AlfalfaGEDB | MsaG012780

M. sativa ssp. caerulea / MsaG012780

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF12796.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012780	XP_003599158.2	97.548	734	13	4	1	732	1	731	0.0	1459

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012780	sp\|P93755\|C3H30_ARATH	59.157	759	235	24	1	731	1	712	0.0	771

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012780	tr\|G7IZG5\|G7IZG5_MEDTR	97.548	734	13	4	1	732	1	731	0.0	1459

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TFs/TRs:

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Gene ID	Type	Classification
MsaG012780	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012780	MtrunA17_Chr3g0088521	97.548	734	13	4	1	732	1	731	0.0	1459
MsaG012780	MtrunA17_Chr7g0257831	64.206	718	218	16	33	731	33	730	0.0	833
MsaG012780	MtrunA17_Chr1g0171151	57.997	619	226	12	29	639	13	605	0.0	635
MsaG012780	MtrunA17_Chr3g0092171	61.569	497	98	5	1	497	52	455	0.0	569
MsaG012780	MtrunA17_Chr3g0092171	52.174	92	42	2	591	682	416	505	2.43e-18	89.0
MsaG012780	MtrunA17_Chr3g0092221	62.654	407	88	9	95	497	12	358	4.55e-153	450
MsaG012780	MtrunA17_Chr5g0437251	40.361	721	324	23	45	729	28	678	6.77e-145	439
MsaG012780	MtrunA17_Chr5g0430211	39.208	732	333	19	45	729	33	699	2.82e-141	431
MsaG012780	MtrunA17_Chr1g0187591	38.268	635	277	17	44	668	30	559	5.29e-121	377
MsaG012780	MtrunA17_Chr3g0113651	34.342	661	244	17	45	691	8	492	2.46e-104	329

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012780	AT2G41900.1	59.157	759	235	24	1	731	1	712	0.0	771
MsaG012780	AT5G12850.1	52.587	715	269	23	41	729	36	706	0.0	667
MsaG012780	AT5G58620.1	41.515	660	283	18	44	685	11	585	7.21e-139	422
MsaG012780	AT2G40140.2	37.917	720	293	22	26	729	10	591	1.17e-124	385
MsaG012780	AT2G40140.1	37.917	720	293	22	26	729	10	591	1.17e-124	385
MsaG012780	AT3G55980.1	45.540	426	186	6	47	471	30	410	3.75e-114	357
MsaG012780	AT3G55980.2	45.540	426	186	6	47	471	97	477	3.65e-113	356
MsaG012780	AT2G19810.1	68.033	122	37	1	251	370	61	182	2.33e-55	194
MsaG012780	AT4G29190.1	53.939	165	70	1	255	413	68	232	1.03e-54	192
MsaG012780	AT2G25900.2	69.725	109	33	0	262	370	86	194	1.12e-54	191

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Find 188 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGGCTTGCAGACGTT+CGG	0.457342	3:+33159429	MsaT012780.1:CDS
AAAATACAGAAGCCGCGGCA+GGG	0.617946	3:-33160053	None:intergenic
AAAGAATCCCAACCCTCAAG+TGG	0.585936	3:+33160590	MsaT012780.1:CDS
AAAGAGAAGCTTGCAGGTTC+CGG	0.358491	3:+33160549	MsaT012780.1:CDS
AAATGAAGAGCTGGCACATT+GGG	0.453972	3:-33159775	None:intergenic
AACAATCCTGTCTCAGCTGT+TGG	0.394825	3:+33160345	MsaT012780.1:CDS
AAGACAGCAGATTTGTGTGT+TGG	0.520972	3:-33160078	None:intergenic
AAGAGAGACCATACTGAGCC+TGG	0.528223	3:-33160188	None:intergenic
AAGGATGTCGCCAAGAAGTA+TGG	0.366617	3:+33160218	MsaT012780.1:CDS
AAGGCTCTGCAAAGACGGTA+TGG	0.467673	3:+33159513	MsaT012780.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	33158482	33160680	33158482	ID=MsaG012780
Chr3	mRNA	33158482	33160680	33158482	ID=MsaT012780.1;Parent=MsaG012780
Chr3	exon	33158482	33160680	33158482	ID=MsaT012780.1.exon1;Parent=MsaT012780.1
Chr3	CDS	33158482	33160680	33158482	ID=cds.MsaT012780.1;Parent=MsaT012780.1

