AlfalfaGEDB | MsaG012785

M. sativa ssp. caerulea / MsaG012785

KEGG: K09422
GO: GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0009719 GO:0009725 GO:0009751 GO:0009832 GO:0009834 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042493 GO:0042546 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071554 GO:0071669 GO:0071840 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901348 GO:1901363 GO:1901700 GO:1902680 GO:1903338 GO:1903340 GO:1903506 GO:1903508 GO:2000112 GO:2000652 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012785	XP_013459180.1	97.085	343	6	3	1	339	1	343	0.0	676

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012785	sp\|Q9C6U1\|MYB83_ARATH	45.179	363	154	9	1	339	1	342	1.03e-79	249

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012785	tr\|A0A072UVZ0\|A0A072UVZ0_MEDTR	97.085	343	6	3	1	339	1	343	0.0	676

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TFs/TRs:

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Gene ID	Type	Classification
MsaG012785	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012785	MtrunA17_Chr3g0088461	97.085	343	6	3	1	339	1	343	0.0	676
MsaG012785	MtrunA17_Chr4g0032401	44.687	367	134	12	3	337	1	330	1.91e-84	258
MsaG012785	MtrunA17_Chr2g0328771	46.746	338	150	9	3	332	1	316	1.03e-76	238
MsaG012785	MtrunA17_Chr1g0193371	78.899	109	23	0	19	127	9	117	4.95e-59	194
MsaG012785	MtrunA17_Chr1g0193801	76.147	109	26	0	19	127	9	117	6.78e-58	192
MsaG012785	MtrunA17_Chr1g0211161	59.146	164	63	3	19	180	10	171	1.92e-57	186
MsaG012785	MtrunA17_Chr2g0330041	73.394	109	29	0	18	126	8	116	2.65e-57	191
MsaG012785	MtrunA17_Chr8g0342541	72.477	109	30	0	18	126	8	116	3.54e-57	189
MsaG012785	MtrunA17_Chr3g0117091	77.778	108	24	0	19	126	9	116	4.17e-57	188
MsaG012785	MtrunA17_Chr7g0270891	76.147	109	26	0	19	127	9	117	4.63e-57	189

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012785	AT3G08500.1	45.179	363	154	9	1	339	1	342	1.05e-80	249
MsaG012785	AT5G12870.1	78.400	125	25	1	3	127	1	123	1.37e-69	219
MsaG012785	AT4G01680.3	77.982	109	24	0	19	127	9	117	2.57e-59	191
MsaG012785	AT4G01680.1	77.982	109	24	0	19	127	9	117	1.33e-58	192
MsaG012785	AT5G26660.1	53.226	186	71	2	19	204	9	178	1.65e-58	192
MsaG012785	AT1G09540.1	76.147	109	26	0	19	127	9	117	4.65e-58	192
MsaG012785	AT3G13890.2	74.312	109	28	0	18	126	8	116	4.73e-58	191
MsaG012785	AT1G57560.2	75.000	108	27	0	19	126	9	116	4.26e-57	186
MsaG012785	AT1G57560.1	75.000	108	27	0	19	126	9	116	4.31e-57	188
MsaG012785	AT1G63910.1	68.182	110	35	0	18	127	8	117	2.27e-55	185

