AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG012454


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012454 MtrunA17_Chr3g0080351 91.086 359 8 1 229 563 486 844 0.0 681
MsaG012454 MtrunA17_Chr3g0080351 98.690 229 3 0 1 229 1 229 1.58e-160 479
MsaG012454 MtrunA17_Chr1g0207551 45.304 362 167 5 229 562 452 810 1.63e-88 290
MsaG012454 MtrunA17_Chr1g0207551 46.445 211 75 3 49 236 7 202 3.23e-44 168
MsaG012454 MtrunA17_Chr2g0329031 44.958 238 129 2 228 465 424 659 1.37e-56 202
MsaG012454 MtrunA17_Chr2g0329031 54.887 133 44 1 63 195 1 117 3.55e-37 147
MsaG012454 MtrunA17_Chr5g0440451 34.184 196 125 2 227 418 464 659 2.07e-30 126
MsaG012454 MtrunA17_Chr5g0448761 31.818 220 143 3 227 439 485 704 1.42e-29 124
MsaG012454 MtrunA17_Chr5g0448761 38.519 135 62 3 68 196 52 171 1.15e-15 80.5
MsaG012454 MtrunA17_Chr3g0118611 26.101 318 227 4 227 537 361 677 7.22e-29 121
MsaG012454 MtrunA17_Chr5g0448511 36.041 197 118 4 229 418 259 454 2.09e-25 110
MsaG012454 MtrunA17_Chr2g0291581 33.171 205 125 4 224 416 471 675 5.65e-23 103
MsaG012454 MtrunA17_Chr1g0202341 31.373 204 127 5 222 413 460 662 1.63e-19 92.4
MsaG012454 MtrunA17_Chr1g0202341 31.538 130 76 3 74 202 49 166 5.58e-12 68.6
MsaG012454 MtrunA17_Chr6g0477261 26.667 255 175 5 224 468 296 548 7.12e-18 87.4
MsaG012454 MtrunA17_Chr5g0441581 29.949 197 125 3 229 416 440 632 1.84e-17 85.9
MsaG012454 MtrunA17_Chr2g0296781 30.000 210 131 5 171 368 353 558 3.58e-17 85.1
MsaG012454 MtrunA17_Chr2g0329361 34.146 123 70 1 74 196 59 170 7.35e-17 80.5
MsaG012454 MtrunA17_Chr3g0078041 34.127 126 71 1 75 200 49 162 8.87e-16 77.0
MsaG012454 MtrunA17_Chr1g0203721 38.393 112 64 1 310 416 567 678 5.16e-15 78.6
MsaG012454 MtrunA17_Chr1g0203721 36.937 111 57 1 79 189 66 163 1.04e-12 71.2
MsaG012454 MtrunA17_Chr1g0196541 30.588 170 108 3 228 390 411 577 7.68e-15 77.8
MsaG012454 MtrunA17_Chr3g0082121 33.065 124 78 1 300 418 524 647 1.30e-14 77.0
MsaG012454 MtrunA17_Chr7g0233911 32.520 123 57 2 75 190 33 136 5.50e-13 68.6
MsaG012454 MtrunA17_Chr4g0033611 28.662 157 93 4 54 210 55 192 9.30e-13 68.6
MsaG012454 MtrunA17_Chr2g0329421 31.405 121 69 2 75 195 26 132 1.86e-12 66.6
MsaG012454 MtrunA17_Chr2g0324011 26.623 154 109 2 227 376 428 581 1.11e-11 67.4
MsaG012454 MtrunA17_Chr6g0458391 46.269 67 36 0 301 367 700 766 3.16e-11 66.2
MsaG012454 MtrunA17_Chr3g0088371 26.415 159 93 5 329 467 1 155 6.29e-11 62.0
