AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG012871

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012871 MtrunA17_Chr1g0208561 95.513 156 7 0 1 156 1 156 6.16e-110 312
MsaG012871 MtrunA17_Chr3g0089141 94.872 156 8 0 1 156 1 156 1.08e-108 308
MsaG012871 MtrunA17_Chr2g0325971 86.538 156 21 0 1 156 1 156 1.04e-98 283
MsaG012871 MtrunA17_Chr1g0208581 83.974 156 25 0 1 156 1 156 5.52e-96 276
MsaG012871 MtrunA17_Chr1g0206721 81.290 155 29 0 1 155 1 155 3.89e-91 265
MsaG012871 MtrunA17_Chr8g0355091 80.128 156 31 0 1 156 1 156 2.10e-88 258
MsaG012871 MtrunA17_Chr1g0206701 78.205 156 34 0 1 156 1 156 2.95e-88 257
MsaG012871 MtrunA17_Chr3g0099421 76.282 156 37 0 1 156 26 181 1.95e-86 253
MsaG012871 MtrunA17_Chr1g0149391 75.949 158 38 0 1 158 1 158 2.60e-86 252
MsaG012871 MtrunA17_Chr2g0292791 76.923 156 36 0 1 156 1 156 5.00e-86 251
MsaG012871 MtrunA17_Chr1g0206991 75.641 156 38 0 1 156 1 156 1.06e-85 249
MsaG012871 MtrunA17_Chr1g0187361 73.548 155 41 0 1 155 1 155 1.39e-80 238
MsaG012871 MtrunA17_Chr2g0300441 72.903 155 42 0 1 155 1 155 4.31e-79 234
MsaG012871 MtrunA17_Chr2g0300421 86.364 132 18 0 1 132 1 132 8.64e-79 231
MsaG012871 MtrunA17_Chr1g0188671 69.032 155 48 0 1 155 39 193 3.95e-75 225
MsaG012871 MtrunA17_Chr3g0099411 83.465 127 21 0 1 127 1 127 8.06e-75 223
MsaG012871 MtrunA17_Chr1g0206691 74.820 139 35 0 18 156 1 139 1.66e-74 222
MsaG012871 MtrunA17_Chr5g0419601 69.231 156 48 0 1 156 1 156 4.68e-74 221
MsaG012871 MtrunA17_Chr5g0422421 68.590 156 49 0 1 156 1 156 3.57e-73 219
MsaG012871 MtrunA17_Chr2g0317451 66.026 156 53 0 1 156 1 156 1.12e-70 213
MsaG012871 MtrunA17_Chr2g0317481 66.026 156 53 0 1 156 1 156 1.18e-70 213
MsaG012871 MtrunA17_Chr5g0422941 66.667 156 52 0 1 156 1 156 6.20e-70 211
MsaG012871 MtrunA17_Chr3g0089151 69.697 132 40 0 1 132 1 132 9.41e-64 191
MsaG012871 MtrunA17_Chr7g0238991 68.182 132 42 0 24 155 36 167 3.62e-60 186
MsaG012871 MtrunA17_Chr3g0119901 56.081 148 65 0 9 156 9 156 1.36e-59 184
MsaG012871 MtrunA17_Chr3g0085241 53.896 154 71 0 3 156 35 188 3.67e-59 184
MsaG012871 MtrunA17_Chr3g0111931 61.165 103 40 0 21 123 2 104 2.09e-40 131
MsaG012871 MtrunA17_Chr8g0379021 41.558 154 80 2 5 155 8 154 3.91e-36 123
MsaG012871 MtrunA17_Chr2g0333981 40.000 150 80 2 5 151 8 150 8.51e-34 117
MsaG012871 MtrunA17_Chr1g0187351 78.788 66 14 0 18 83 1 66 5.80e-31 106
MsaG012871 MtrunA17_Chr3g0111841 81.356 59 11 0 15 73 2 60 4.39e-29 102