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Find 81 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTAAGAATGGGAGAA+TGG	0.437647	3:-33237079	MsaT012785.1:CDS
AAAATTCTTTATTTCATTGT+CGG	0.387116	3:+33237688	None:intergenic
AAACCCAAACATGTCCTCAT+TGG	0.453573	3:+33237121	None:intergenic
AAACTTAAGAATGGGAGAAT+GGG	0.456783	3:-33237078	MsaT012785.1:CDS
AAATTGGTCAGGTAAAACCA+TGG	0.714456	3:+33237451	None:intergenic
AACAAGAGCAAGCTAAGGAA+AGG	0.537747	3:-33239559	MsaT012785.1:CDS
AACCATGGTATGCATGTGCA+TGG	0.586474	3:+33237466	None:intergenic
AACTCCAATGAGGACATGTT+TGG	0.328489	3:-33237125	MsaT012785.1:CDS
AAGAATGGGAGAATGGGATT+TGG	0.378844	3:-33237072	MsaT012785.1:CDS
AATAGTTGTTTAACACAAGT+TGG	0.469190	3:-33237362	MsaT012785.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	33237019	33239632	33237019	ID=MsaG012785
Chr3	mRNA	33237019	33239632	33237019	ID=MsaT012785.1;Parent=MsaG012785
Chr3	exon	33237019	33237745	33237019	ID=MsaT012785.1.exon2;Parent=MsaT012785.1
Chr3	CDS	33237019	33237745	33237019	ID=cds.MsaT012785.1;Parent=MsaT012785.1
Chr3	exon	33239340	33239632	33239340	ID=MsaT012785.1.exon1;Parent=MsaT012785.1
Chr3	CDS	33239340	33239632	33239340	ID=cds.MsaT012785.1;Parent=MsaT012785.1

Gene Sequence

>MsaT012785.1

ATGCAAATGAGGAAACCTGATTTGATCATGGGAAAAGACAACAACAACATTAACAAGAGCAAGCTAAGGAAAGGGTTATGGTCACCTGAGGAAGATGAGAAGTTGGTAAGATACATGATAACTAAAGGACAAGGTTGTTGGAGTGACATTGCTAGGAATGCTGGTCTTCAAAGGTGTGGTAAAAGTTGCCGTCTTCGTTGGATTAATTACTTGAGACCTGATCTTAAGCGCGGCGCATTTTCGCCACAAGAGGAAGAACTCATCATTCATTTCCACTCCATTCTTGGCAACAGATGGTCCCAAATTGCAGCACGTCTACCTGGTCGTACCGACAATGAAATAAAGAATTTTTGGAATTCCACACTGAAGAAAAGATTGAAAACCAACAACAACAACTCTACTCCATCTCCAAACAACAGTGACACTTCGGATCAACCAATAGATAATGTTTTTGATGTGAAAAATAACATGATCATGCCAATTAATGAACAAGAACTAATGACATTATGCATGGATTCCTCATCATCAACTTCATCATCATCCATGCAATCCATGCACATGCATACCATGGTTTTACCTGACCAATTTGATCCATTTTCCTTGTTGTCTAACAACCGTTATGACATGACAAGTTTTCATGCTCATGACTTGCCAAATAGTTGTTTAACACAAGTTGGCAATATGGTTGATGATATTGGGCTTCATAGTGATGATCATTATGGGATTTTGGAGGCTAATAAAATGGGGTTATTAGAAAATGATTTTGAACTTCCTCCACTAGAAAGTAGAATTAGCATTGAAGATAAGAGTGCCCTAATTGGTGATCATAATGTGAAAAGCCATAACAACCACTTCAATAATAGTTGCTTCAATAACACTAATCACATTCAAAACTCCAATGAGGACATGTTTGGGTTTGGAAGTCATGGGCAAGGAGAAAACTTAAGAATGGGAGAATGGGATTTGGAGGGTTTGATGCAAGACATATCCTATTTTCCTCCTCTTGATTTCCAAGTTTAA

Protein sequence

>MsaT012785.1

MQMRKPDLIMGKDNNNINKSKLRKGLWSPEEDEKLVRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRLKTNNNNSTPSPNNSDTSDQPIDNVFDVKNNMIMPINEQELMTLCMDSSSSTSSSSMQSMHMHTMVLPDQFDPFSLLSNNRYDMTSFHAHDLPNSCLTQVGNMVDDIGLHSDDHYGILEANKMGLLENDFELPPLESRISIEDKSALIGDHNVKSHNNHFNNSCFNNTNHIQNSNEDMFGFGSHGQGENLRMGEWDLEGLMQDISYFPPLDFQV*