGTTGTTGGAGA+TGG 0.388150 3:-23389128 None:intergenic
ATGTTAAGGCCGCCGCGTTC+AGG 0.388731 3:-23391641 None:intergenic
GCAACGCGCCGCAAATGAAA+TGG 0.390178 3:+23391577 MsaT012380.1:CDS
GGCGGCCTTAACATGCAAAA+TGG 0.396093 3:+23391650 MsaT012380.1:CDS
GAACCTTGCAATGTCGGGAT+TGG 0.397116 3:+23391490 MsaT012380.1:CDS
TGTTGTTGCTGCATCATGAA+TGG 0.397926 3:-23391554 None:intergenic
AACCTTGCAATGTCGGGATT+GGG 0.398700 3:+23391491 MsaT012380.1:CDS
TTGTGAACTTGAGATGGTTC+AGG 0.400693 3:-23391374 None:intergenic
GCAGCTCAAGGACAAGCTTC+TGG 0.405122 3:+23391326 MsaT012380.1:CDS
ATCTTGCACTAAATGGTGAT+TGG 0.405599 3:+23388155 MsaT012380.1:CDS
GATAGAATTGCTGCTCGAAC+TGG 0.408486 3:+23388370 MsaT012380.1:CDS
TCAGGATTAGCGTCCACATT+TGG 0.408554 3:-23391623 None:intergenic
AAGTTTCCATTTGTTTCAAA+TGG 0.409529 3:+23389146 MsaT012380.1:CDS
TACTACAAGTGCACCAATGC+AGG 0.412359 3:+23391170 MsaT012380.1:CDS
ATGCCTGACCGGCGACTTGG+AGG 0.413497 3:-23390412 None:intergenic
CCAAGTCGCCGGTCAGGCAT+AGG 0.416054 3:+23390415 MsaT012380.1:CDS
TTGGATTGGTTACCGTATCC+GGG 0.416255 3:-23390601 None:intergenic
CAAAAGTAGCCTCCATCTTA+AGG 0.416713 3:+23390087 MsaT012380.1:CDS
ATAACGGAGATAATCTATAA+GGG 0.422795 3:+23390367 MsaT012380.1:CDS
ACGTCCGAATTCAGAACATT+CGG 0.423285 3:+23388246 MsaT012380.1:CDS
CCTCCTCCAAGTCGCCGGTC+AGG 0.425165 3:+23390409 MsaT012380.1:CDS
ATATGGCCAAAAGCAAGTTA+AGG 0.425865 3:+23390258 MsaT012380.1:CDS
GACTCGTTGGTTGCTGGTGT+TGG 0.426208 3:+23390199 MsaT012380.1:CDS
AACGGAGACTCGTTGGTTGC+TGG 0.427288 3:+23390193 MsaT012380.1:CDS
GGAAGCTTTGCTTGCGAGGA+AGG 0.428637 3:-23391515 None:intergenic
AATGGGTTCATAGGCATTCC+AGG 0.429862 3:-23391536 None:intergenic
ATGACCTAGCTGCTGTCTGC+CGG 0.431091 3:-23391432 None:intergenic
CCTTACAGTGCACCCTGCAT+TGG 0.431542 3:-23391183 None:intergenic
GAGGGACAAGATGGTGATTC+CGG 0.435458 3:+23388283 MsaT012380.1:CDS
AAGAATGACTACCTTGGGTT+GGG 0.441222 3:-23391030 None:intergenic
CTTCCCGAATGTTCTGAATT+CGG 0.445390 3:-23388250 None:intergenic
TGACAGCTGATGTTGCTTCA+AGG 0.445597 3:-23390576 None:intergenic
ATGGTTCAGGTCTATGCATA+TGG 0.448997 3:-23391361 None:intergenic
GGTCATCCGCATGGCTTCTT+CGG 0.452741 3:+23391449 MsaT012380.1:CDS
TAAAGTGAGGTTTGAATGGC+TGG 0.453770 3:+23388121 None:intergenic
GAGGGCCCTGAATCTGTTGT+AGG 0.453857 3:-23389263 None:intergenic
CCTATGCCTGACCGGCGACT+TGG 0.458013 3:-23390415 None:intergenic
GTTGTTGCTGCATCATGAAT+GGG 0.462753 3:-23391553 None:intergenic
GGAGAATCTAAAAGTGTAGT+AGG 0.463976 3:-23388496 None:intergenic