MsaG012871 MtrunA17_Chr4g0018951 41.060 151 77 3 5 155 8 146 6.17e-28 102
MsaG012871 MtrunA17_Chr4g0071601 38.125 160 79 4 5 151 8 160 4.61e-25 95.1
MsaG012871 MtrunA17_Chr1g0175601 41.964 112 62 2 9 119 2 111 4.78e-25 94.7
MsaG012871 MtrunA17_Chr1g0180591 44.643 112 57 3 9 118 2 110 1.27e-24 93.6
MsaG012871 MtrunA17_Chr4g0074101 39.683 126 60 4 9 118 2 127 3.45e-24 93.2
MsaG012871 MtrunA17_Chr8g0376821 56.522 69 30 0 9 77 2 70 5.72e-23 89.4
MsaG012871 MtrunA17_Chr1g0169761 56.522 69 30 0 9 77 2 70 7.45e-23 89.4
MsaG012871 MtrunA17_Chr1g0175611 51.948 77 37 0 9 85 2 78 8.64e-23 88.6
MsaG012871 MtrunA17_Chr4g0052081 44.000 100 55 1 9 107 2 101 3.05e-22 87.4
MsaG012871 MtrunA17_Chr4g0052061 41.584 101 57 1 9 109 2 100 1.11e-21 85.5
MsaG012871 MtrunA17_Chr3g0111831 65.079 63 22 0 16 78 11 73 1.44e-21 83.2
MsaG012871 MtrunA17_Chr8g0357771 55.072 69 31 0 9 77 2 70 2.24e-21 85.5
MsaG012871 MtrunA17_Chr8g0356071 39.683 126 67 4 9 132 2 120 2.68e-21 84.7
MsaG012871 MtrunA17_Chr3g0077501 51.471 68 33 0 9 76 2 69 5.10e-20 82.8
MsaG012871 MtrunA17_Chr4g0049901 56.061 66 29 0 10 75 29 94 2.51e-19 81.3
MsaG012871 MtrunA17_Chr4g0057151 52.239 67 32 0 10 76 3 69 3.08e-19 80.5
MsaG012871 MtrunA17_Chr5g0427401 50.000 68 34 0 9 76 2 69 5.23e-19 80.1
MsaG012871 MtrunA17_Chr3g0097101 38.760 129 76 3 3 129 11 138 8.16e-19 80.1
MsaG012871 MtrunA17_Chr8g0351041 46.154 78 42 0 10 87 3 80 9.28e-19 78.2
MsaG012871 MtrunA17_Chr3g0134451 44.118 102 54 3 9 109 2 101 1.40e-18 80.5
MsaG012871 MtrunA17_Chr8g0351051 48.148 81 38 2 7 85 2 80 2.16e-18 79.0
MsaG012871 MtrunA17_Chr8g0345001 33.125 160 82 4 8 155 17 163 2.94e-18 77.4
MsaG012871 MtrunA17_Chr1g0173161 51.562 64 31 0 9 72 2 65 3.36e-18 74.7
MsaG012871 MtrunA17_Chr5g0412271 48.571 70 35 1 9 77 2 71 4.67e-18 77.8
MsaG012871 MtrunA17_Chr8g0351031 49.275 69 35 0 10 78 3 71 5.11e-18 77.4
MsaG012871 MtrunA17_Chr5g0412461 40.187 107 52 4 9 108 2 103 6.16e-18 77.4
MsaG012871 MtrunA17_Chr1g0204111 51.471 68 33 0 9 76 18 85 7.16e-18 77.8
MsaG012871 MtrunA17_Chr7g0246431 49.254 67 34 0 10 76 3 69 9.20e-18 76.6
MsaG012871 MtrunA17_Chr2g0279821 47.059 68 36 0 9 76 2 69 9.80e-18 77.0
MsaG012871 MtrunA17_Chr2g0284911 36.842 114 71 1 9 122 17 129 1.10e-17 77.4
MsaG012871 MtrunA17_Chr2g0308251 45.833 72 38 1 9 79 2 73 1.17e-17 73.2
MsaG012871 MtrunA17_Chr4g0020221 50.000 68 34 0 9 76 2 69 1.26e-17 77.0
