AlfalfaGEDB | MsaG012525

M. sativa ssp. caerulea / MsaG012525

KEGG: -
GO: -
PFAM: PF01657.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012525	XP_013458900.3	37.654	324	197	4	1063	1383	35	356	1.08e-54	215
MsaG012525	XP_013458900.3	76.558	337	17	3	677	1008	20	299	3.44e-146	471
MsaG012525	XP_013458900.3	95.310	661	28	1	1	661	1	658	0.0	1244

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012525	sp\|Q9M0X5\|CRK25_ARATH	42.941	680	349	10	9	661	8	675	2.39e-176	544
MsaG012525	sp\|Q9M0X5\|CRK25_ARATH	31.161	353	215	9	1061	1395	32	374	1.43e-43	173
MsaG012525	sp\|Q9M0X5\|CRK25_ARATH	27.945	365	183	10	666	1008	8	314	3.51e-31	135

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012525	A0A396ILL7	37.654	324	197	4	1063	1383	35	356	5.16e-55	215
MsaG012525	A0A396ILL7	76.558	337	17	3	677	1008	20	299	1.64e-146	471
MsaG012525	A0A396ILL7	95.310	661	28	1	1	661	1	658	0.0	1244

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000705	MsaG012525	0.803157	6.706965e-49	9.743127e-47
MsaG000906	MsaG012525	0.820894	9.459390e-53	2.130245e-50
MsaG001045	MsaG012525	0.823107	2.920660e-53	6.978310e-51
MsaG001270	MsaG012525	0.831802	2.451730e-55	7.474773e-53
MsaG003263	MsaG012525	0.801694	1.338298e-48	1.880070e-46
MsaG003505	MsaG012525	0.803488	5.732284e-49	8.391104e-47
MsaG005226	MsaG012525	0.812872	5.864144e-51	1.074651e-48
MsaG007409	MsaG012525	0.833163	1.132144e-55	3.591255e-53
MsaG009423	MsaG012525	0.803481	5.749947e-49	8.415620e-47
MsaG010083	MsaG012525	0.817631	5.193857e-52	1.073772e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012525	MtrunA17_Chr3g0081011	95.310	661	28	1	1	661	1	658	0.0	1244
MsaG012525	MtrunA17_Chr3g0081011	76.558	337	17	3	677	1008	20	299	3.16e-150	471
MsaG012525	MtrunA17_Chr3g0081011	37.654	324	197	4	1063	1383	35	356	9.94e-59	215
MsaG012525	MtrunA17_Chr3g0081001	87.500	664	78	2	1	661	1	662	0.0	1188
MsaG012525	MtrunA17_Chr3g0081001	69.188	357	44	4	661	1008	4	303	1.05e-144	457
MsaG012525	MtrunA17_Chr3g0081001	38.532	327	194	2	1063	1383	35	360	1.94e-64	232
MsaG012525	MtrunA17_Chr3g0082941	86.948	498	50	3	164	661	1	483	0.0	887
MsaG012525	MtrunA17_Chr3g0082941	73.881	134	31	2	878	1008	1	133	2.10e-54	198
MsaG012525	MtrunA17_Chr3g0082941	36.410	195	114	5	1194	1383	1	190	4.99e-30	125
MsaG012525	MtrunA17_Chr8g0354421	62.215	659	236	6	12	661	28	682	0.0	835

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012525	AT4G05200.1	42.941	680	349	10	9	661	8	675	2.43e-177	544
MsaG012525	AT4G05200.1	31.161	353	215	9	1061	1395	32	374	1.45e-44	173
MsaG012525	AT4G05200.1	27.945	365	183	10	666	1008	8	314	3.57e-32	135
MsaG012525	AT4G05200.2	42.899	683	345	11	9	661	26	693	3.10e-177	545
MsaG012525	AT4G05200.2	31.161	353	215	9	1061	1395	50	392	1.60e-44	174
MsaG012525	AT4G05200.2	27.945	365	183	10	666	1008	26	332	3.47e-32	135
MsaG012525	AT4G23180.1	44.495	654	328	11	25	661	34	669	5.95e-175	538
MsaG012525	AT4G23180.1	31.176	340	200	10	1061	1383	42	364	1.63e-31	133
MsaG012525	AT4G23180.1	41.739	115	65	2	682	795	34	147	9.45e-19	92.8
MsaG012525	AT4G23160.1	42.534	663	341	12	22	661	37	682	3.19e-161	502