MsaG012454 MtrunA17_Chr2g0287061 28.492 179 116 4 245 415 578 752 7.10e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012454 AT3G22170.2 53.333 360 140 4 230 563 482 839 9.10e-115 360
MsaG012454 AT3G22170.2 67.094 234 70 3 1 233 1 228 7.38e-100 321
MsaG012454 AT3G22170.1 53.333 360 140 4 230 563 482 839 9.10e-115 360
MsaG012454 AT3G22170.1 67.094 234 70 3 1 233 1 228 7.38e-100 321
MsaG012454 AT4G15090.1 43.017 358 177 6 229 562 472 826 1.06e-87 289
MsaG012454 AT4G15090.1 44.395 223 70 7 27 217 1 201 2.40e-43 166
MsaG012454 AT4G15090.5 43.017 358 177 6 229 562 472 826 1.06e-87 289
MsaG012454 AT4G15090.5 44.395 223 70 7 27 217 1 201 2.40e-43 166
MsaG012454 AT4G15090.3 43.017 358 177 6 229 562 472 826 1.06e-87 289
MsaG012454 AT4G15090.3 44.395 223 70 7 27 217 1 201 2.40e-43 166
MsaG012454 AT4G15090.2 43.017 358 177 6 229 562 472 826 1.06e-87 289
MsaG012454 AT4G15090.2 44.395 223 70 7 27 217 1 201 2.40e-43 166
MsaG012454 AT4G15090.4 43.017 358 177 6 229 562 472 826 1.06e-87 289
MsaG012454 AT4G15090.4 44.395 223 70 7 27 217 1 201 2.40e-43 166
MsaG012454 AT1G76320.3 42.478 226 128 1 224 449 404 627 9.54e-56 199
MsaG012454 AT1G76320.3 55.172 116 36 1 80 195 1 100 5.40e-33 134
MsaG012454 AT1G76320.2 42.478 226 128 1 224 449 404 627 1.37e-55 200
MsaG012454 AT1G76320.2 55.172 116 36 1 80 195 1 100 6.29e-33 134
MsaG012454 AT1G76320.1 42.478 226 128 1 224 449 404 627 1.40e-55 200
MsaG012454 AT1G76320.1 55.172 116 36 1 80 195 1 100 6.04e-33 134
MsaG012454 AT1G76320.4 42.478 226 128 1 224 449 404 627 1.40e-55 200
MsaG012454 AT1G76320.4 55.172 116 36 1 80 195 1 100 6.04e-33 134
MsaG012454 AT4G19990.1 40.645 310 174 4 224 530 358 660 1.15e-49 182
MsaG012454 AT4G19990.1 54.444 90 25 3 116 197 4 85 1.10e-19 93.6
MsaG012454 AT4G19990.3 40.645 310 174 4 224 530 415 717 1.16e-49 183
MsaG012454 AT4G19990.3 54.887 133 44 3 73 197 18 142 3.47e-34 138
MsaG012454 AT4G19990.4 40.645 310 174 4 224 530 415 717 1.16e-49 183
MsaG012454 AT4G19990.4 54.887 133 44 3 73 197 18 142 3.47e-34 138
MsaG012454 AT4G19990.5 40.645 310 174 4 224 530 415 717 1.26e-49 183
MsaG012454 AT4G19990.5 54.887 133 44 3 73 197 18 142 4.12e-34 138
MsaG012454 AT4G19990.6 40.645 310 174 4 224 530 415 717 1.28e-49 183
MsaG012454 AT4G19990.6 54.887 133 44 3 73 197 18 142 5.46e-34 137
MsaG012454 AT4G19990.2 40.645 310 174 4 224 530 415 717 1.28e-49 183
MsaG012454 AT4G19990.2 54.887 133 44 3 73 197 18 142 5.46e-34 137
MsaG012454 AT4G19990.7 40.645 310 174 4 224 530 429 731 1.43e-49 183