MsaG012871 MtrunA17_Chr4g0061691 47.887 71 34 2 7 76 2 70 1.29e-17 76.6
MsaG012871 MtrunA17_Chr6g0474371 49.296 71 33 2 7 76 2 70 1.58e-17 75.5
MsaG012871 MtrunA17_Chr8g0380021 48.529 68 35 0 9 76 18 85 2.72e-17 75.9
MsaG012871 MtrunA17_Chr6g0455511 47.826 69 35 1 9 76 2 70 8.60e-17 74.7
MsaG012871 MtrunA17_Chr5g0411691 47.059 68 36 0 9 76 2 69 8.77e-17 74.7
MsaG012871 MtrunA17_Chr7g0246381 51.515 66 27 1 9 69 2 67 1.01e-16 70.5
MsaG012871 MtrunA17_Chr7g0220111 49.296 71 33 2 7 76 2 70 1.19e-16 74.3
MsaG012871 MtrunA17_Chr8g0377561 40.000 80 48 0 9 88 2 81 1.96e-16 70.5
MsaG012871 MtrunA17_Chr4g0049541 36.066 122 69 4 9 126 2 118 3.17e-16 72.8
MsaG012871 MtrunA17_Chr1g0159661 48.485 66 33 1 9 74 2 66 3.75e-16 71.6
MsaG012871 MtrunA17_Chr4g0061671 52.542 59 26 1 7 65 2 58 5.47e-16 71.6
MsaG012871 MtrunA17_Chr5g0420091 53.571 56 26 0 9 64 2 57 5.79e-16 72.0
MsaG012871 MtrunA17_Chr5g0425191 50.769 65 32 0 9 73 2 66 8.22e-16 68.9
MsaG012871 MtrunA17_Chr8g0366231 52.632 57 27 0 9 65 2 58 9.23e-16 72.0
MsaG012871 MtrunA17_Chr5g0420081 51.786 56 27 0 9 64 2 57 1.01e-15 71.6
MsaG012871 MtrunA17_Chr3g0125241 45.714 70 36 1 9 76 27 96 1.29e-15 70.9
MsaG012871 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 1.45e-15 71.2
MsaG012871 MtrunA17_Chr7g0220121 42.029 69 39 1 9 76 2 70 2.21e-15 71.2
MsaG012871 MtrunA17_Chr3g0122251 55.357 56 25 0 9 64 2 57 2.55e-15 70.9
MsaG012871 MtrunA17_Chr4g0044071 54.386 57 26 0 9 65 2 58 2.91e-15 67.8
MsaG012871 MtrunA17_Chr3g0142191 45.714 70 36 1 9 76 2 71 4.01e-15 70.1
MsaG012871 MtrunA17_Chr1g0166611 37.383 107 58 2 20 125 17 115 8.03e-15 67.0
MsaG012871 MtrunA17_Chr5g0427921 45.763 59 32 0 9 67 2 60 8.06e-15 65.1
MsaG012871 MtrunA17_Chr1g0164791 45.714 70 36 1 9 76 2 71 1.88e-14 68.2
MsaG012871 MtrunA17_Chr4g0018421 29.747 158 78 5 9 157 2 135 2.04e-13 65.1
MsaG012871 MtrunA17_Chr4g0060841 42.667 75 41 1 9 81 2 76 1.30e-12 64.3
MsaG012871 MtrunA17_Chr4g0025531 30.968 155 87 4 1 153 1 137 2.31e-12 62.4
MsaG012871 MtrunA17_Chr5g0417661 41.667 72 36 1 9 80 57 122 6.78e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG012871 AT5G60440.1 58.065 155 62 2 5 156 3 157 7.60e-54 172
MsaG012871 AT2G24840.1 48.701 154 68 4 9 156 63 211 3.88e-39 134
MsaG012871 AT4G36590.1 46.914 162 76 4 5 158 3 162 3.21e-37 128
MsaG012871 AT1G01530.1 44.805 154 82 2 4 156 2 153 3.61e-36 125
MsaG012871 AT1G65360.1 52.632 114 52 1 5 118 3 114 2.33e-35 123
