AlfalfaGEDB | MsaG012723

M. sativa ssp. caerulea / MsaG012723

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012723	XP_003599090.2	91.484	411	14	2	1	395	1	406	0.0	768

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012723	sp\|Q66GR3\|BH130_ARATH	36.031	383	176	13	34	389	17	357	4.81e-46	164

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012723	G7IWI2	91.484	411	14	2	1	395	1	406	0.0	768

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG012723	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG012723	0.840438	1.608593e-57	6.366500e-55
MsaG000412	MsaG012723	0.803790	4.965397e-49	7.319471e-47
MsaG000459	MsaG012723	0.850485	3.138616e-60	1.729634e-57
MsaG000717	MsaG012723	0.867269	3.121026e-65	3.231055e-62
MsaG000847	MsaG012723	0.819472	1.995668e-52	4.328359e-50
MsaG001026	MsaG012723	0.871294	1.557311e-66	1.906533e-63
MsaG001468	MsaG012723	0.814765	2.254661e-51	4.332711e-49
MsaG001551	MsaG012723	0.898802	8.490625e-77	4.048876e-73
MsaG001730	MsaG012723	0.845483	7.410475e-59	3.450000e-56
MsaG001939	MsaG012723	0.883347	1.036583e-70	2.191473e-67

Showing 1 to 10 of 369 entries

Previous1 2 3 4 5…37Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012723	MtrunA17_Chr3g0087771	91.484	411	14	2	1	395	1	406	0.0	768
MsaG012723	MtrunA17_Chr8g0351881	48.889	405	146	10	10	385	18	390	4.21e-99	300
MsaG012723	MtrunA17_Chr1g0174271	35.610	410	184	16	14	383	1	370	2.27e-49	171
MsaG012723	MtrunA17_Chr2g0329041	36.580	421	204	18	20	389	1	409	7.22e-49	170
MsaG012723	MtrunA17_Chr4g0032951	33.102	432	195	15	30	390	25	433	4.66e-46	163
MsaG012723	MtrunA17_Chr7g0258181	39.583	240	107	5	166	383	92	315	6.01e-42	149
MsaG012723	MtrunA17_Chr4g0014771	68.235	85	27	0	303	387	110	194	3.04e-34	125
MsaG012723	MtrunA17_Chr1g0213791	60.577	104	40	1	281	384	236	338	2.97e-31	121
MsaG012723	MtrunA17_Chr4g0074161	54.545	66	29	1	310	375	205	269	4.82e-15	76.3
MsaG012723	MtrunA17_Chr3g0131771	53.846	65	30	0	311	375	147	211	3.43e-14	73.2

Showing 1 to 10 of 19 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012723	AT2G42280.1	36.031	383	176	13	34	389	17	357	4.89e-47	164
MsaG012723	AT1G51140.1	32.741	394	212	12	19	385	11	378	2.30e-44	158
MsaG012723	AT2G42280.3	35.150	367	169	13	34	373	17	341	3.58e-40	146
MsaG012723	AT2G43140.1	50.714	140	56	3	259	389	77	212	2.05e-38	137
MsaG012723	AT1G05805.1	34.465	383	182	17	32	388	21	360	9.70e-38	140
MsaG012723	AT2G43140.2	50.714	140	56	3	259	389	174	309	1.69e-37	138
MsaG012723	AT1G35460.1	67.857	84	27	0	306	389	176	259	1.27e-33	126
MsaG012723	AT4G09180.1	53.782	119	51	2	273	389	146	262	6.98e-32	122
MsaG012723	AT1G35460.2	72.000	50	14	0	303	352	173	222	5.64e-17	80.1
MsaG012723	AT2G42280.2	29.907	321	158	12	34	328	17	296	1.67e-16	80.1

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Find 59 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCTGGACTACTAATG+AGG	0.563972	3:-31650580	MsaT012723.1:CDS
AAACCTGTGAAGCAAGAAAT+AGG	0.413405	3:-31650359	MsaT012723.1:CDS
AAAGCCAATGGCATCTCAAA+TGG	0.469024	3:-31649318	MsaT012723.1:CDS
AAAGGATTAAATCAGCTACA+AGG	0.618131	3:+31648214	None:intergenic
AACAAGCACAGCAGATATGT+TGG	0.521420	3:-31648454	MsaT012723.1:CDS
AAGTTGATATCATCCAACAA+TGG	0.670047	3:-31650422	MsaT012723.1:CDS
AATGGTAATTATTCTTATGG+TGG	0.553621	3:-31650317	MsaT012723.1:CDS
ACAAACCTAGTAAATGAAAA+TGG	0.344072	3:-31649195	MsaT012723.1:CDS
ACCCTCTCTGCAATGCTTCT+TGG	0.180344	3:+31648898	None:intergenic
ACTAGGAAGACTCAGATGAC+TGG	0.616049	3:+31649014	None:intergenic