MsaG012454 AT4G19990.7 54.887 133 44 3 73 197 32 156 3.44e-34 138
MsaG012454 AT2G32250.7 33.533 334 195 5 224 533 370 700 8.19e-45 169
MsaG012454 AT2G32250.7 53.982 113 36 1 80 192 1 97 2.55e-29 123
MsaG012454 AT2G32250.5 33.533 334 195 5 224 533 411 741 8.29e-45 169
MsaG012454 AT2G32250.5 53.913 115 37 1 78 192 40 138 2.66e-30 126
MsaG012454 AT2G32250.2 33.533 334 195 5 224 533 411 741 8.39e-45 170
MsaG012454 AT2G32250.2 53.913 115 37 1 78 192 40 138 3.08e-30 126
MsaG012454 AT2G32250.4 33.533 334 195 5 224 533 411 741 8.39e-45 170
MsaG012454 AT2G32250.4 53.913 115 37 1 78 192 40 138 3.08e-30 126
MsaG012454 AT2G32250.8 33.533 334 195 5 224 533 370 700 8.64e-45 169
MsaG012454 AT2G32250.8 53.982 113 36 1 80 192 1 97 2.61e-29 123
MsaG012454 AT2G32250.6 33.533 334 195 5 224 533 411 741 9.87e-45 169
MsaG012454 AT2G32250.6 53.913 115 37 1 78 192 40 138 3.32e-30 126
MsaG012454 AT2G32250.1 33.533 334 195 5 224 533 411 741 9.87e-45 169
MsaG012454 AT2G32250.1 53.913 115 37 1 78 192 40 138 3.32e-30 126
MsaG012454 AT2G32250.3 33.533 334 195 5 224 533 411 741 9.87e-45 169
MsaG012454 AT2G32250.3 53.913 115 37 1 78 192 40 138 3.32e-30 126
MsaG012454 AT2G27110.3 34.975 203 122 4 227 423 294 492 1.21e-28 121
MsaG012454 AT2G27110.2 34.975 203 122 4 227 423 439 637 1.53e-28 121
MsaG012454 AT2G27110.1 34.975 203 122 4 227 423 439 637 1.53e-28 121
MsaG012454 AT4G38170.1 33.498 203 127 3 229 425 261 461 4.05e-27 115
MsaG012454 AT4G38180.1 31.441 229 143 3 227 441 494 722 1.62e-25 112
MsaG012454 AT4G38180.1 38.760 129 59 2 73 196 70 183 6.99e-17 84.7
MsaG012454 AT1G52520.1 36.715 207 115 6 224 416 487 691 1.78e-24 108
MsaG012454 AT1G80010.1 28.283 198 134 3 227 416 516 713 7.10e-18 87.8
MsaG012454 AT3G59470.3 31.655 139 81 2 57 195 51 175 3.22e-16 79.0
MsaG012454 AT3G59470.1 31.655 139 81 2 57 195 51 175 3.22e-16 79.0
MsaG012454 AT2G43280.1 33.333 135 78 1 57 191 3 125 4.08e-16 77.8
MsaG012454 AT3G59470.2 31.655 139 81 2 57 195 63 187 4.42e-16 79.0
MsaG012454 AT3G07500.1 34.074 135 69 3 74 206 31 147 9.95e-15 73.9
MsaG012454 AT4G12850.4 33.621 116 61 2 75 190 10 109 5.27e-13 67.0
MsaG012454 AT4G12850.1 33.621 116 61 2 75 190 10 109 8.95e-13 67.4
MsaG012454 AT5G18960.2 33.333 126 58 2 69 194 204 303 1.55e-12 70.9
MsaG012454 AT5G18960.2 32.061 131 63 1 72 202 39 143 3.92e-11 66.6
MsaG012454 AT5G18960.2 29.744 195 130 4 229 418 590 782 8.25e-11 65.5