MsaG012871 AT2G34440.1 36.667 150 93 2 9 158 2 149 1.55e-27 101
MsaG012871 AT3G04100.1 32.934 167 95 5 2 157 7 167 1.52e-24 94.7
MsaG012871 AT3G66656.1 38.760 129 75 1 9 133 2 130 5.86e-24 92.4
MsaG012871 AT1G72350.1 36.000 150 63 4 9 158 43 159 5.50e-22 88.6
MsaG012871 AT4G09960.2 39.231 130 69 5 9 131 2 128 1.00e-20 84.7
MsaG012871 AT4G09960.1 39.669 121 67 4 9 126 2 119 1.47e-20 84.7
MsaG012871 AT4G09960.6 39.669 121 67 4 9 126 3 120 1.54e-20 84.7
MsaG012871 AT2G45660.2 51.471 68 33 0 10 77 3 70 1.66e-20 82.8
MsaG012871 AT4G09960.5 39.669 121 67 4 9 126 12 129 2.01e-20 84.7
MsaG012871 AT4G09960.3 39.669 121 67 4 9 126 28 145 2.95e-20 84.3
MsaG012871 AT4G09960.4 39.669 121 67 4 9 126 97 214 4.92e-20 85.1
MsaG012871 AT2G45660.1 51.471 68 33 0 10 77 3 70 8.59e-20 82.4
MsaG012871 AT4G24540.1 34.459 148 80 4 9 156 2 132 2.10e-19 81.6
MsaG012871 AT2G45650.1 51.471 68 33 0 9 76 2 69 3.89e-19 81.3
MsaG012871 AT1G28460.1 37.755 98 61 0 5 102 4 101 7.53e-19 79.3
MsaG012871 AT5G51870.2 53.731 67 31 0 10 76 3 69 1.23e-18 78.6
MsaG012871 AT2G22540.3 50.000 68 34 0 9 76 2 69 1.36e-18 79.7
MsaG012871 AT2G22540.1 50.000 68 34 0 9 76 2 69 1.36e-18 79.7
MsaG012871 AT4G22950.2 50.746 67 33 0 10 76 3 69 1.58e-18 78.2
MsaG012871 AT3G57230.2 45.588 68 37 0 9 76 2 69 1.84e-18 77.4
MsaG012871 AT5G51870.1 53.731 67 31 0 10 76 3 69 1.94e-18 78.6
MsaG012871 AT5G51870.5 51.389 72 35 0 5 76 21 92 2.27e-18 78.2
MsaG012871 AT5G51870.4 53.731 67 31 0 10 76 3 69 2.29e-18 79.0
MsaG012871 AT5G51870.3 53.731 67 31 0 10 76 13 79 2.78e-18 78.6
MsaG012871 AT5G10140.2 52.174 69 32 1 9 76 2 70 3.08e-18 77.4
MsaG012871 AT3G58780.1 37.405 131 68 4 2 126 12 134 3.47e-18 79.0
MsaG012871 AT2G42830.1 49.333 75 36 1 2 76 12 84 3.93e-18 78.6
MsaG012871 AT2G42830.2 49.333 75 36 1 2 76 12 84 3.97e-18 78.6
MsaG012871 AT3G58780.5 37.405 131 68 4 2 126 18 140 4.03e-18 79.0
MsaG012871 AT4G18960.1 39.252 107 55 1 2 108 11 107 4.04e-18 78.6
MsaG012871 AT5G62165.17 49.254 67 34 0 10 76 3 69 5.08e-18 76.3
MsaG012871 AT5G62165.12 49.254 67 34 0 10 76 3 69 5.08e-18 76.3
MsaG012871 AT5G62165.11 49.254 67 34 0 10 76 3 69 5.08e-18 76.3
MsaG012871 AT5G62165.14 49.254 67 34 0 10 76 3 69 5.30e-18 75.1
MsaG012871 AT5G10140.3 52.174 69 32 1 9 76 2 70 6.33e-18 77.0
MsaG012871 AT4G22950.3 50.746 67 33 0 10 76 3 69 6.82e-18 77.4
MsaG012871 AT4G22950.1 50.746 67 33 0 10 76 3 69 6.82e-18 77.4
MsaG012871 AT5G10140.4 52.174 69 32 1 9 76 2 70 6.84e-18 76.6
