AlfalfaGEDB | MsaG012436

M. sativa ssp. caerulea / MsaG012436

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012436	XP_027334564.1	75.000	180	42	1	19	195	108	287	2.17e-84	267

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012436	sp\|Q6LA43\|APRR2_ARATH	69.231	78	21	2	119	195	293	368	2.19e-28	114
MsaG012436	sp\|Q6LA43\|APRR2_ARATH	62.500	72	25	1	19	90	116	185	5.61e-20	90.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012436	A0A072UQC7	100.000	55	0	0	19	73	109	163	4.67e-25	112
MsaG012436	A0A072UQC7	82.394	142	24	1	54	195	241	381	3.08e-72	238

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TFs/TRs:

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Gene ID	Type	Classification
MsaG012436	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012436	MtrunA17_Chr4g0054981	82.394	142	24	1	54	195	241	381	8.94e-76	237
MsaG012436	MtrunA17_Chr4g0054981	100.000	55	0	0	19	73	109	163	1.09e-28	111
MsaG012436	MtrunA17_Chr5g0400241	62.698	126	46	1	70	195	258	382	3.94e-42	148
MsaG012436	MtrunA17_Chr5g0400241	60.674	89	30	1	19	107	109	192	3.20e-24	99.0
MsaG012436	MtrunA17_Chr4g0040481	57.333	75	32	0	121	195	155	229	8.81e-27	105
MsaG012436	MtrunA17_Chr2g0324891	62.121	66	25	0	121	186	158	223	6.72e-26	102
MsaG012436	MtrunA17_Chr2g0304841	35.754	179	104	3	8	184	104	273	5.07e-23	95.9
MsaG012436	MtrunA17_Chr3g0137101	36.196	163	92	3	20	182	106	256	1.12e-22	94.7
MsaG012436	MtrunA17_Chr1g0161431	34.444	180	96	4	20	194	109	271	1.39e-21	91.7
MsaG012436	MtrunA17_Chr4g0074401	36.196	163	78	5	20	177	115	256	2.80e-21	90.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012436	AT4G18020.8	69.231	78	21	2	119	195	293	368	1.88e-29	113
MsaG012436	AT4G18020.8	62.500	72	25	1	19	90	116	185	4.83e-21	90.1
MsaG012436	AT4G18020.11	69.231	78	21	2	119	195	293	368	1.88e-29	113
MsaG012436	AT4G18020.11	62.500	72	25	1	19	90	116	185	4.83e-21	90.1
MsaG012436	AT4G18020.4	69.231	78	21	2	119	195	293	368	1.88e-29	113
MsaG012436	AT4G18020.4	62.500	72	25	1	19	90	116	185	4.83e-21	90.1
MsaG012436	AT4G18020.5	69.231	78	21	2	119	195	293	368	1.88e-29	113
MsaG012436	AT4G18020.5	62.500	72	25	1	19	90	116	185	4.83e-21	90.1
MsaG012436	AT4G18020.10	69.231	78	21	2	119	195	293	368	1.88e-29	113
MsaG012436	AT4G18020.10	62.500	72	25	1	19	90	116	185	4.83e-21	90.1

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Find 37 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATATTGGATCTAATGAAAG+TGG	0.519493	3:+24544647	MsaT012436.1:CDS
AATATTTCTGAGCTTGTCCT+CGG	0.546887	3:-24544032	None:intergenic
AATGTGAGATAAAAGCTAAT+CGG	0.462021	3:+24544375	MsaT012436.1:CDS
ACAACATCTGCAAATAAAGT+AGG	0.528162	3:+24544338	MsaT012436.1:CDS
ACACGCTAAATATATGGCTG+TGG	0.520230	3:-24542539	None:intergenic
ACCACAATTACCAAATGTGA+AGG	0.551748	3:+24544292	MsaT012436.1:CDS
ACCTTCACATTTGGTAATTG+TGG	0.453921	3:-24544293	None:intergenic
AGCCATATATTTAGCGTGTC+AGG	0.438269	3:+24542543	MsaT012436.1:CDS
AGGACAAGCTCAGAAATATT+TGG	0.362029	3:+24544035	MsaT012436.1:CDS
ATCGGAAATGGCTAAATACA+AGG	0.595293	3:+24544897	MsaT012436.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	24542511	24544922	24542511	ID=MsaG012436
Chr3	mRNA	24542511	24544922	24542511	ID=MsaT012436.1;Parent=MsaG012436
Chr3	exon	24542511	24542564	24542511	ID=MsaT012436.1.exon1;Parent=MsaT012436.1
Chr3	CDS	24542511	24542564	24542511	ID=cds.MsaT012436.1;Parent=MsaT012436.1
Chr3	exon	24543998	24544075	24543998	ID=MsaT012436.1.exon2;Parent=MsaT012436.1
Chr3	CDS	24543998	24544075	24543998	ID=cds.MsaT012436.1;Parent=MsaT012436.1
Chr3	exon	24544164	24544409	24544164	ID=MsaT012436.1.exon3;Parent=MsaT012436.1
Chr3	CDS	24544164	24544409	24544164	ID=cds.MsaT012436.1;Parent=MsaT012436.1
Chr3	exon	24544567	24544707	24544567	ID=MsaT012436.1.exon4;Parent=MsaT012436.1
Chr3	CDS	24544567	24544707	24544567	ID=cds.MsaT012436.1;Parent=MsaT012436.1
Chr3	exon	24544854	24544922	24544854	ID=MsaT012436.1.exon5;Parent=MsaT012436.1
Chr3	CDS	24544854	24544922	24544854	ID=cds.MsaT012436.1;Parent=MsaT012436.1

Gene Sequence

>MsaT012436.1

ATGGATTCTTGGCATCAAGTCTCCAAGCCCACAGCCATATATTTAGCGTGTCAGCTTGGAGCAGTGGAGTTTCTCAGCAAACCACTCTCCGAGGACAAGCTCAGAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGTGTAAGTGCGCTGTCTGAATCACTGAAACCTGTCAAGGAATCTGTAGCCTCCATCTTGCAGATTCAAACAGATCTAAGTGTTGCTGACACTTCTAAGTGTGAGAGTGTTGTTTCACCACAATTACCAAATGTGAAGGTTCTAAACAATAGTGAAAGTAATACAACATCTGCAAATAAAGTAGGTATTCGCAGTCATAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCAGAGCTGCACAAAAAATTTGTGAAGGCAGTGGAGCAACTAGGCATTAATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAATATAGAATGCATAAGAGACATATCTTACCGAAGCAGGATGATCGGAAATGGCTAAATACAAGGTAG

Protein sequence

>MsaT012436.1

MDSWHQVSKPTAIYLACQLGAVEFLSKPLSEDKLRNIWQHVVHKAFNAGVSALSESLKPVKESVASILQIQTDLSVADTSKCESVVSPQLPNVKVLNNSESNTTSANKVGIRSHKCEIKANRKKMKVDWTPELHKKFVKAVEQLGINHAIPSRILDLMKVEGLTRHNVASHLQKYRMHKRHILPKQDDRKWLNTR*