MsaG012454 AT5G18960.1 33.333 126 58 2 69 194 204 303 1.55e-12 70.9
MsaG012454 AT5G18960.1 32.061 131 63 1 72 202 39 143 3.92e-11 66.6
MsaG012454 AT5G18960.1 29.744 195 130 4 229 418 590 782 8.25e-11 65.5
MsaG012454 AT4G12850.2 33.600 125 66 3 67 190 1 109 1.60e-12 65.5
MsaG012454 AT3G06250.2 32.500 120 55 2 75 194 189 282 9.67e-12 68.6
MsaG012454 AT3G06250.2 30.102 196 128 4 229 418 566 758 2.22e-11 67.4
MsaG012454 AT3G06250.1 32.500 120 55 2 75 194 189 282 9.67e-12 68.6
MsaG012454 AT3G06250.1 30.102 196 128 4 229 418 566 758 2.22e-11 67.4
MsaG012454 AT3G06250.3 32.500 120 55 2 75 194 189 282 9.67e-12 68.6
MsaG012454 AT3G06250.3 30.102 196 128 4 229 418 566 758 2.22e-11 67.4
MsaG012454 AT1G10240.2 28.177 181 121 4 254 429 499 675 1.46e-11 67.8
MsaG012454 AT1G10240.1 28.177 181 121 4 254 429 499 675 1.46e-11 67.8
MsaG012454 AT2G43280.2 33.663 101 55 1 91 191 2 90 6.81e-11 61.6

Find 120 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGATATTGCAATGTTTA+AGG 0.172219 3:-24929443 MsaT012454.1:CDS
ACAAATCTTGAGCCACTTTC+TGG 0.189659 3:-24929415 MsaT012454.1:CDS
GATTGTTCAGTTGAACTTAA+TGG 0.233383 3:-24926918 MsaT012454.1:intron
CTGGTTTCGCATACAGCATT+AGG 0.246092 3:-24926598 MsaT012454.1:CDS
TTGGTGGTTCTTCAATATTC+TGG 0.248862 3:-24927837 MsaT012454.1:CDS
AGATACCCAAAGTAGAAATA+TGG 0.254157 3:-24927520 MsaT012454.1:CDS
CTTTCCCATATTTCTACTTT+GGG 0.301786 3:+24927515 None:intergenic
ATTGTTCAGTTGAACTTAAT+GGG 0.303892 3:-24926917 MsaT012454.1:intron
AAGTTTGCTTGTTCCAGATA+TGG 0.304206 3:-24929268 MsaT012454.1:CDS
CCATTGATCGAGCATATTCT+TGG 0.307582 3:+24929353 None:intergenic
ACCAGCCACGATGGTTATTA+TGG 0.311286 3:-24926746 MsaT012454.1:CDS
AAGATCCAAGCTGAGATTAT+TGG 0.311613 3:-24928032 MsaT012454.1:CDS
CCTTTAGAAAAGAGTGTTGC+TGG 0.318577 3:-24928080 MsaT012454.1:CDS
TTGTTTGTTCACTTACTGCC+TGG 0.318808 3:+24929050 None:intergenic
TGTCGGCTATTTGAATATAA+AGG 0.333196 3:-24927879 MsaT012454.1:CDS
TCATCCTGCCTGTCAAGTTT+AGG 0.337518 3:+24927993 None:intergenic
TGTTCACAGGGTGCATGATA+TGG 0.338272 3:-24927961 MsaT012454.1:CDS
TCAAAACTTGCAGGCACAAC+TGG 0.342872 3:-24926633 MsaT012454.1:intron
ACTTTCCCATATTTCTACTT+TGG 0.350583 3:+24927514 None:intergenic
GACGCTCAAGCGTGTCTTGA+TGG 0.353924 3:+24926168 None:intergenic
CCTACAGAAGCTGGTACATC+AGG 0.374818 3:-24927570 MsaT012454.1:CDS
AAAGAAGGCAAGATGGGAAA+TGG 0.381396 3:-24929120 MsaT012454.1:CDS
GGATCTTCTTGAATACTGTA+TGG 0.382498 3:+24928048 None:intergenic