MsaG012871 AT4G37940.3 47.059 68 36 0 9 76 2 69 7.00e-18 76.6
MsaG012871 AT3G58780.4 37.405 131 68 4 2 126 12 134 7.72e-18 78.6
MsaG012871 AT4G37940.1 47.059 68 36 0 9 76 2 69 7.79e-18 77.4
MsaG012871 AT4G37940.4 47.059 68 36 0 9 76 2 69 7.79e-18 77.4
MsaG012871 AT5G10140.1 52.174 69 32 1 9 76 2 70 8.32e-18 76.6
MsaG012871 AT5G13790.2 51.471 68 33 0 9 76 2 69 1.03e-17 77.8
MsaG012871 AT5G13790.1 51.471 68 33 0 9 76 2 69 1.03e-17 77.8
MsaG012871 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.03e-17 75.5
MsaG012871 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.03e-17 75.5
MsaG012871 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.03e-17 75.5
MsaG012871 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.03e-17 75.5
MsaG012871 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.03e-17 75.5
MsaG012871 AT5G62165.10 49.254 67 34 0 10 76 3 69 1.60e-17 76.3
MsaG012871 AT5G62165.4 49.254 67 34 0 10 76 3 69 1.60e-17 76.3
MsaG012871 AT3G57230.1 45.588 68 37 0 9 76 2 69 1.80e-17 76.6
MsaG012871 AT3G57230.4 45.588 68 37 0 9 76 2 69 1.80e-17 76.6
MsaG012871 AT5G62165.3 49.254 67 34 0 10 76 3 69 1.87e-17 76.3
MsaG012871 AT5G62165.1 49.254 67 34 0 10 76 3 69 1.87e-17 76.3
MsaG012871 AT5G62165.2 49.254 67 34 0 10 76 3 69 1.87e-17 76.3
MsaG012871 AT1G29962.1 36.634 101 61 1 5 102 4 104 2.21e-17 75.5
MsaG012871 AT3G57390.3 48.529 68 35 0 9 76 2 69 2.63e-17 76.3
MsaG012871 AT5G51860.2 50.746 67 33 0 10 76 3 69 3.13e-17 75.5
MsaG012871 AT5G51860.1 50.746 67 33 0 10 76 3 69 4.58e-17 75.1
MsaG012871 AT3G57390.1 48.529 68 35 0 9 76 2 69 4.98e-17 75.9
MsaG012871 AT2G22540.2 57.143 56 24 0 9 64 2 57 9.27e-17 74.7
MsaG012871 AT3G30260.1 44.928 69 37 1 9 76 2 70 1.34e-16 74.7
MsaG012871 AT4G11880.2 57.143 56 24 0 10 65 3 58 1.88e-16 72.8
MsaG012871 AT4G11880.3 57.143 56 24 0 10 65 3 58 1.88e-16 72.8
MsaG012871 AT2G14210.1 44.928 69 37 1 9 76 2 70 2.37e-16 73.6
MsaG012871 AT3G61120.1 47.059 68 36 0 9 76 2 69 2.50e-16 73.9
MsaG012871 AT2G14210.2 44.928 69 37 1 9 76 2 70 3.06e-16 73.6
MsaG012871 AT1G26310.1 47.887 71 34 2 7 76 2 70 3.28e-16 73.6
MsaG012871 AT3G58780.2 37.302 126 68 4 2 126 12 127 3.37e-16 73.6
MsaG012871 AT4G11880.4 57.143 56 24 0 10 65 3 58 3.44e-16 73.2
MsaG012871 AT4G11880.1 57.143 56 24 0 10 65 3 58 3.44e-16 73.2
MsaG012871 AT5G65050.2 47.826 69 35 1 9 76 2 70 3.62e-16 72.0
MsaG012871 AT5G60910.1 46.377 69 36 1 9 76 2 70 3.95e-16 73.2
