AlfalfaGEDB | MsaG012978

M. sativa ssp. caerulea / MsaG012978

KEGG: K03083
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012978	MCI05308.1	73.529	68	11	2	5	72	4	64	7.17e-21	94.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012978	sp\|P51139\|MSK3_MEDSA	73.529	68	11	2	5	72	229	289	6.37e-22	94.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012978	tr\|A0A392NZV8\|A0A392NZV8_9FABA	73.529	68	11	2	5	72	4	64	3.43e-21	94.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012978	MtrunA17_Chr7g0270371	73.529	68	11	2	5	72	230	290	4.06e-23	95.1
MsaG012978	MtrunA17_Chr1g0193081	72.059	68	12	2	5	72	230	290	2.73e-22	92.8
MsaG012978	MtrunA17_Chr7g0246591	70.588	68	13	2	5	72	296	356	5.20e-22	92.4
MsaG012978	MtrunA17_Chr2g0277011	70.588	68	13	2	5	72	245	305	7.14e-22	91.7
MsaG012978	MtrunA17_Chr1g0194201	70.588	68	13	2	5	72	230	290	7.30e-22	91.7
MsaG012978	MtrunA17_Chr8g0350311	69.118	68	14	2	5	72	294	354	4.87e-21	89.7
MsaG012978	MtrunA17_Chr2g0320011	67.647	68	15	2	5	72	243	303	2.25e-20	87.4
MsaG012978	MtrunA17_Chr2g0284091	64.706	68	17	2	5	72	195	255	1.45e-19	84.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012978	AT1G09840.11	69.118	68	14	2	5	72	111	171	6.76e-22	90.5
MsaG012978	AT3G05840.2	70.588	68	13	2	5	72	228	288	8.01e-22	91.7
MsaG012978	AT3G05840.1	70.588	68	13	2	5	72	228	288	8.01e-22	91.7
MsaG012978	AT5G26751.1	70.588	68	13	2	5	72	224	284	9.06e-22	91.7
MsaG012978	AT1G57870.1	70.588	68	13	2	5	72	237	297	9.79e-22	91.7
MsaG012978	AT1G57870.4	70.588	68	13	2	5	72	237	297	9.79e-22	91.7
MsaG012978	AT1G57870.2	70.588	68	13	2	5	72	237	297	9.79e-22	91.7
MsaG012978	AT1G57870.3	70.588	68	13	2	5	72	237	297	1.20e-21	91.7
MsaG012978	AT1G09840.3	69.118	68	14	2	5	72	238	298	1.88e-21	90.9
MsaG012978	AT1G09840.7	69.118	68	14	2	5	72	238	298	1.88e-21	90.9

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Find 32 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAATGTAAGATATGTT+TGG	0.414699	3:+38214094	None:intergenic
ACAAACCCTTCTGACCCTAT+AGG	0.451223	3:+38212120	None:intergenic
ACCAACTGAGCAGATGTCAA+TGG	0.568677	3:+38214017	None:intergenic
AGAGCTCCTGAGCTTATATT+CGG	0.474562	3:-38214060	MsaT012978.1:CDS
AGATAAACAATGTGCTCATT+TGG	0.319034	3:-38212348	MsaT012978.1:CDS
AGGAACCATCATACAAAGCA+TGG	0.519567	3:+38212140	None:intergenic
ATACACAGAAGCTAGTTAAC+TGG	0.448429	3:+38213968	None:intergenic
ATGGTTCCTATAGGGTCAGA+AGG	0.560974	3:-38212126	MsaT012978.1:CDS
ATTGATACTGAGAAGATTGT+TGG	0.390696	3:-38211923	MsaT012978.1:CDS
CAAACTTGTGGAAATTATCA+AGG	0.511188	3:-38213850	MsaT012978.1:intron

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	38211883	38214225	38211883	ID=MsaG012978
Chr3	mRNA	38211883	38214225	38211883	ID=MsaT012978.1;Parent=MsaG012978
Chr3	exon	38211883	38211975	38211883	ID=MsaT012978.1.exon6;Parent=MsaT012978.1
Chr3	CDS	38211883	38211975	38211883	ID=cds.MsaT012978.1;Parent=MsaT012978.1
Chr3	exon	38212060	38212203	38212060	ID=MsaT012978.1.exon5;Parent=MsaT012978.1
Chr3	CDS	38212060	38212203	38212060	ID=cds.MsaT012978.1;Parent=MsaT012978.1
Chr3	exon	38212334	38212450	38212334	ID=MsaT012978.1.exon4;Parent=MsaT012978.1
Chr3	CDS	38212334	38212450	38212334	ID=cds.MsaT012978.1;Parent=MsaT012978.1
Chr3	exon	38213851	38213901	38213851	ID=MsaT012978.1.exon3;Parent=MsaT012978.1
Chr3	CDS	38213851	38213901	38213851	ID=cds.MsaT012978.1;Parent=MsaT012978.1
Chr3	exon	38213972	38214128	38213972	ID=MsaT012978.1.exon2;Parent=MsaT012978.1
Chr3	CDS	38213972	38214128	38213972	ID=cds.MsaT012978.1;Parent=MsaT012978.1
Chr3	exon	38214218	38214225	38214218	ID=MsaT012978.1.exon1;Parent=MsaT012978.1
Chr3	CDS	38214218	38214225	38214218	ID=cds.MsaT012978.1;Parent=MsaT012978.1

Gene Sequence

>MsaT012978.1

ATGTCTTGGTTAGAGGTGAACCAAACATATCTTACATTTGTTTCTATGTACTATAGAGCTCCTGAGCTTATATTCGGTGCAACTAAGTACACCACAGCCATTGACATCTGCTCAGTTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGTTAACTAGCTTCTGTCCACTGTTTCCTAGTGAGAGTGGAGTAGACAAACTTGTGGAAATTATCAAGTTTAAGGTTAAACTCCAAGCATCTGATGTAACTGATGATGCAGTGTTTGTTGCTTTTGACACTGACATGGGTTTTCTTCTAGATAAACAATGTGCTCATTTGGTTGATGTAGCTAAGGGGAAGAAGATGCTTTTTAAAGTTCAGGCAGTTATTGGACCCCATGCTTTGTATGATGGTTCCTATAGGGTCAGAAGGGTTTGTATTGATGAAGCTATTATTGAATTGTTTCTCACTGATGATGAGATTTACTCTCCTTCTAAGGCGTTGACTGTTTCACTTGATGATGAGGTTATTGATACTGAGAAGATTGTTGGCTCGGTTGATGCTTCGCAGACTGAGGATTTTGTCTGTTAA

Protein sequence

>MsaT012978.1

MSWLEVNQTYLTFVSMYYRAPELIFGATKYTTAIDICSVGCVLGELLLGQLTSFCPLFPSESGVDKLVEIIKFKVKLQASDVTDDAVFVAFDTDMGFLLDKQCAHLVDVAKGKKMLFKVQAVIGPHALYDGSYRVRRVCIDEAIIELFLTDDEIYSPSKALTVSLDDEVIDTEKIVGSVDASQTEDFVC*