GTGTACTCATTCAAATTGTC+CGG 0.469086 3:+23390309 MsaT012380.1:CDS
ATTATGAATCACATGCCTCT+TGG 0.469433 3:+23391695 MsaT012380.1:CDS
CTGTCGAACCTTGCAATGTC+GGG 0.470366 3:+23391485 MsaT012380.1:CDS
TATGGCCAAAAGCAAGTTAA+GGG 0.471248 3:+23390259 MsaT012380.1:CDS
ATGTTGCCATTTGAAACAAA+TGG 0.473438 3:-23389152 None:intergenic
ATATCCTCGATGATGGTTAT+CGG 0.475694 3:+23390971 MsaT012380.1:CDS
CGGAAAACTCTGCCTTAAGA+TGG 0.485915 3:-23390099 None:intergenic
CCAATGCAGGGTGCACTGTA+AGG 0.487294 3:+23391183 MsaT012380.1:CDS
CAACGCGCCGCAAATGAAAT+GGG 0.487752 3:+23391578 MsaT012380.1:CDS
CGTCCGAATTCAGAACATTC+GGG 0.488948 3:+23388247 MsaT012380.1:CDS
GATAACTTGTATCGCTCAAG+TGG 0.489377 3:-23388309 None:intergenic
GGTGGCAGTGGCGGTGACCT+AGG 0.491981 3:+23390496 MsaT012380.1:CDS
GCACAGCCATCTCCAACAAC+AGG 0.493338 3:+23389122 MsaT012380.1:CDS
GTACAGAAGGGAAATATAGC+TGG 0.494656 3:+23390529 MsaT012380.1:CDS
GAGTTTGCAAATTGTTGGAT+TGG 0.499841 3:-23390615 None:intergenic
TGACTGCTGGAACGAGCAGC+GGG 0.501885 3:-23391281 None:intergenic
TCCTGAACATGGTGAACCAC+AGG 0.504125 3:+23390474 MsaT012380.1:CDS
TGCATCATGAATGGGTTCAT+AGG 0.504266 3:-23391545 None:intergenic
AATTCAGAACATTCGGGAAG+TGG 0.514532 3:+23388253 MsaT012380.1:CDS
CAAGTCGCCGGTCAGGCATA+GGG 0.514587 3:+23390416 MsaT012380.1:CDS
GGTGAACCACAGGGTGGCAG+TGG 0.518041 3:+23390484 MsaT012380.1:CDS
CCTGTCGAACCTTGCAATGT+CGG 0.519344 3:+23391484 MsaT012380.1:CDS
ATCGAGGATATCTACTTCGC+TGG 0.520413 3:-23390959 None:intergenic
CAGTGGCGGTGACCTAGGCT+GGG 0.521688 3:+23390501 MsaT012380.1:CDS
CTAGCTGCTGTCTGCCGGGA+AGG 0.521771 3:-23391427 None:intergenic
ATTCGCATTGACGTGACTGC+TGG 0.522171 3:-23391294 None:intergenic
TCCAGGAAGCTTTGCTTGCG+AGG 0.522306 3:-23391519 None:intergenic
CCGACATTGCAAGGTTCGAC+AGG 0.522335 3:-23391484 None:intergenic
CCTGACCGGCGACTTGGAGG+AGG 0.523850 3:-23390409 None:intergenic
TTCTCATGAGGGCCATATAA+CGG 0.530629 3:+23390351 MsaT012380.1:CDS
GAACTCGACTTGTTCTCGGT+TGG 0.530653 3:-23388331 None:intergenic
TGACCTAGCTGCTGTCTGCC+GGG 0.531026 3:-23391431 None:intergenic
TCAGCTGTCAACCCCGGATA+CGG 0.534204 3:+23390589 MsaT012380.1:CDS
TGGTGTTGGCGGTACTCCAT+CGG 0.535867 3:+23390213 MsaT012380.1:CDS
TAAGAATGACTACCTTGGGT+TGG 0.541313 3:-23391031 None:intergenic
AATGGCATGAGGCCTTCGCT+TGG 0.541703 3:+23391395 MsaT012380.1:CDS
GGAAGAGCAAGCAGATGAAG+AGG 0.543715 3:+23390156 MsaT012380.1:CDS
AGGCTGGGCTAATGTACAGA+AGG 0.548184 3:+23390516 MsaT012380.1:CDS