MsaG012871 AT5G15800.1 47.826 69 35 1 9 76 2 70 4.02e-16 73.6
MsaG012871 AT1G69120.2 55.932 59 24 1 7 65 2 58 4.91e-16 72.8
MsaG012871 AT3G58780.3 54.688 64 27 1 2 65 12 73 5.10e-16 73.6
MsaG012871 AT3G54340.1 45.205 73 38 1 9 79 2 74 5.57e-16 72.8
MsaG012871 AT1G77950.3 47.222 72 37 1 9 79 2 73 6.48e-16 72.8
MsaG012871 AT1G77950.2 47.222 72 37 1 9 79 2 73 6.48e-16 72.8
MsaG012871 AT1G77950.1 47.222 72 37 1 9 79 2 73 6.48e-16 72.8
MsaG012871 AT1G77950.4 47.222 72 37 1 9 79 2 73 6.48e-16 72.8
MsaG012871 AT5G15800.2 47.826 69 35 1 9 76 2 70 7.11e-16 72.8
MsaG012871 AT1G77980.1 50.000 72 35 1 9 79 2 73 7.63e-16 73.6
MsaG012871 AT1G22130.1 38.710 93 56 1 9 100 2 94 8.25e-16 73.6
MsaG012871 AT5G65050.3 47.826 69 35 1 9 76 2 70 8.70e-16 71.6
MsaG012871 AT5G65050.5 47.826 69 35 1 9 76 2 70 9.14e-16 71.2
MsaG012871 AT5G20240.2 46.575 73 37 1 9 79 2 74 9.47e-16 70.5
MsaG012871 AT5G65050.1 47.826 69 35 1 9 76 2 70 1.02e-15 70.9
MsaG012871 AT5G20240.1 46.575 73 37 1 9 79 2 74 1.07e-15 71.6
MsaG012871 AT2G03710.3 48.571 70 34 2 9 76 2 71 1.09e-15 70.9
MsaG012871 AT5G65060.3 47.826 69 35 1 9 76 2 70 1.12e-15 71.2
MsaG012871 AT1G69120.1 55.932 59 24 1 7 65 2 58 1.30e-15 72.0
MsaG012871 AT5G65060.2 47.826 69 35 1 9 76 2 70 1.44e-15 70.9
MsaG012871 AT5G65060.1 47.826 69 35 1 9 76 2 70 1.47e-15 70.9
MsaG012871 AT3G02310.2 46.377 69 36 1 9 76 2 70 1.48e-15 70.9
MsaG012871 AT5G23260.4 49.333 75 36 1 5 77 14 88 2.74e-15 71.2
MsaG012871 AT5G23260.1 49.333 75 36 1 5 77 14 88 3.02e-15 71.2
MsaG012871 AT1G24260.3 53.571 56 26 0 9 64 2 57 4.30e-15 70.5
MsaG012871 AT1G24260.2 53.571 56 26 0 9 64 2 57 4.41e-15 70.5
MsaG012871 AT1G24260.1 53.571 56 26 0 9 64 2 57 4.45e-15 70.5
MsaG012871 AT5G23260.2 50.704 71 33 1 9 77 2 72 5.60e-15 70.5
MsaG012871 AT5G23260.3 50.704 71 33 1 9 77 2 72 6.39e-15 70.1
MsaG012871 AT2G03710.2 48.571 70 34 2 9 76 2 71 6.71e-15 70.1
MsaG012871 AT2G03710.1 48.571 70 34 2 9 76 2 71 7.15e-15 70.1
MsaG012871 AT5G65070.4 40.580 69 40 1 9 76 2 70 7.81e-15 67.8
MsaG012871 AT3G02310.1 53.571 56 26 0 9 64 2 57 7.99e-15 69.7
MsaG012871 AT1G71692.1 46.377 69 36 1 10 77 3 71 8.74e-15 68.9
MsaG012871 AT5G65070.1 40.580 69 40 1 9 76 2 70 1.69e-14 68.2
MsaG012871 AT2G22630.1 42.647 68 39 0 9 76 2 69 1.98e-14 68.6
MsaG012871 AT2G22630.2 42.647 68 39 0 9 76 2 69 1.98e-14 68.6
MsaG012871 AT1G17310.1 52.703 74 33 1 8 81 47 118 2.67e-14 67.8
MsaG012871 AT1G28450.1 27.586 145 98 3 5 143 4 147 3.20e-14 67.0