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Find 241 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATGGCACAAGGTCA+TGG	0.531860	3:+26322692	MsaT012525.1:intron
AAAAGGCTGTCTACAACATC+TGG	0.443216	3:+26296834	MsaT012525.1:CDS
AAAATTGCTGATGTATTATT+TGG	0.138650	3:-26321201	None:intergenic
AAACTAGGAGCAGGTGGTTT+TGG	0.327588	3:+26296655	MsaT012525.1:CDS
AAATATGGTCAAAGTATATC+AGG	0.371920	3:+26303048	MsaT012525.1:CDS
AAATGCAGGATGTTTAGGAT+TGG	0.509561	3:-26298539	None:intergenic
AAATGCTGTGGGACAAAGAT+TGG	0.502175	3:+26303428	MsaT012525.1:CDS
AAATTAAAGGGATTATTGGG+AGG	0.658977	3:-26296594	None:intergenic
AAATTAGGGAAAGGTGGATT+TGG	0.348281	3:+26323211	MsaT012525.1:CDS
AACAACCCAAAAGTCTCACA+AGG	0.681777	3:-26296917	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	26291485	26325268	26291485	ID=MsaG012525
Chr3	mRNA	26291485	26325268	26291485	ID=MsaT012525.1;Parent=MsaG012525
Chr3	exon	26291485	26291864	26291485	ID=MsaT012525.1.exon1;Parent=MsaT012525.1
Chr3	CDS	26291485	26291864	26291485	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26292029	26292429	26292029	ID=MsaT012525.1.exon2;Parent=MsaT012525.1
Chr3	CDS	26292029	26292429	26292029	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26295991	26296116	26295991	ID=MsaT012525.1.exon3;Parent=MsaT012525.1
Chr3	CDS	26295991	26296116	26295991	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26296521	26296690	26296521	ID=MsaT012525.1.exon4;Parent=MsaT012525.1
Chr3	CDS	26296521	26296690	26296521	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26296801	26297011	26296801	ID=MsaT012525.1.exon5;Parent=MsaT012525.1
Chr3	CDS	26296801	26297011	26296801	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26297696	26297933	26297696	ID=MsaT012525.1.exon6;Parent=MsaT012525.1
Chr3	CDS	26297696	26297933	26297696	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26298047	26298197	26298047	ID=MsaT012525.1.exon7;Parent=MsaT012525.1
Chr3	CDS	26298047	26298197	26298047	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26298352	26298656	26298352	ID=MsaT012525.1.exon8;Parent=MsaT012525.1
Chr3	CDS	26298352	26298656	26298352	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26302614	26303549	26302614	ID=MsaT012525.1.exon9;Parent=MsaT012525.1
Chr3	CDS	26302614	26303549	26302614	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26311627	26311733	26311627	ID=MsaT012525.1.exon10;Parent=MsaT012525.1
Chr3	CDS	26311627	26311733	26311627	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26320809	26321650	26320809	ID=MsaT012525.1.exon11;Parent=MsaT012525.1
Chr3	CDS	26320809	26321650	26320809	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26322697	26322805	26322697	ID=MsaT012525.1.exon12;Parent=MsaT012525.1
Chr3	CDS	26322697	26322805	26322697	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26323074	26323246	26323074	ID=MsaT012525.1.exon13;Parent=MsaT012525.1
Chr3	CDS	26323074	26323246	26323074	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26324648	26324666	26324648	ID=MsaT012525.1.exon14;Parent=MsaT012525.1
Chr3	CDS	26324648	26324666	26324648	ID=cds.MsaT012525.1;Parent=MsaT012525.1
Chr3	exon	26325129	26325268	26325129	ID=MsaT012525.1.exon15;Parent=MsaT012525.1
Chr3	CDS	26325129	26325268	26325129	ID=cds.MsaT012525.1;Parent=MsaT012525.1