CTGAAGCTTCAACACCATGA+AGG 0.548464 3:-23390021 None:intergenic
ATGCTCTCTGTATTCAACCT+TGG 0.549716 3:-23388403 None:intergenic
GAAGCTTTGCTTGCGAGGAA+GGG 0.549966 3:-23391514 None:intergenic
CCAGGCGGTATAGTCAAGTA+AGG 0.550484 3:-23388466 None:intergenic
TCCACTTGCATGTCAGCATG+AGG 0.551146 3:-23390448 None:intergenic
TGTATCGCTCAAGTGGGTAC+CGG 0.551680 3:-23388302 None:intergenic
GGCCCAATCCCGACATTGCA+AGG 0.552372 3:-23391493 None:intergenic
TCAAGCCTACAACAGATTCA+GGG 0.552504 3:+23389258 MsaT012380.1:CDS
ATGGGATTCATGTTACCAAA+GGG 0.552557 3:+23391596 MsaT012380.1:CDS
GAACCACAGGGTGGCAGTGG+CGG 0.552598 3:+23390487 MsaT012380.1:CDS
ACTCATGGTAGTGTATCATT+GGG 0.552943 3:+23390724 MsaT012380.1:CDS
TAGTTGACCCTATGCCTGAC+CGG 0.554027 3:-23390423 None:intergenic
TCGTTGGTTGCTGGTGTTGG+CGG 0.559827 3:+23390202 MsaT012380.1:CDS
GAAGAAGAGGAAGACGATCA+AGG 0.561217 3:+23390700 MsaT012380.1:CDS
AGGGACCTTGGACTTGGACT+AGG 0.564318 3:-23388184 None:intergenic
CCCTCATGCTGACATGCAAG+TGG 0.564823 3:+23390447 MsaT012380.1:CDS
GTACACTTGTAGTAACTTCG+AGG 0.567336 3:-23390292 None:intergenic
GAGGGAGAACAAAGAGTCAA+CGG 0.570062 3:+23390175 MsaT012380.1:CDS
TCTGTACATTAGCCCAGCCT+AGG 0.570398 3:-23390513 None:intergenic
GTAGTCTGAACAACAACTCT+AGG 0.571480 3:-23390937 None:intergenic
GAAGTAGATATCCTCGATGA+TGG 0.573669 3:+23390964 MsaT012380.1:CDS
AAGGGAAATATAGCTGGAGC+TGG 0.574752 3:+23390535 MsaT012380.1:CDS
CAATGAATTTGCAAGGAACA+CGG 0.575971 3:-23388518 None:intergenic
CGAAACCTCCTCCAAGTCGC+CGG 0.578429 3:+23390404 MsaT012380.1:CDS
GGTAGAACTGAGGGACAAGA+TGG 0.580548 3:+23388274 MsaT012380.1:CDS
TGAAGCTTCAACACCATGAA+GGG 0.585732 3:-23390020 None:intergenic
CAATTATATCCATCCTCCGA+TGG 0.586613 3:-23390229 None:intergenic
TCGATGATGGTTATCGGTGG+CGG 0.587391 3:+23390977 MsaT012380.1:CDS
ATGAATCAGAGTCTAAAAGA+AGG 0.588175 3:+23390764 MsaT012380.1:CDS
GAAAGTAGAACGTTCTCATG+AGG 0.589600 3:+23390339 MsaT012380.1:CDS
AACTCACCAATGAATTTGCA+AGG 0.592002 3:-23388525 None:intergenic
GGCGGTACTCCATCGGAGGA+TGG 0.594165 3:+23390220 MsaT012380.1:CDS
GAGAACAAGTCGAGTTCTCG+AGG 0.596736 3:+23388337 MsaT012380.1:CDS
AACAACTCTAGGCTCGCGAA+TGG 0.599268 3:-23390926 None:intergenic
GACTTGGAGGAGGTTTCGGG+TGG 0.599626 3:-23390399 None:intergenic
GAACTGGATTTAATGCTCCA+AGG 0.600329 3:+23388386 MsaT012380.1:CDS
CGTTGATTCAGGAGATGCAG+TGG 0.602532 3:+23390654 MsaT012380.1:CDS
AATGAATTTGCAAGGAACAC+GGG 0.604026 3:-23388517 None:intergenic
ATGCCATTGTGAACTTGAGA+TGG 0.604389 3:-23391380 None:intergenic