MsaG012871 AT1G17310.2 50.633 79 37 1 8 86 58 134 3.95e-14 67.8
MsaG012871 AT5G65070.2 40.580 69 40 1 9 76 2 70 4.51e-14 67.4
MsaG012871 AT5G65070.5 47.368 57 30 0 9 65 2 58 6.44e-14 66.6
MsaG012871 AT1G47760.1 40.299 67 40 0 9 75 2 68 7.04e-14 66.2
MsaG012871 AT5G65070.3 47.368 57 30 0 9 65 2 58 7.49e-14 67.0
MsaG012871 AT1G18750.4 41.333 75 42 1 9 81 2 76 1.96e-13 67.0
MsaG012871 AT1G18750.3 41.333 75 42 1 9 81 2 76 2.02e-13 67.0
MsaG012871 AT1G18750.1 41.333 75 42 1 9 81 2 76 2.11e-13 67.0
MsaG012871 AT5G65080.3 48.148 54 28 0 9 62 9 62 7.98e-13 63.5
MsaG012871 AT4G37435.1 48.214 56 29 0 9 64 2 57 8.00e-13 63.5
MsaG012871 AT5G65080.2 48.148 54 28 0 9 62 9 62 1.18e-12 63.2
MsaG012871 AT2G26320.1 37.662 77 46 1 5 79 14 90 6.75e-12 59.3
MsaG012871 AT5G49420.1 36.170 94 53 2 5 91 3 96 7.78e-12 62.4
MsaG012871 AT1G77080.11 49.275 69 34 1 9 76 2 70 1.35e-11 60.1
MsaG012871 AT5G49490.1 37.500 88 48 2 5 85 41 128 1.67e-11 61.2
MsaG012871 AT5G27130.1 43.902 82 41 3 5 82 10 90 1.79e-11 61.2
MsaG012871 AT1G69540.1 41.892 74 42 1 9 81 2 75 1.87e-11 61.2
MsaG012871 AT1G77080.5 49.275 69 34 1 9 76 2 70 1.95e-11 59.3
MsaG012871 AT1G69540.2 41.892 74 42 1 9 81 2 75 2.70e-11 60.8
MsaG012871 AT1G77080.4 49.275 69 34 1 9 76 2 70 3.56e-11 59.3
MsaG012871 AT2G03060.3 49.057 53 27 0 9 61 2 54 6.70e-11 59.7
MsaG012871 AT2G03060.7 49.057 53 27 0 9 61 2 54 6.70e-11 59.7
MsaG012871 AT2G03060.1 49.057 53 27 0 9 61 2 54 6.70e-11 59.7
MsaG012871 AT2G03060.2 49.057 53 27 0 9 61 2 54 7.43e-11 59.7

Find 34 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTGGGCTTGTCCGGTTAA+TGG 0.250384 3:-35506503 MsaT012871.1:CDS
TCAACTTGAATTATTCAAAA+AGG 0.268977 3:-35506468 MsaT012871.1:CDS
TCCGGTTAATGGAATGAATA+AGG 0.314669 3:-35506492 MsaT012871.1:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 3:+35506837 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.375394 3:+35506562 None:intergenic
TCCTTATTCATTCCATTAAC+CGG 0.377037 3:+35506491 None:intergenic
CCTCCGTTTCCTTGAGCAAA+TGG 0.380041 3:+35506534 None:intergenic
GTCTATGACCGTATGAAGAT+TGG 0.395944 3:+35506706 None:intergenic
GACTCAAATCAACAACATAA+TGG 0.407196 3:-35506588 MsaT012871.1:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 3:-35506788 MsaT012871.1:CDS
GCCTTTCTTTCCACTCGACA+TGG 0.467815 3:+35506907 None:intergenic
TCTATGACCGTATGAAGATT+GGG 0.472924 3:+35506707 None:intergenic