Gene Sequence

>MsaT012525.1

ATGGCAAAAACACTCATACTCATTTCCATCATTAGATTTATTAGCATCATCACCCTTTTCACAAAATCAATTGCACAATCACCAAATTATGTAGGTGATGATTGCCACAACTCAACCGAACAATCTCTTACAGCTACATACAAATCTAACCTTAATAAAGTCCTCTCACTTCTTTCCTCTGATGCTATTGTAAGCAAAGGATATAATCACACAAGCATAGGAGAGAACACAGTTGATGCTGTCTATGGTCTCTATGATTGTAGAGGTGATGTCACAGGATCTTTTTGTCAATTTTGTGTCTCTACTGCTGCTTCAGATGTTCTTCAACGCTGTCCTAATAGAGCTTCAGCTGTTATATGGTACAACTTTTGCATTTTCAGGTATTCCAACCATAATTTTTTTGGAAACCTCACAACAAATCCATCATGGCAAAGGCCAGGGTCAAAAAACATCACTAATCCACGAGAACTTGATAAAGCTGAGGATAATATGCAAAGTTTAATAAGTGAAGCTACTTTGGAGACCAATAAGTTGTATGCAATGAGGGAGTTCAATTTGAGTAATAGTCCCATTGAAAAAAGATATGGATTGGTGCAGTGTAGTAGGGACCTTAATGACAAACAATGTAATCAATGTTTGGAGGCTATGTTGGACGAAGTTCCTAAATGCTGTGGGACAAAAATTGGTTGGCAGGTTCTTGCTCCAAGTTGTTTGATAAAGTATGATGATTTTATGTTCTACCAACTTACTTCTGCAACTTCTGCTCCTTTGCCAAATCCAGCCGAGGAAGGAGGTTCAAGTAAATCAAAGACCTTGATCATCACTATTGTCATTGTGTTGGTGGTGGTACTTGCACTCATAAGTTGTTGCATCTTCTTCATATGGAGGCGGAATCGCTCAAATAAAGATGGAATACTATCAGAGACAATTCCTATATCTCATCATGGTCATATTCAAGGAGAGGATTCATATAATGCTGACCTCCCAATAATCCCTTTAATTTGGATTCGACAAAGCACTAATAACTTTTCAGAATTATGTAAACTAGGAGCAGGTGGTTTTGGTCCTGTTTACAAGGGTAATTTAGTAGATGGAACAGAAGTTGCAATCAAAAGGCTGTCTACAACATCTGGTCAAGGTTTAGAGGAGTTCACAAATGAAGTAATCTTTATAGCTAAGTTGCAACATAGAAACCTTGTGAGACTTTTGGGTTGTTGCATTGAAGATAATGAAAAGTTGCTTGTATATGAATACATGCCAAACTCTAGCCTTGACTTTCATCTATTTGATGAAGAAAAAAGAAAACTTCTAGATTGGAAGTTAAGACTGAACATTATCAATGGAATTGCAAAAGGACTCTTGTATCTTCATGAAGACTCTAGACTTAGAGTAATCCATAGAGACCTAAAAGCAAGTAATGTTCTCTTAGATCAAGAGATGAATCCAAAAATATCTGATTTTGGATTGGCAAGGGCATTTGAAAAAGGTCAAAGTCAAGAAAACACAAGAAGAGTTGTGGGCACATACGGTTACATGGCTCCAGAATACGCTATGGAAGGGTTATATTCAGGGAAATCAGATGTTTTCAGCTATGGAGTTCTTTTATTAGAAATAATTTGTGGAAAAAAGAATGGTGGATTCTATCTCGAAGAACATGGTCAAAGTCTTCTTATATATAGTTGGAATCTTTGGTGTGAAGGAAAAAGTTTGGAACTGTTAGATCCAATACTGAAAAATACATACATAAGCAATGAAGTTATGAAATGCATACACATTGGTTTGTTATGTGTACAAGAAGATGCAGTGGATAGACCAACCATGTCCAATGTTGTTGTCATGCTAGCAAGTGACACAATGGCACTTTCCAATCCTAAACATCCTGCATTTTCAGTTGGAAGACAAGTAACTGATGATCAAACAACATCTAAAGTTTCCAAAGATCCTTCTGTTAATGAAGTTACAATATCAAATGTTTTTCCTAGACTCGTACTCATTTCCATCCTTAGATTTCTTAGCTTCATGACCCTTTTCACAAAATCCATTGCACAATCACCAGATTATGTAGGTGATGATTGCCACAACTCAACCGAACAATCTCTTACAGCTACATACAAATCCAACCTTAATAAAGTCCTTTCATTGCTCTCATCTGATGCTATTGTAAGCAAAGGATATAATCACACAAGTATAGGTGACAATACAGTTGATGCTGTCTATGGTCTCTATGATTGTAGAGGTGATGTCACTGCATCATTTTGTCAATTTTGTGTCTCTACTGCTACTTCAGATGTTCTTCAACGCTGTCCTAATAGAGCTTCAGCGGTAATATGGTACAACTTTTGCATTTTCAGGTACTCATCGATACGAATCCAACAACATCTTATATGGTATTATTTATCTTTGTATATTAATGGAAAAATATGGTCAAAGTATATCAGGTCAATAGTGCATATTGTCAAATGGTCATCTAATATGAGACAGAGGGAGTATAACTTAAGATTTGTAAATATGTGTTTGAGTAGGTATTCAAACCATAATTTCTTTGGGAACCTCACAACAAGTCCATCATGGCAAATGCCGGGGTCAAAAAACATCACTAATCCACAAGAACTTGATAAAGCTGAAGATAATATGCAAAGTTTAATAAGTGAAGCTACTTTGGAGACCAATAAGTTGTATGCAATGGGGGAGTTCAATTTGAGCAGTGAAAAAAGATATGGATTGGTGCAGTGTAATAGGGACCTTAATGACAAACAATGTAATCAATGTTTGGAGGCAATGTTAGACAAAGTTCCTAAATGCTGTGGGACAAAGATTGGTTGGCAGGTTCATGCTCCAAGTTGTTTGATGAAATATGATGATTTTATGTTCTACCAACTTACTTCTGCAACTTCTGCTCCTTTGCCAAATCCAGGTTTTAAATCAAAGACCTTGATCATCACTATTGTCATTGTGTTGGTGGTGGTACTTGCTCTCATAAGTTGTTGCATCTTCTTCATATGGAGGCGGAATCACTCAAATAAAGGCACAAACTTCACATATAAACTAATGATCAGAAACTGTAATTGTAGCAGCAGAAGAATGCTTCATCTATGGTTATTTACCATCAAATTGATATACCTTTTCTATGTTGGTGTAGGCCAAGACAATAGCAATTCACAAGAACTACTTGAATATAGATATGCTTGTTTGGACCAATCTTCTACTCCTCCCTCTACCACATACCAAACCAACCTCAACAATTTAATCTCTTCACTATCATCAGATTCTGCTTCCAGCAATGGTTTTGGAAATAGTACTTCAGGTAGTAATCAAAGCAACATGGTTTACGGACAATACCTTTGTCGTGGCGATGTTAATACAAGTCTTTGTCATTCATGTGTCCAAAACTCTAGCAGATTGCTCAAACAACACTGTCCAAATAATACATCAGCAATTTTGTGGTACCCTTTTTGTCTTCTAAGGTACTCAAATCAGAATTTCTTTGGTAACCTTACTATAAGACCAAGGATTCCTATGTTTGATGTAGCACAAAATTTAACTAGTGCTGGTGAATTTGATAGTGATGCTAGGGTTTTGATGAATGGTTTGATACAAATGGGATCACAAACACCTTTAATGTTTGGAACACATATGTTTAACATAAATGGTACTCAAAGAAGGTATGGTTGGGTGCAGTGTAGCAGAGATATTACTAGTGAGGAATGCAGAACTTGCTTGAGCAATATGCTTGAGGATGTAGAAAATTGTTGTATGGAGAAGAAAGTGTGGAGAATCTTTTCTCCAAGTTGTATTGTCATGTATGAAACTCAGCCATTCTTTGTGAATGGTACAGTTTCTGAAGCTCCTGTGCCTCAACAAGGTATGGATGGCACAAGGTCATGGATAATAATAATCATTGTTGTAATTGGAGCAGTAGTAGCAGCTCTAGTGGTTTTCAGCACATACTATTTCTGGTGCTTGAAACATCGAAAAAGGAGAAATGTTATGCAAAGCCATAGTCCACTATTTTCTCAAGATCAGACTGACATTGAGGAGACTGGAAATACTGACCTACCTATGATGCCTTTGAGTACTATTCTAAAAAGTACTAATAATTTTTCTGATGAATATAAATTAGGGAAAGGTGGATTTGGAACTGTCTACAAGGAAAGCAAAACAATGACATGTGACACGGTGACTCTTCCAAGCCCTACACGCCCTGCATTTTCTGTTGGTAGAGCTAGAGCTATCGTTGACCGAGAATCTTCGTCAAACACTTCTATCTCTGCCAATGAAGTAACCTTGTCTGAATTGACGCCTAGATGA