AAAGTAGAACGTTCTCATGA+GGG 0.604575 3:+23390340 MsaT012380.1:CDS
TCGGGAAGTGGTAGAACTGA+GGG 0.606371 3:+23388265 MsaT012380.1:CDS
GAAGACGATCAAGGCACTCA+TGG 0.606644 3:+23390709 MsaT012380.1:CDS
CCACTTGCATGTCAGCATGA+GGG 0.606802 3:-23390447 None:intergenic
GCAACATCAGCTGTCAACCC+CGG 0.607436 3:+23390583 MsaT012380.1:CDS
TACACTTGTAGTAACTTCGA+GGG 0.609634 3:-23390291 None:intergenic
GTCTACCTAGTCCAAGTCCA+AGG 0.614182 3:+23388179 MsaT012380.1:CDS
TAACGGAGATAATCTATAAG+GGG 0.614320 3:+23390368 MsaT012380.1:CDS
CCTTACTTGACTATACCGCC+TGG 0.615366 3:+23388466 MsaT012380.1:CDS
AAGAGTCAACGGAGACTCGT+TGG 0.615925 3:+23390186 MsaT012380.1:CDS
TATGGACAGAAAGTTGTCAA+AGG 0.617805 3:+23391003 MsaT012380.1:CDS
AATGCTTCTAACGCAGCTCA+AGG 0.620924 3:+23391314 MsaT012380.1:CDS
CTTCCCGGCAGACAGCAGCT+AGG 0.621175 3:+23391428 MsaT012380.1:CDS
GAAGAGCAAGCAGATGAAGA+GGG 0.623139 3:+23390157 MsaT012380.1:CDS
AAAACTCTGCCTTAAGATGG+AGG 0.626789 3:-23390096 None:intergenic
GTGACTGCTGGAACGAGCAG+CGG 0.626891 3:-23391282 None:intergenic
CTTGCACTAAATGGTGATTG+GGG 0.627891 3:+23388157 MsaT012380.1:CDS
CTCAAGTTCACAATGGCATG+AGG 0.628993 3:+23391384 MsaT012380.1:CDS
AAAGTGAGGTTTGAATGGCT+GGG 0.630620 3:+23388122 None:intergenic
ACTACAAGTGCACCAATGCA+GGG 0.634462 3:+23391171 MsaT012380.1:CDS
AATGGGATTCATGTTACCAA+AGG 0.635351 3:+23391595 MsaT012380.1:CDS
TCTGTGATCACTACATACGA+GGG 0.638313 3:+23391239 MsaT012380.1:CDS
ATCTGTGATCACTACATACG+AGG 0.641100 3:+23391238 MsaT012380.1:CDS
GAATCATATGCTGAGATGAG+TGG 0.642399 3:+23390892 MsaT012380.1:CDS
TGTATCATTGGGTTATGATG+CGG 0.643412 3:+23390735 MsaT012380.1:CDS
TCAAAGGAAATCCCAACCCA+AGG 0.645747 3:+23391019 MsaT012380.1:CDS
TGTTGTAGGCTTGAAAGCGA+AGG 0.648946 3:-23389249 None:intergenic
TGGATTGGTTACCGTATCCG+GGG 0.651936 3:-23390600 None:intergenic
TCAATCTCAAAGAGTTGATG+CGG 0.655003 3:+23390045 MsaT012380.1:CDS
TCCTCGATGATGGTTATCGG+TGG 0.657777 3:+23390974 MsaT012380.1:CDS
CCTGAACATGGTGAACCACA+GGG 0.659823 3:+23390475 MsaT012380.1:CDS
GTGCACTGTAAGGAAGCATG+TGG 0.665453 3:+23391193 MsaT012380.1:CDS
CAAGTGGACAATCCTGAACA+TGG 0.665803 3:+23390463 MsaT012380.1:CDS
ACCAAAGGGAGAACCAAATG+TGG 0.665868 3:+23391610 MsaT012380.1:CDS
AACGGAGATAATCTATAAGG+GGG 0.668962 3:+23390369 MsaT012380.1:CDS
TGTTGGCGGTACTCCATCGG+AGG 0.670376 3:+23390216 MsaT012380.1:CDS
AGGTTGAACGAACCAAGCGA+AGG 0.670429 3:-23391407 None:intergenic
TTCGGGAAGTGGTAGAACTG+AGG 0.674120 3:+23388264 MsaT012380.1:CDS