AACTGTGGTGCTCTTACATT+AGG 0.395218 3:+24926201 None:intergenic
AAGAAGGCAAGATGGGAAAT+GGG 0.409702 3:-24929119 MsaT012454.1:CDS
CAAAAGCAGATTCTGATACT+TGG 0.411739 3:-24928133 MsaT012454.1:CDS
TGGTTTCGCATACAGCATTA+GGG 0.419366 3:-24926597 MsaT012454.1:intron
TCGAGCTCGTGGTCGGTTGA+AGG 0.420065 3:+24929222 None:intergenic
ATTGAGGTACATGCTCTAAA+TGG 0.425596 3:-24929487 MsaT012454.1:CDS
ACTTTGGGTATCTTCTTCAA+TGG 0.429012 3:+24927530 None:intergenic
CCAAGAATATGCTCGATCAA+TGG 0.430685 3:-24929353 MsaT012454.1:CDS
ACATCAAAGCATGCCTGGTT+TGG 0.435777 3:-24926720 MsaT012454.1:intron
AGGCAGAAGTGATGACTGTC+GGG 0.435993 3:-24927374 MsaT012454.1:CDS
GATACCCAAAGTAGAAATAT+GGG 0.442097 3:-24927519 MsaT012454.1:CDS
CAAGAATATGCTCGATCAAT+GGG 0.442288 3:-24929352 MsaT012454.1:CDS
CAAGAATCTGAAAATTCAAC+TGG 0.454460 3:-24929190 MsaT012454.1:CDS
TCTTGAGCCACTTTCTGGTA+TGG 0.454926 3:-24929410 MsaT012454.1:CDS
ATGAAACCATCTTGCAAGAC+AGG 0.455078 3:-24928169 MsaT012454.1:CDS
TTCATACCTGTCTTGCAAGA+TGG 0.458728 3:+24928163 None:intergenic
ACCATCGTGGCTGGTTGGTA+TGG 0.466535 3:+24926754 None:intergenic
GGGAATCAACAGACTCTTCA+AGG 0.466578 3:-24926872 MsaT012454.1:CDS
TGTTTGTTCACTTACTGCCT+GGG 0.477529 3:+24929051 None:intergenic
TGTTCACTTACTGCCTGGGC+TGG 0.481371 3:+24929055 None:intergenic
TTTGTATTCTGCAAACTGCC+TGG 0.482219 3:+24929006 None:intergenic
ATGAGACAAACGTTGTTCAC+AGG 0.483821 3:-24927974 MsaT012454.1:CDS
TTCTTTCTCATGTTCACCAG+TGG 0.488199 3:+24929606 None:intergenic
AGAAGAATCTGAACATATGC+TGG 0.503913 3:-24927742 MsaT012454.1:CDS
AATCTGAACATATGCTGGCT+AGG 0.505661 3:-24927737 MsaT012454.1:CDS
CTGGTTGGTATGGAACTCAT+TGG 0.506086 3:+24926764 None:intergenic
TCTTTCTCATGTTCACCAGT+GGG 0.508767 3:+24929607 None:intergenic
TTATCTTTGCCGACATGCAT+TGG 0.511455 3:-24927856 MsaT012454.1:CDS
GTATGGAATTCGAGTCTCAT+GGG 0.513881 3:-24929393 MsaT012454.1:CDS
AGCAAGAGTCCTACAGAAGC+TGG 0.514473 3:-24927579 MsaT012454.1:CDS
GATCTTCTTGAATACTGTAT+GGG 0.514955 3:+24928049 None:intergenic
AACATTGCAATATCAACTGT+GGG 0.516629 3:+24929448 None:intergenic
ACTAGACAACATGCAACAAA+TGG 0.519807 3:-24927349 MsaT012454.1:intron
CGTTTCAAAACATATTGAGA+TGG 0.523403 3:+24927801 None:intergenic
GAATGTATGCTGTGATGGCC+AGG 0.523831 3:-24929024 MsaT012454.1:CDS
TGTGCGTCTCATTTAGTGCA+TGG 0.524278 3:+24927628 None:intergenic
GGACAAAAGATGCAAAGGTC+AGG 0.524679 3:-24927776 MsaT012454.1:CDS
GGTATGGAATTCGAGTCTCA+TGG 0.526936 3:-24929394 MsaT012454.1:CDS