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	31648225	31650687	31648225	ID=MsaG012723
Chr3	mRNA	31648225	31650687	31648225	ID=MsaT012723.1;Parent=MsaG012723
Chr3	exon	31648225	31648296	31648225	ID=MsaT012723.1.exon6;Parent=MsaT012723.1
Chr3	CDS	31648225	31648296	31648225	ID=cds.MsaT012723.1;Parent=MsaT012723.1
Chr3	exon	31648410	31648478	31648410	ID=MsaT012723.1.exon5;Parent=MsaT012723.1
Chr3	CDS	31648410	31648478	31648410	ID=cds.MsaT012723.1;Parent=MsaT012723.1
Chr3	exon	31648733	31648798	31648733	ID=MsaT012723.1.exon4;Parent=MsaT012723.1
Chr3	CDS	31648733	31648798	31648733	ID=cds.MsaT012723.1;Parent=MsaT012723.1
Chr3	exon	31648900	31649069	31648900	ID=MsaT012723.1.exon3;Parent=MsaT012723.1
Chr3	CDS	31648900	31649069	31648900	ID=cds.MsaT012723.1;Parent=MsaT012723.1
Chr3	exon	31649118	31649378	31649118	ID=MsaT012723.1.exon2;Parent=MsaT012723.1
Chr3	CDS	31649118	31649378	31649118	ID=cds.MsaT012723.1;Parent=MsaT012723.1
Chr3	exon	31650138	31650687	31650138	ID=MsaT012723.1.exon1;Parent=MsaT012723.1
Chr3	CDS	31650138	31650687	31650138	ID=cds.MsaT012723.1;Parent=MsaT012723.1

Gene Sequence

>MsaT012723.1

ATGGGTGCTATGTATGAAGAGCTAAGAAGAAACCAAGAAATGGATTCTTCAAGTATTATTCATTCAAAACAACATTATCAACAACAAAATTCTGGACTACTAATGAGGTATAATTCCACTCCAACCTCGTTGTTTACAAACCTTATCGACAACAACGCTCAAAACTTTATCAACAACGAAGAATCGTTTACAAACGAGAGTTATATTCCATCAACAAGTTCAGAAATGGATACCATGTTATCCAAGTTGATATCATCCAACAATGGATGGAACAATTCTGAAGAAAATTTGCAAGAGTTTGATGTGAAACCTGTGAAGCAAGAAATAGGTGAATCTGTTCCTCAACAGAATGGTAATTATTCTTATGGTGGATCTGAGGTGATTTACCAAGGCTTTTCAAATGGTTCTGGTAATGGATTTTATGGCTCTTTTGGTGGAGTAAACACTATGGAGTCAGATGATTCCAATCAATCTAAAATTGGTGTTAGGAATTGCTCCAATCTTATTAGGCAAAAGAGTTCACCTGCTGAGTTTTTCTCTAATGAAAATGGTCTTGCAACATTGACATTGAGAGAGGTAGAAAGCTTTAAAGCCAATGGCATCTCAAATGGTACACTTAACTTCTCATCTAGGCCATCTACTAGCTTGAAAAGGATGCCACAAATAGCTGAAAATGGAATTCAAAGCTTAGAACCAAATTGTGACCAAACTACAAACCTAGTAAATGAAAATGGTAGCTCCAAAAGTCACATACCTAGCTTCACCAATGAATTTTGGGACAATTCTGCATTCAATGCACACAAAACAGAGAAAGCAGATTTTGGCTATCAAAATCTTGGTTTGACCAGTCATCTGAGTCTTCCTAGTTCTTCTACTAAGATGACATCTATGGAGAATTTTCTTCAAATTCAAGGTTCTGTTCCTTGTAAAATTCGAGCGAAAAGAGGGTTTGCAACTCATCCAAGAAGCATTGCAGAGAGGGTCAGAAGAACCAGAATTAGTGACAGAATCAAGAAACTGCAAGGTCTTTTCCCAAAATCAGATAAGCAAACAAGCACAGCAGATATGTTGGATTTGGCAGTTGAGTACATTAAAGACCTACAAGAACAAGTTCAGATACTCACAGATTGTAAGGAAAAATGCAAATGTGCAAGTCATGAGAAGAAACACTGTGAACCTTGTAGCTGA

Protein sequence

>MsaT012723.1

MGAMYEELRRNQEMDSSSIIHSKQHYQQQNSGLLMRYNSTPTSLFTNLIDNNAQNFINNEESFTNESYIPSTSSEMDTMLSKLISSNNGWNNSEENLQEFDVKPVKQEIGESVPQQNGNYSYGGSEVIYQGFSNGSGNGFYGSFGGVNTMESDDSNQSKIGVRNCSNLIRQKSSPAEFFSNENGLATLTLREVESFKANGISNGTLNFSSRPSTSLKRMPQIAENGIQSLEPNCDQTTNLVNENGSSKSHIPSFTNEFWDNSAFNAHKTEKADFGYQNLGLTSHLSLPSSSTKMTSMENFLQIQGSVPCKIRAKRGFATHPRSIAERVRRTRISDRIKKLQGLFPKSDKQTSTADMLDLAVEYIKDLQEQVQILTDCKEKCKCASHEKKHCEPCS*