TCACCGCCACTGCCACCCTG+TGG 0.678158 3:-23390490 None:intergenic
GGCTGGGCTAATGTACAGAA+GGG 0.678675 3:+23390517 MsaT012380.1:CDS
ATAACTTGTATCGCTCAAGT+GGG 0.689016 3:-23388308 None:intergenic
TCATTGGGTTATGATGCGGA+AGG 0.689115 3:+23390739 MsaT012380.1:CDS
CAGCAGCTAGGTCATCCGCA+TGG 0.689731 3:+23391440 MsaT012380.1:CDS
CTGATGATAATTCTGAGCTG+CGG 0.709325 3:-23389175 None:intergenic
AACAAGTCGAGTTCTCGAGG+TGG 0.724082 3:+23388340 MsaT012380.1:CDS
GAACCATCTCAAGTTCACAA+TGG 0.726157 3:+23391377 MsaT012380.1:CDS
TTCATGCCGAAGAAGCCATG+CGG 0.727689 3:-23391455 None:intergenic
AGTGTAGTAGGACTAAGACC+AGG 0.734205 3:-23388484 None:intergenic
GACTGCTGGAACGAGCAGCG+GGG 0.738619 3:-23391280 None:intergenic
GACGCTAATCCTGAACGCGG+CGG 0.752010 3:+23391632 MsaT012380.1:CDS
GCCACCGATAACCATCATCG+AGG 0.756754 3:-23390975 None:intergenic
GTGGACGCTAATCCTGAACG+CGG 0.765043 3:+23391629 MsaT012380.1:CDS
GAACATGGTGAACCACAGGG+TGG 0.772249 3:+23390478 MsaT012380.1:CDS
GTAGTAGGACTAAGACCAGG+CGG 0.775032 3:-23388481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 23388136 23391730 23388136 ID=MsaG012380
Chr3 mRNA 23388136 23391730 23388136 ID=MsaT012380.1;Parent=MsaG012380
Chr3 exon 23388136 23388540 23388136 ID=MsaT012380.1.exon1;Parent=MsaT012380.1
Chr3 CDS 23388136 23388540 23388136 ID=cds.MsaT012380.1;Parent=MsaT012380.1
Chr3 exon 23389122 23389310 23389122 ID=MsaT012380.1.exon2;Parent=MsaT012380.1
Chr3 CDS 23389122 23389310 23389122 ID=cds.MsaT012380.1;Parent=MsaT012380.1
Chr3 exon 23389992 23390785 23389992 ID=MsaT012380.1.exon3;Parent=MsaT012380.1
Chr3 CDS 23389992 23390785 23389992 ID=cds.MsaT012380.1;Parent=MsaT012380.1
Chr3 exon 23390885 23391040 23390885 ID=MsaT012380.1.exon4;Parent=MsaT012380.1
Chr3 CDS 23390885 23391040 23390885 ID=cds.MsaT012380.1;Parent=MsaT012380.1
Chr3 exon 23391166 23391730 23391166 ID=MsaT012380.1.exon5;Parent=MsaT012380.1
Chr3 CDS 23391166 23391730 23391166 ID=cds.MsaT012380.1;Parent=MsaT012380.1
Gene Sequence

>MsaT012380.1

ATGGCTGGGATTGATGAAAATCTTGCACTAAATGGTGATTGGGGTCTACCTAGTCCAAGTCCAAGGTCCCTTTTTTCTAGACTGCTAGAAGAAGATAATAATAATGTAATACGTCCGAATTCAGAACATTCGGGAAGTGGTAGAACTGAGGGACAAGATGGTGATTCCGGTACCCACTTGAGCGATACAAGTTATCCAACCGAGAACAAGTCGAGTTCTCGAGGTGGTCTTGTTGATAGAATTGCTGCTCGAACTGGATTTAATGCTCCAAGGTTGAATACAGAGAGCATTAGATCTACTGAACTCTCACTCAATTCTGAGATTCAGTCACCTTACTTGACTATACCGCCTGGTCTTAGTCCTACTACACTTTTAGATTCTCCCGTGTTCCTTGCAAATTCATTGGCACAGCCATCTCCAACAACAGGAAAGTTTCCATTTGTTTCAAATGGCAACATCCGCAGCTCAGAATTATCATCAGATGTTCAAGAAAAATCTAAACATAATGGCTTTAATGATATTTATGCATCGTCCTTCGCTTTCAAGCCTACAACAGATTCAGGGCCCTCTTTTTATCAAGGTGCTGGTAGAAATATGAATACAACTACACTTTCTCAGCAATCCCTTCATGGTGTTGAAGCTTCAGTTCAATCTCAAAGAGTTGATGCGGTCAATGTTCAAACTGAGAACAAAAGTAGCCTCCATCTTAAGGCAGAGTTTTCCGACTCGCCACCTCAAAAAGACAATTCTACACATTTGGAAGAGCAAGCAGATGAAGAGGGAGAACAAAGAGTCAACGGAGACTCGTTGGTTGCTGGTGTTGGCGGTACTCCATCGGAGGATGGATATAATTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGCGAGTACCCTCGAAGTTACTACAAGTGTACTCATTCAAATTGTCCGGTTAAAAAGAAAGTAGAACGTTCTCATGAGGGCCATATAACGGAGATAATCTATAAGGGGGCACACAACCACCCGAAACCTCCTCCAAGTCGCCGGTCAGGCATAGGGTCAACTAACCCTCATGCTGACATGCAAGTGGACAATCCTGAACATGGTGAACCACAGGGTGGCAGTGGCGGTGACCTAGGCTGGGCTAATGTACAGAAGGGAAATATAGCTGGAGCTGGTAATTGGAAGCATGACAACCTTGAAGCAACATCAGCTGTCAACCCCGGATACGGTAACCAATCCAACAATTTGCAAACTCAAAATGGTACTACTCACGTTGATTCAGGAGATGCAGTGGATCGCTCGTCTACATTTTCAAATGAAGAAGAGGAAGACGATCAAGGCACTCATGGTAGTGTATCATTGGGTTATGATGCGGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCTGAGATGAGTGGAGCTACTAGAGCCATTCGCGAGCCTAGAGTTGTTGTTCAGACTACCAGCGAAGTAGATATCCTCGATGATGGTTATCGGTGGCGGAAATATGGACAGAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACTGTAAGGAAGCATGTGGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATACGAGGGAAAGCACAATCACGATGTCCCCGCTGCTCGTTCCAGCAGTCACGTCAATGCGAATGCTTCTAACGCAGCTCAAGGACAAGCTTCTGGTCTTCTTCAAAACCATATGCATAGACCTGAACCATCTCAAGTTCACAATGGCATGAGGCCTTCGCTTGGTTCGTTCAACCTTCCCGGCAGACAGCAGCTAGGTCATCCGCATGGCTTCTTCGGCATGAATCAACACCTGTCGAACCTTGCAATGTCGGGATTGGGCCCTTCCTCGCAAGCAAAGCTTCCTGGAATGCCTATGAACCCATTCATGATGCAGCAACAACAGCAACGCGCCGCAAATGAAATGGGATTCATGTTACCAAAGGGAGAACCAAATGTGGACGCTAATCCTGAACGCGGCGGCCTTAACATGCAAAATGGCTCATCATCAATGTATCAAGATATTATGAATCACATGCCTCTTGGACCTCACATGTAA

Protein sequence

>MsaT012380.1

MAGIDENLALNGDWGLPSPSPRSLFSRLLEEDNNNVIRPNSEHSGSGRTEGQDGDSGTHLSDTSYPTENKSSSRGGLVDRIAARTGFNAPRLNTESIRSTELSLNSEIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRSSELSSDVQEKSKHNGFNDIYASSFAFKPTTDSGPSFYQGAGRNMNTTTLSQQSLHGVEASVQSQRVDAVNVQTENKSSLHLKAEFSDSPPQKDNSTHLEEQADEEGEQRVNGDSLVAGVGGTPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSHEGHITEIIYKGAHNHPKPPPSRRSGIGSTNPHADMQVDNPEHGEPQGGSGGDLGWANVQKGNIAGAGNWKHDNLEATSAVNPGYGNQSNNLQTQNGTTHVDSGDAVDRSSTFSNEEEEDDQGTHGSVSLGYDAEGDESESKRRKLESYAEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARSSSHVNANASNAAQGQASGLLQNHMHRPEPSQVHNGMRPSLGSFNLPGRQQLGHPHGFFGMNQHLSNLAMSGLGPSSQAKLPGMPMNPFMMQQQQQRAANEMGFMLPKGEPNVDANPERGGLNMQNGSSSMYQDIMNHMPLGPHM*