ATGGATGCCGAGAAGAAGAT+TGG 0.480508 3:-35506569 MsaT012871.1:CDS
GAACCATTTGCTCAAGGAAA+CGG 0.490715 3:-35506537 MsaT012871.1:CDS
AGCAGCATCTGCACCACAAA+GGG 0.492573 3:+35506775 None:intergenic
TGGTCACCCCAATCTTCATA+CGG 0.566894 3:-35506714 MsaT012871.1:CDS
GCCATGTCGAGTGGAAAGAA+AGG 0.571063 3:-35506908 MsaT012871.1:CDS
CTCGTTGTATTCTCACCTAG+TGG 0.580084 3:-35506752 MsaT012871.1:CDS
TCGAGTGGAAAGAAAGGCCG+AGG 0.584906 3:-35506902 MsaT012871.1:CDS
CGGCACCATGCAACTCATTG+AGG 0.589770 3:-35506651 MsaT012871.1:CDS
ATGAAGATTGGGGTGACCAA+AGG 0.594093 3:+35506718 None:intergenic
AGCATTGAGTTCACGAACGT+TGG 0.603238 3:+35506616 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 3:-35506747 MsaT012871.1:CDS
GTGGTACAAGAGAAAGATAG+TGG 0.616578 3:+35506684 None:intergenic
TGAGCTGAACCATTTGCTCA+AGG 0.619764 3:-35506543 MsaT012871.1:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 3:+35506737 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 3:-35506827 MsaT012871.1:CDS
GAGCAGCATCTGCACCACAA+AGG 0.629318 3:+35506774 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 3:+35506624 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 3:+35506646 None:intergenic
CCATTTGCTCAAGGAAACGG+AGG 0.672367 3:-35506534 MsaT012871.1:CDS
TGTGTGTCAGCCATGTCGAG+TGG 0.672629 3:-35506917 None:intergenic
CTATGACCGTATGAAGATTG+GGG 0.706113 3:+35506708 None:intergenic
CTTGTACCACCACAAAACAA+CGG 0.721002 3:-35506671 MsaT012871.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr3 gene 35505829 35506927 35505829 ID=MsaG012871
Chr3 mRNA 35505829 35506927 35505829 ID=MsaT012871.1;Parent=MsaG012871
Chr3 exon 35505829 35505840 35505829 ID=MsaT012871.1.exon2;Parent=MsaT012871.1
Chr3 CDS 35505829 35505840 35505829 ID=cds.MsaT012871.1;Parent=MsaT012871.1
Chr3 exon 35506460 35506927 35506460 ID=MsaT012871.1.exon1;Parent=MsaT012871.1
Chr3 CDS 35506460 35506927 35506460 ID=cds.MsaT012871.1;Parent=MsaT012871.1
Gene Sequence

>MsaT012871.1

ATGTCGAGTGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTCATACGGTCATAGACCACTATCTTTCTCTTGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACATAATGGATGCCGAGAAGAAGATTGGCGATGAGCTGAACCATTTGCTCAAGGAAACGGAGGCTAATTTTTGGTGGGCTTGTCCGGTTAATGGAATGAATAAGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGTTGGTGATATAG
Protein sequence

>MsaT012871.1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLHTVIDHYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNIMDAEKKIGDELNHLLKETEANFWWACPVNGMNKDQLELFKKALELVI*