GGTGCACATCAAAGCATGCC+TGG 0.527959 3:-24926725 MsaT012454.1:CDS
AAAATTGCACAATGGAGGTA+TGG 0.528216 3:-24929536 MsaT012454.1:CDS
CTTGTCATCCTAAACTTGAC+AGG 0.529447 3:-24928001 MsaT012454.1:CDS
TGTTGGATTGTAGGTGAACT+CGG 0.535610 3:-24927397 MsaT012454.1:intron
TCATCCTAAACTTGACAGGC+AGG 0.538131 3:-24927997 MsaT012454.1:CDS
GCAGAATACAAAACTGTGGT+TGG 0.538665 3:-24928995 MsaT012454.1:CDS
AGGTATGGACGACAGACATA+TGG 0.540778 3:-24929521 MsaT012454.1:CDS
CTTTAGAAAAGAGTGTTGCT+GGG 0.540833 3:-24928079 MsaT012454.1:CDS
AAATTACGAACTTTATCGAA+TGG 0.541273 3:+24928953 None:intergenic
GTTTCAAAACATATTGAGAT+GGG 0.541753 3:+24927802 None:intergenic
TCATCATGGATATAGATCTC+AGG 0.543112 3:-24929633 None:intergenic
GCTGGTACATCAGGGGCTCA+TGG 0.543275 3:-24927561 MsaT012454.1:CDS
TCTTTGCCGACATGCATTGG+TGG 0.544560 3:-24927853 MsaT012454.1:CDS
TTCTGATACTTGGAATAAAG+TGG 0.545659 3:-24928123 MsaT012454.1:CDS
ATCTGAACATATGCTGGCTA+GGG 0.545736 3:-24927736 MsaT012454.1:CDS
AGCTGAGATTATTGGTGCAG+TGG 0.546997 3:-24928024 MsaT012454.1:CDS
CCAACACGTGATGATTACTA+CGG 0.549419 3:-24926893 MsaT012454.1:CDS
TGCATCTATAAATTCTCTTG+AGG 0.551832 3:+24929291 None:intergenic
ACCATAATAACCATCGTGGC+TGG 0.555757 3:+24926745 None:intergenic
GAGGCAGAAGTGATGACTGT+CGG 0.561734 3:-24927375 MsaT012454.1:CDS
TGCTTGTTCTGTCGAGCTCG+TGG 0.562836 3:+24929211 None:intergenic
TCGAATTCCATACCAGAAAG+TGG 0.566016 3:+24929403 None:intergenic
GGTTATTCATAGCTTTGTGA+AGG 0.566920 3:-24929098 MsaT012454.1:CDS
GACAGACATATGGTTGAAGC+TGG 0.568268 3:-24929511 MsaT012454.1:CDS
TCACTAAAACTGAGCGAAGA+GGG 0.569652 3:-24927684 MsaT012454.1:CDS
TGTTCTGTCGAGCTCGTGGT+CGG 0.571836 3:+24929215 None:intergenic
TATGGTTGAAGCTGGTATTG+AGG 0.573490 3:-24929503 MsaT012454.1:CDS
CTGCACCAATAATCTCAGCT+TGG 0.574589 3:+24928027 None:intergenic
AACTACACTTGATAACATGT+TGG 0.575276 3:-24929569 MsaT012454.1:CDS
TCAACAGACTCTTCAAGGAC+TGG 0.577433 3:-24926867 MsaT012454.1:intron
CTACAGAAGCTGGTACATCA+GGG 0.582637 3:-24927569 MsaT012454.1:CDS
CAGAGGTGTCTTGTATATGT+CGG 0.585513 3:-24927896 MsaT012454.1:CDS
AAGAAGAATGTATGCTGTGA+TGG 0.589551 3:-24929029 MsaT012454.1:CDS
AAACATTGCAATATCAACTG+TGG 0.593917 3:+24929447 None:intergenic
GCAAAGGTCAGGAATGTCAC+AGG 0.595173 3:-24927765 MsaT012454.1:CDS
CAACACGTGATGATTACTAC+GGG 0.600808 3:-24926892 MsaT012454.1:CDS
TGAGACAAACGTTGTTCACA+GGG 0.601018 3:-24927973 MsaT012454.1:CDS
TAATAACCATCGTGGCTGGT+TGG 0.607504 3:+24926749 None:intergenic
CCTGATGTACCAGCTTCTGT+AGG 0.610024 3:+24927570 None:intergenic