Gene Sequence

>MsaT012780.1

ATGTGCGGTGGACCTGACGAATCAAAATCACTTTCAACTTCATCATCTTCCTCTTCATCCGCGGCTGAAGGTTCAACTTCAAATACTGTCAAAGACATGAAAAATCTAACTGTTCGTACCGATGATTCTTTTTCCAGCTTACTCGAACATGCTTCCAACAATGATTTTGAAGATTTCAAGGTAGCTCTAGATAGTGATGCTTCACTTATTAATGAAGTTGGCTTCTGGTATGTCCGTCAAAAGGGATCTAACCAAATTGTTCTTGAGCACCGAACTCCTTTAATGGTGGCTGCTTCCTATGGGAGTATTGATATCCTAAAGCTTATACTCTCGTATCCTGAGGCTGATGTTAATTTCTCCTGTGGAACTGATAAAAGCACTGCTCTTCACTGTGCTGCCTCAAGTGGTTCGGTTAATGCTGTTGACGCTATAAAATTGCTTTTATCAGCTGGTGCTGATATCAATTCGGTGGATGCTAATGGGAAACGCCCTGTCGATGTTATTGTTGTTCCTATTGTTGTTCCCCATAAGCTCGAAGGCGTGAAAACAATTCTTGAAGAACTTCTCTCTGACAGTGCTTCTGAAGGATCTGTTGATGATTGCTCTCTTCCAATGTCTCTTATTTCATCGAGTCCTGGTTCAACTGCTCCTTTATCATCTGCTGAAAATGGGTCTCCATCCTCTCCTGTGGCTCCAAAATTTACCGACTCAGCTGTTAATTCTACATCAGAGAAGAAAGAGTATCCAGTTGACCCATCTCTTCCTGACATAAAAAACAGCATGTATGCCACAGATGAATTCCGCATGTATTCATTCAAGGTTCGTCCTTGTTCTCGTGCATACTCTCATGATTGGACAGAGTGTCCTTTTGTGCATCCTGGGGAGAATGCTCGAAGGAGAGACCCTAGAAAGTTTCACTACAGCTGTGTGCCATGCCCTGATTTTAGAAAAGGGGCTTGCAGACGTTCGGATATGTGTGAATATGCTCATGGAGTATTCGAGTGCTGGCTACACCCAGCTCAGTATCGGACAAGGCTCTGCAAAGACGGTATGGGTTGTAACCGAAGGGTGTGCTTTTTCGCTCACTCACCTGAAGAGCTGCGTCCGCTGTATGTGTCCACTGGATCTGCTGTTCCTTCACCCCGATCAGCTGCTTCTACTGCTAATGTCATGGACATGGCTGCTGCTATGAGCCTTTTCCCTGGTTCACCATCATCAATCTCTTTGATGTCTCAATCACCCTTTGCACAGCCTCTATCCCCATCTGCAAATGGCAATAATGCTTGGCCACAGCCCAATGTGCCAGCTCTTCATTTACCAGGAAGCATTAATCAAACTAGTCGTTTGAGATCTTCTCTCAGTGCCCGTGATATGCCGCCACATGATGACTTCAACAATATGTTGCAAGACTTTGATGGGCAGCAGCAGATTCTGAATGACTTGAGCTGTTTCTCACAGCCCCGTCCTGGTGCTATTTCAGTCGGTCGATCTGGCCGCTCTAAAACACTAACCCCATCAAATCTTGATGATCTATTTTGTGCTGAGATTTCTTCATCCCCTCGGTATTCTGACCCTGCCGCGGCTTCTGTATTTTCCCCAACACACAAATCTGCTGTCTTCAACCAGTTTCAACAGCTCCAAAGCTCCTTATCGCCCATCAACACAAATGTCATGTCTCCTACAAACGTAGAGCATCCCCTATTCCACCAGGCTCAGTATGGTCTCTCTTCTCCTGGAAGGATGTCGCCAAGAAGTATGGAAGCCCTCTCTCCAATGAGTTCTCGGTTGTCAGCTTTTGCTCAGCGTGAGAAACAGCAGCAGCAGCAACAGCTGCGTAGCCTTAGCTCAAGAGAACTCGGTGCTAACAATCCTGTCTCAGCTGTTGGGTCCCCTGTTAACTCCTGGTCTAAGTGGGGATCATCCCCTATTGGAAAAGCTGATTGGTCTGTAAATCCAAATGACTTTGGTCAAACACAGAGATCCACCTCTTTTGAGCATGGAAACAATGGAGAAGAGCCTGATGTAGGTTGGGTCCATTCCCTTGTCAAGGATCCCACACCTGAGAAGAAAGAGAAGCTTGCAGGTTCCGGCCCGATTCCATCTGCTGAAAAGAATCCCAACCCTCAAGTGGACGGCATTGATCACTCTGTTTTGGGAGCTTGGCTTGAGCAACTGCAGCTGGATCAACTTGTAGTCTAG

Protein sequence

>MsaT012780.1

MCGGPDESKSLSTSSSSSSSAAEGSTSNTVKDMKNLTVRTDDSFSSLLEHASNNDFEDFKVALDSDASLINEVGFWYVRQKGSNQIVLEHRTPLMVAASYGSIDILKLILSYPEADVNFSCGTDKSTALHCAASSGSVNAVDAIKLLLSAGADINSVDANGKRPVDVIVVPIVVPHKLEGVKTILEELLSDSASEGSVDDCSLPMSLISSSPGSTAPLSSAENGSPSSPVAPKFTDSAVNSTSEKKEYPVDPSLPDIKNSMYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRSDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHSPEELRPLYVSTGSAVPSPRSAASTANVMDMAAAMSLFPGSPSSISLMSQSPFAQPLSPSANGNNAWPQPNVPALHLPGSINQTSRLRSSLSARDMPPHDDFNNMLQDFDGQQQILNDLSCFSQPRPGAISVGRSGRSKTLTPSNLDDLFCAEISSSPRYSDPAAASVFSPTHKSAVFNQFQQLQSSLSPINTNVMSPTNVEHPLFHQAQYGLSSPGRMSPRSMEALSPMSSRLSAFAQREKQQQQQQLRSLSSRELGANNPVSAVGSPVNSWSKWGSSPIGKADWSVNPNDFGQTQRSTSFEHGNNGEEPDVGWVHSLVKDPTPEKKEKLAGSGPIPSAEKNPNPQVDGIDHSVLGAWLEQLQLDQLVV*