Protein sequence

>MsaT012525.1

MAKTLILISIIRFISIITLFTKSIAQSPNYVGDDCHNSTEQSLTATYKSNLNKVLSLLSSDAIVSKGYNHTSIGENTVDAVYGLYDCRGDVTGSFCQFCVSTAASDVLQRCPNRASAVIWYNFCIFRYSNHNFFGNLTTNPSWQRPGSKNITNPRELDKAEDNMQSLISEATLETNKLYAMREFNLSNSPIEKRYGLVQCSRDLNDKQCNQCLEAMLDEVPKCCGTKIGWQVLAPSCLIKYDDFMFYQLTSATSAPLPNPAEEGGSSKSKTLIITIVIVLVVVLALISCCIFFIWRRNRSNKDGILSETIPISHHGHIQGEDSYNADLPIIPLIWIRQSTNNFSELCKLGAGGFGPVYKGNLVDGTEVAIKRLSTTSGQGLEEFTNEVIFIAKLQHRNLVRLLGCCIEDNEKLLVYEYMPNSSLDFHLFDEEKRKLLDWKLRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNVLLDQEMNPKISDFGLARAFEKGQSQENTRRVVGTYGYMAPEYAMEGLYSGKSDVFSYGVLLLEIICGKKNGGFYLEEHGQSLLIYSWNLWCEGKSLELLDPILKNTYISNEVMKCIHIGLLCVQEDAVDRPTMSNVVVMLASDTMALSNPKHPAFSVGRQVTDDQTTSKVSKDPSVNEVTISNVFPRLVLISILRFLSFMTLFTKSIAQSPDYVGDDCHNSTEQSLTATYKSNLNKVLSLLSSDAIVSKGYNHTSIGDNTVDAVYGLYDCRGDVTASFCQFCVSTATSDVLQRCPNRASAVIWYNFCIFRYSSIRIQQHLIWYYLSLYINGKIWSKYIRSIVHIVKWSSNMRQREYNLRFVNMCLSRYSNHNFFGNLTTSPSWQMPGSKNITNPQELDKAEDNMQSLISEATLETNKLYAMGEFNLSSEKRYGLVQCNRDLNDKQCNQCLEAMLDKVPKCCGTKIGWQVHAPSCLMKYDDFMFYQLTSATSAPLPNPGFKSKTLIITIVIVLVVVLALISCCIFFIWRRNHSNKGTNFTYKLMIRNCNCSSRRMLHLWLFTIKLIYLFYVGVGQDNSNSQELLEYRYACLDQSSTPPSTTYQTNLNNLISSLSSDSASSNGFGNSTSGSNQSNMVYGQYLCRGDVNTSLCHSCVQNSSRLLKQHCPNNTSAILWYPFCLLRYSNQNFFGNLTIRPRIPMFDVAQNLTSAGEFDSDARVLMNGLIQMGSQTPLMFGTHMFNINGTQRRYGWVQCSRDITSEECRTCLSNMLEDVENCCMEKKVWRIFSPSCIVMYETQPFFVNGTVSEAPVPQQGMDGTRSWIIIIIVVIGAVVAALVVFSTYYFWCLKHRKRRNVMQSHSPLFSQDQTDIEETGNTDLPMMPLSTILKSTNNFSDEYKLGKGGFGTVYKESKTMTCDTVTLPSPTRPAFSVGRARAIVDRESSSNTSISANEVTLSELTPR*