ACACTTGATAACATGTTGGA+AGG 0.620645 3:-24929565 MsaT012454.1:CDS
GAGGTACATGCTCTAAATGG+TGG 0.620892 3:-24929484 MsaT012454.1:CDS
CATTGCAATATCAACTGTGG+GGG 0.621147 3:+24929450 None:intergenic
ACGGTGGACAAAAGATGCAA+AGG 0.624855 3:-24927781 MsaT012454.1:CDS
CTTGCAAGACAGGTATGAAG+AGG 0.626376 3:-24928159 MsaT012454.1:CDS
ATAGATCTCAGGTTACCCAC+TGG 0.627040 3:-24929622 MsaT012454.1:CDS
GATGGATCTTCATGTAACTG+TGG 0.637509 3:+24926186 None:intergenic
TCCATACCAACCAGCCACGA+TGG 0.649328 3:-24926755 MsaT012454.1:CDS
CCGTAGTAATCATCACGTGT+TGG 0.653378 3:+24926893 None:intergenic
TTAGTGAAACATACCAAACC+AGG 0.659731 3:+24926707 None:intergenic
ATCACTAAAACTGAGCGAAG+AGG 0.659916 3:-24927685 MsaT012454.1:CDS
TACAGAAGCTGGTACATCAG+GGG 0.668012 3:-24927568 MsaT012454.1:CDS
GAAGAACCACCAATGCATGT+CGG 0.679278 3:+24927847 None:intergenic
TATGGAATTCGAGTCTCATG+GGG 0.685488 3:-24929392 MsaT012454.1:CDS
GGTGAATGAAGTAAAATCAG+AGG 0.688639 3:-24927913 MsaT012454.1:CDS
GGCAGAAGTGATGACTGTCG+GGG 0.689815 3:-24927373 MsaT012454.1:CDS
ACATTGCAATATCAACTGTG+GGG 0.697658 3:+24929449 None:intergenic
GTTTGCAGAATACAAAACTG+TGG 0.699066 3:-24928999 MsaT012454.1:CDS
TGGATTGTAGGTGAACTCGG+AGG 0.756855 3:-24927394 MsaT012454.1:intron
GTGCACCATAATAACCATCG+TGG 0.809451 3:+24926741 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 24926173 24929650 24926173 ID=MsaG012454
Chr3 mRNA 24926173 24929650 24926173 ID=MsaT012454.1;Parent=MsaG012454
Chr3 exon 24926173 24926229 24926173 ID=MsaT012454.1.exon7;Parent=MsaT012454.1
Chr3 CDS 24926173 24926229 24926173 ID=cds.MsaT012454.1;Parent=MsaT012454.1
Chr3 exon 24926598 24926642 24926598 ID=MsaT012454.1.exon6;Parent=MsaT012454.1
Chr3 CDS 24926598 24926642 24926598 ID=cds.MsaT012454.1;Parent=MsaT012454.1
Chr3 exon 24926721 24926789 24926721 ID=MsaT012454.1.exon5;Parent=MsaT012454.1
Chr3 CDS 24926721 24926789 24926721 ID=cds.MsaT012454.1;Parent=MsaT012454.1
Chr3 exon 24926868 24926930 24926868 ID=MsaT012454.1.exon4;Parent=MsaT012454.1
Chr3 CDS 24926868 24926930 24926868 ID=cds.MsaT012454.1;Parent=MsaT012454.1
Chr3 exon 24927350 24927406 24927350 ID=MsaT012454.1.exon3;Parent=MsaT012454.1
Chr3 CDS 24927350 24927406 24927350 ID=cds.MsaT012454.1;Parent=MsaT012454.1
Chr3 exon 24927479 24928192 24927479 ID=MsaT012454.1.exon2;Parent=MsaT012454.1
Chr3 CDS 24927479 24928192 24927479 ID=cds.MsaT012454.1;Parent=MsaT012454.1
Chr3 exon 24928964 24929650 24928964 ID=MsaT012454.1.exon1;Parent=MsaT012454.1
