AlfalfaGEDB | MsaG012871

M. sativa ssp. caerulea / MsaG012871

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012871	XP_003592558.1	95.513	156	7	0	1	156	1	156	6.70e-106	312

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012871	sp\|Q9FKK2\|AGL62_ARATH	58.065	155	62	2	5	156	3	157	7.48e-53	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012871	tr\|G7IAT8\|G7IAT8_MEDTR	95.513	156	7	0	1	156	1	156	3.20e-106	312

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TFs/TRs:

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Gene ID	Type	Classification
MsaG012871	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012871	MtrunA17_Chr1g0208561	95.513	156	7	1	156	1	156	6.16e-110	312
MsaG012871	MtrunA17_Chr3g0089141	94.872	156	8	1	156	1	156	1.08e-108	308
MsaG012871	MtrunA17_Chr2g0325971	86.538	156	21	1	156	1	156	1.04e-98	283
MsaG012871	MtrunA17_Chr1g0208581	83.974	156	25	1	156	1	156	5.52e-96	276
MsaG012871	MtrunA17_Chr1g0206721	81.290	155	29	1	155	1	155	3.89e-91	265
MsaG012871	MtrunA17_Chr8g0355091	80.128	156	31	1	156	1	156	2.10e-88	258
MsaG012871	MtrunA17_Chr1g0206701	78.205	156	34	1	156	1	156	2.95e-88	257
MsaG012871	MtrunA17_Chr3g0099421	76.282	156	37	1	156	26	181	1.95e-86	253
MsaG012871	MtrunA17_Chr1g0149391	75.949	158	38	1	158	1	158	2.60e-86	252
MsaG012871	MtrunA17_Chr2g0292791	76.923	156	36	1	156	1	156	5.00e-86	251

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012871	AT5G60440.1	58.065	155	62	2	5	156	3	157	7.60e-54	172
MsaG012871	AT2G24840.1	48.701	154	68	4	9	156	63	211	3.88e-39	134
MsaG012871	AT4G36590.1	46.914	162	76	4	5	158	3	162	3.21e-37	128
MsaG012871	AT1G01530.1	44.805	154	82	2	4	156	2	153	3.61e-36	125
MsaG012871	AT1G65360.1	52.632	114	52	1	5	118	3	114	2.33e-35	123
MsaG012871	AT2G34440.1	36.667	150	93	2	9	158	2	149	1.55e-27	101
MsaG012871	AT3G04100.1	32.934	167	95	5	2	157	7	167	1.52e-24	94.7
MsaG012871	AT3G66656.1	38.760	129	75	1	9	133	2	130	5.86e-24	92.4
MsaG012871	AT1G72350.1	36.000	150	63	4	9	158	43	159	5.50e-22	88.6
MsaG012871	AT4G09960.2	39.231	130	69	5	9	131	2	128	1.00e-20	84.7

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Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAAATACCTTTCCACT+AGG	0.624124	3:+35506737	None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG	0.625617	3:-35506827	MsaT012871.1:CDS
AGCAGCATCTGCACCACAAA+GGG	0.492573	3:+35506775	None:intergenic
AGCATTGAGTTCACGAACGT+TGG	0.603238	3:+35506616	None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG	0.424656	3:-35506788	MsaT012871.1:CDS
ATGAAGATTGGGGTGACCAA+AGG	0.594093	3:+35506718	None:intergenic
ATGGATGCCGAGAAGAAGAT+TGG	0.480508	3:-35506569	MsaT012871.1:CDS
CCATTTGCTCAAGGAAACGG+AGG	0.672367	3:-35506534	MsaT012871.1:CDS
CCTCCGTTTCCTTGAGCAAA+TGG	0.380041	3:+35506534	None:intergenic
CGGCACCATGCAACTCATTG+AGG	0.589770	3:-35506651	MsaT012871.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	35505829	35506927	35505829	ID=MsaG012871
Chr3	mRNA	35505829	35506927	35505829	ID=MsaT012871.1;Parent=MsaG012871
Chr3	exon	35505829	35505840	35505829	ID=MsaT012871.1.exon2;Parent=MsaT012871.1
Chr3	CDS	35505829	35505840	35505829	ID=cds.MsaT012871.1;Parent=MsaT012871.1
Chr3	exon	35506460	35506927	35506460	ID=MsaT012871.1.exon1;Parent=MsaT012871.1
Chr3	CDS	35506460	35506927	35506460	ID=cds.MsaT012871.1;Parent=MsaT012871.1

Gene Sequence

>MsaT012871.1

ATGTCGAGTGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTCATACGGTCATAGACCACTATCTTTCTCTTGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACATAATGGATGCCGAGAAGAAGATTGGCGATGAGCTGAACCATTTGCTCAAGGAAACGGAGGCTAATTTTTGGTGGGCTTGTCCGGTTAATGGAATGAATAAGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGTTGGTGATATAG

Protein sequence

>MsaT012871.1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLHTVIDHYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNIMDAEKKIGDELNHLLKETEANFWWACPVNGMNKDQLELFKKALELVI*