AlfalfaGEDB | MsaG012502

M. sativa ssp. caerulea / MsaG012502

KEGG: K00306 K11420
GO: GO:0000775 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008276 GO:0008361 GO:0009987 GO:0010468 GO:0016043 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0019222 GO:0019538 GO:0032259 GO:0032501 GO:0032502 GO:0032535 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0051276 GO:0060255 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0098687 GO:0099402 GO:0140096 GO:1901564
PFAM: PF02182.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012502	XP_013458869.1	96.241	665	21	3	1	662	1	664	0.0	1327

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012502	sp\|Q9FF80\|SUVH1_ARATH	56.588	592	237	7	70	661	98	669	0.0	691

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012502	A0A072UU96	96.241	665	21	3	1	662	1	664	0.0	1327

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TFs/TRs:

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Gene ID	Type	Classification
MsaG012502	TR	SET

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012502	MtrunA17_Chr3g0080761	96.241	665	21	3	1	662	1	664	0.0	1327
MsaG012502	MtrunA17_Chr8g0354821	59.797	689	230	8	15	661	4	687	0.0	847
MsaG012502	MtrunA17_Chr7g0255181	46.757	740	279	20	1	661	1	704	0.0	629
MsaG012502	MtrunA17_Chr5g0399801	41.450	538	294	13	125	659	567	1086	6.47e-122	388
MsaG012502	MtrunA17_Chr4g0003501	40.414	532	293	15	133	661	444	954	2.10e-113	363
MsaG012502	MtrunA17_Chr4g0003511	39.630	540	304	14	125	661	531	1051	3.42e-112	362
MsaG012502	MtrunA17_Chr8g0368911	40.546	476	251	12	172	631	290	749	3.67e-110	350
MsaG012502	MtrunA17_Chr8g0368901	41.239	468	255	12	174	631	299	756	1.50e-109	348
MsaG012502	MtrunA17_Chr1g0163051	37.058	537	299	14	108	631	135	645	1.42e-106	337
MsaG012502	MtrunA17_Chr8g0369301	40.179	448	247	9	194	631	300	736	4.80e-104	333

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012502	AT5G04940.2	56.588	592	237	7	70	661	98	669	0.0	691
MsaG012502	AT5G04940.1	56.588	592	237	7	70	661	98	669	0.0	691
MsaG012502	AT1G73100.1	51.180	678	294	9	6	661	6	668	0.0	686
MsaG012502	AT1G17770.1	43.351	579	295	12	98	662	134	693	1.60e-154	462
MsaG012502	AT2G24740.1	45.102	541	251	14	129	661	252	754	9.56e-148	447
MsaG012502	AT2G35160.5	37.797	590	309	19	80	661	218	757	8.37e-111	351
MsaG012502	AT2G35160.2	37.797	590	309	19	80	661	254	793	3.10e-110	351
MsaG012502	AT2G35160.3	37.797	590	309	19	80	661	254	793	3.10e-110	351
MsaG012502	AT2G35160.1	37.797	590	309	19	80	661	254	793	3.10e-110	351
MsaG012502	AT2G35160.4	37.797	590	309	19	80	661	254	793	3.10e-110	351

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Find 166 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAGGATAAAGGTTG+GGG	0.541211	3:-25949838	MsaT012502.1:CDS
AAACGTACCGATTTAAAAGC+TGG	0.530169	3:-25950795	MsaT012502.1:CDS
AACAGATTTCCAAACGGCAA+AGG	0.589578	3:+25950257	None:intergenic
AACCGGTTTGAAGCACCAAA+TGG	0.508329	3:-25949869	MsaT012502.1:CDS
AACCTAGTGCCTTTGCCGTT+TGG	0.360454	3:-25950266	MsaT012502.1:CDS
AACTTGTAGATGCCAAGGAA+TGG	0.553451	3:-25950833	MsaT012502.1:CDS
AAGAGGGTAGGATCAGTACC+TGG	0.602661	3:-25950732	MsaT012502.1:CDS
AAGCCGTTGGTTCATGAATG+TGG	0.569854	3:-25949937	MsaT012502.1:CDS
AAGGTTGGGGTCTTCGATCA+TGG	0.452431	3:-25949825	MsaT012502.1:CDS
AAGTGATACTGGAAGACTCT+CGG	0.599204	3:+25950170	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	25949339	25951327	25949339	ID=MsaG012502
Chr3	mRNA	25949339	25951327	25949339	ID=MsaT012502.1;Parent=MsaG012502
Chr3	exon	25949339	25951327	25949339	ID=MsaT012502.1.exon1;Parent=MsaT012502.1
Chr3	CDS	25949339	25951327	25949339	ID=cds.MsaT012502.1;Parent=MsaT012502.1