Chr3 CDS 24928964 24929650 24928964 ID=cds.MsaT012454.1;Parent=MsaT012454.1
Gene Sequence

>MsaT012454.1

ATGGATATAGATCTCAGGTTACCCACTGGTGAACATGAGAAAGAAGAAGAAGAAGAAACAACTACACTTGATAACATGTTGGAAGGTGAAGAAAAATTGCACAATGGAGGTATGGACGACAGACATATGGTTGAAGCTGGTATTGAGGTACATGCTCTAAATGGTGGAGATCTGAATTCCCCCACAGTTGATATTGCAATGTTTAAGGAAGATACAAATCTTGAGCCACTTTCTGGTATGGAATTCGAGTCTCATGGGGAAGCTTATTCTTTCTACCAAGAATATGCTCGATCAATGGGATTCAACACTGCAATACAAAATAGTCGCCGTTCAAAAACCTCAAGAGAATTTATAGATGCAAAGTTTGCTTGTTCCAGATATGGAACAAAACGAGAGTATGATAAATCCTTCAACCGACCACGAGCTCGACAGAACAAGCAAGAATCTGAAAATTCAACTGGTCGAAGATCTTGCTCTAAGACTGATTGTAAAGCAAGCATGCATGTAAAAAGAAGGCAAGATGGGAAATGGGTTATTCATAGCTTTGTGAAGGAGCATAATCACGAACTTTTACCAGCCCAGGCAGTAAGTGAACAAACAAGAAGAATGTATGCTGTGATGGCCAGGCAGTTTGCAGAATACAAAACTGTGGTTGGTATCAAGAATGAAAAGAGTCCATTCGATAAATATGAAACCATCTTGCAAGACAGGTATGAAGAGGAAGCAAAAGCAGATTCTGATACTTGGAATAAAGTGGCAACATTGAAAACTCCTTCACCTTTAGAAAAGAGTGTTGCTGGGATTTGTACCCATACAGTATTCAAGAAGATCCAAGCTGAGATTATTGGTGCAGTGGCTTGTCATCCTAAACTTGACAGGCAGGATGAGACAAACGTTGTTCACAGGGTGCATGATATGGAAATAAACAGAGACTTTTTTGTTGTGGTGAATGAAGTAAAATCAGAGGTGTCTTGTATATGTCGGCTATTTGAATATAAAGGTTATCTTTGCCGACATGCATTGGTGGTTCTTCAATATTCTGGTCATTCAGTGTTCCCATCTCAATATGTTTTGAAACGGTGGACAAAAGATGCAAAGGTCAGGAATGTCACAGGAGAAGAATCTGAACATATGCTGGCTAGGGTGCAACGATACAATGATTTATGTAATCGATCACTAAAACTGAGCGAAGAGGGTTCATTGTCTCAAGATAGTTATAGTATTGCATTCCATGCACTAAATGAGACGCACAAAAGTTGTGTGAGTGTTAACAATTCTAGCAAGAGTCCTACAGAAGCTGGTACATCAGGGGCTCATGGTCAGCTTTCCATTGAAGAAGATACCCAAAGTAGAAATATGGGAAAGTCAAACAAAAAGAAGAATCCAACTAAAAAGAAAAAGGTGAACTCGGAGGCAGAAGTGATGACTGTCGGGGCACTAGACAACATGCAACAAATGTTGAACTTAATGGGACCAACACGTGATGATTACTACGGGAATCAACAGACTCTTCAAGGACTGGGACCAATGAGTTCCATACCAACCAGCCACGATGGTTATTATGGTGCACATCAAAGCATGCCTGGTTTGGCACAACTGGATTTTTTGCGAACTGGTTTCGCATACAGCATTAGGGATGAACCTAATGTAAGAGCACCACAGTTACATGAAGATCCATCAAGACACGCTTGA

Protein sequence

>MsaT012454.1

MDIDLRLPTGEHEKEEEEETTTLDNMLEGEEKLHNGGMDDRHMVEAGIEVHALNGGDLNSPTVDIAMFKEDTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQNKQESENSTGRRSCSKTDCKASMHVKRRQDGKWVIHSFVKEHNHELLPAQAVSEQTRRMYAVMARQFAEYKTVVGIKNEKSPFDKYETILQDRYEEEAKADSDTWNKVATLKTPSPLEKSVAGICTHTVFKKIQAEIIGAVACHPKLDRQDETNVVHRVHDMEINRDFFVVVNEVKSEVSCICRLFEYKGYLCRHALVVLQYSGHSVFPSQYVLKRWTKDAKVRNVTGEESEHMLARVQRYNDLCNRSLKLSEEGSLSQDSYSIAFHALNETHKSCVSVNNSSKSPTEAGTSGAHGQLSIEEDTQSRNMGKSNKKKNPTKKKKVNSEAEVMTVGALDNMQQMLNLMGPTRDDYYGNQQTLQGLGPMSSIPTSHDGYYGAHQSMPGLAQLDFLRTGFAYSIRDEPNVRAPQLHEDPSRHA*