Gene Sequence

>MsaT012502.1

ATGGAAGAAGGGTTAGGTCAACACTCAGTTCCTCCCCCGGGTTCCATTGACAAGTATAAGATTCTGGATATTAAGCCTATAAGAAGTTTGATACCTGTTTTTTCAAGGAATCCTCAAGGTCAATCTTCAGGTCAGTATCCTTCTGGGTTTTCTCCATTTTTCCCATTTGGTGGACCTCATGATACTTCAACCGCAAAGCCAAGTAGAGCGATGCCGACTCCACTTCAAGCATTTAGGAGCCCTTTTGGAGAGGATGAGGATCTCAATGACAATGATGGTTTTAGCAACAAAAGAAGTGCGGCAGCATCACATTCAAGCCGGGTCAGATTGAAGAAGCATAAGGTATATAATGATGTTCATGTTGATATGAGTGGTTTAGTTGGTATAAGCCCAGGTCAAAGAGACAATGGTAACCGTGAAGTTGTTAATATTGTGCTCATGACATTTGATGCGCTAAGACGAAGGCTATCTCAACTTGTAGATGCCAAGGAATGGAACACAGGTTCGATCAAACGTACCGATTTAAAAGCTGGCAATATTTGTATGACCAAAGGAATTCGAACAAACACAGCGAAGAGGGTAGGATCAGTACCTGGAGTTGAGATTGGGGACATTTTCTTTTTCCGAATGGAAATGTGTGTTATCGGTTTGCATGCTCAATCGATGGGGGGGATTGATGCCTTGCATATCCAGGGTGACCGCGGGGAAGATACTTTGGCTGTTAGCATTGTTTCGTCAGGAGAATACGACGATGAAGCTGAGGATGGTGATGTTATAATTTATACCGGTCAGGGTGGGAATTTCAACAAGAAAGATAAGCATGTGTCAGATCAGAAGCTTCATAAGGGTAATCTTGCTTTGGATAGAAGTTCACGAACACACAATGAAATAAGAGTCATCCGAGGCATCAAAGATGCTGTGACTCCAGGTGCAAAAATCTATGTCTATGATGGTCTGTATAAAATTCAAGATTCATGGGTTGAAAAAGCAAAAGGAGGCGGTGGCTTGTTTAAGTATAAGTTGATAAGAGTGCCTGGACAACCTAGTGCCTTTGCCGTTTGGAAATCTGTTCAGAAGTGGAAAGCTGGTTTCCCTGCAAGGACTGGACTTATTCTTGCTGACCTCTCCTCGGGAGCCGAGAGTCTTCCAGTATCACTTGTCAATGAAGTCGATAACGTTAAGTCACCTGCCTTTTTCACATATTTCCACTCTCTTAGACATCCGAAATCATTCAGTTTAATGCAGCCTTCACATAGTTGCAGCTGTAGTGGTAAAAAAGCATGTGTCCCTGGCGATTTGGACTGCTCATGCATTCGGAGAAACGAAGGTGATTTTCCTTATATTATCAATGGAGTTCTGGCGAATCGGAAGCCGTTGGTTCATGAATGTGGCCCCACATGTCAGTGTTTTCCTAACTGCAAAAATCGAGTATCCCAAACCGGTTTGAAGCACCAAATGGAAGTGTTCAAAACAAAGGATAAAGGTTGGGGTCTTCGATCATGGGATCCTATTCGTGCTGGTGCTTTTATTTGCGAGTATGCAGGAGAAGTTATCGATAAAGCTAGGTTAAGTCAGCTTGTACAAGAAGGAGATACTGATGAGTATGTTTTCGATACAACCCGTATTTATGAATCTTTCAAGTGGAATTATGAGCCTAAGTTACTAGAAGAAGCGACCACAAACGAGTCTAGTGAGGATTATGCTTTGCCACACCCTCTTATTATAAATGCTAAGAATGTTGGAAATGTGGCTAGATTCATGAATCATAGTTGCTCTCCAAATGTTTTCTGGCAGCCTGTCTTATACGAAGAGAACAACCAATCCTTTCTCCATGTTGCATTTTTTGCATTGAGACATATTCCACCAATGCATGAGTTAACATATGATTATGGTTCTGACCGTTCCAATCATACCGAGGGTAGCAGTGCACGCAAAGGTAGAAAGAAATGCTTATGTGGATCATCAAACTGCCGCGGTTCTTTTACTTGA

Protein sequence

>MsaT012502.1

MEEGLGQHSVPPPGSIDKYKILDIKPIRSLIPVFSRNPQGQSSGQYPSGFSPFFPFGGPHDTSTAKPSRAMPTPLQAFRSPFGEDEDLNDNDGFSNKRSAAASHSSRVRLKKHKVYNDVHVDMSGLVGISPGQRDNGNREVVNIVLMTFDALRRRLSQLVDAKEWNTGSIKRTDLKAGNICMTKGIRTNTAKRVGSVPGVEIGDIFFFRMEMCVIGLHAQSMGGIDALHIQGDRGEDTLAVSIVSSGEYDDEAEDGDVIIYTGQGGNFNKKDKHVSDQKLHKGNLALDRSSRTHNEIRVIRGIKDAVTPGAKIYVYDGLYKIQDSWVEKAKGGGGLFKYKLIRVPGQPSAFAVWKSVQKWKAGFPARTGLILADLSSGAESLPVSLVNEVDNVKSPAFFTYFHSLRHPKSFSLMQPSHSCSCSGKKACVPGDLDCSCIRRNEGDFPYIINGVLANRKPLVHECGPTCQCFPNCKNRVSQTGLKHQMEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVIDKARLSQLVQEGDTDEYVFDTTRIYESFKWNYEPKLLEEATTNESSEDYALPHPLIINAKNVGNVARFMNHSCSPNVFWQPVLYEENNQSFLHVAFFALRHIPPMHELTYDYGSDRSNHTEGSSARKGRKKCLCGSSNCRGSFT*