AlfalfaGEDB | MsaG012993

M. sativa ssp. caerulea / MsaG012993

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00249.34

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012993	PNY09911.1	77.707	157	13	1	1	135	1	157	5.68e-75	238

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012993	sp\|Q9SJW0\|PHL7_ARATH	74.561	114	8	1	43	135	9	122	1.76e-47	159

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012993	tr\|A0A2K3P3P7\|A0A2K3P3P7_TRIPR	77.707	157	13	1	1	135	1	157	2.71e-75	238

TFs/TRs:

Gene ID	Type	Classification
MsaG012993	TF	GARP-G2-like

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000135	MsaG012993	0.823539	2.318507e-53	5.604722e-51
MsaG000459	MsaG012993	0.843805	2.088126e-58	9.200517e-56
MsaG000613	MsaG012993	0.805604	2.084601e-49	3.205052e-47
MsaG000847	MsaG012993	0.821320	7.554789e-53	1.720636e-50
MsaG001026	MsaG012993	0.828485	1.568008e-54	4.346831e-52
MsaG001551	MsaG012993	0.870691	2.455323e-66	2.929252e-63
MsaG001810	MsaG012993	0.807149	9.881713e-50	1.575700e-47
MsaG001939	MsaG012993	0.823620	2.218979e-53	5.376335e-51
MsaG002043	MsaG012993	0.868192	1.583490e-65	1.702545e-62
MsaG002379	MsaG012993	0.834401	5.568603e-56	1.832242e-53
MsaG002489	MsaG012993	0.867708	2.260944e-65	2.383093e-62
MsaG002603	MsaG012993	0.876301	3.238052e-68	4.935182e-65
MsaG003420	MsaG012993	0.805165	2.574307e-49	3.917831e-47
MsaG003422	MsaG012993	0.832496	1.654987e-55	5.148046e-53
MsaG003470	MsaG012993	0.842140	5.765843e-58	2.408266e-55
MsaG003665	MsaG012993	0.880710	9.279916e-70	1.731644e-66
MsaG003831	MsaG012993	0.842483	4.681905e-58	1.977465e-55
MsaG003861	MsaG012993	0.865055	1.557004e-64	1.474273e-61
MsaG004070	MsaG012993	0.819875	1.615670e-52	3.541610e-50
MsaG004107	MsaG012993	0.860469	3.977366e-63	3.148671e-60
MsaG004112	MsaG012993	0.843543	2.451215e-58	1.071070e-55
MsaG004184	MsaG012993	0.870743	2.361521e-66	2.823483e-63
MsaG004452	MsaG012993	0.848026	1.506680e-59	7.637372e-57
MsaG004819	MsaG012993	0.827843	2.234177e-54	6.082957e-52
MsaG004887	MsaG012993	0.803934	4.635840e-49	6.856612e-47
MsaG004924	MsaG012993	0.810773	1.670356e-50	2.906807e-48
MsaG005060	MsaG012993	0.865732	9.555795e-65	9.295518e-62
MsaG005062	MsaG012993	0.872314	7.170410e-67	9.171027e-64
MsaG005100	MsaG012993	0.803912	4.683643e-49	6.923778e-47
MsaG005336	MsaG012993	0.828308	1.728970e-54	4.769073e-52
MsaG005568	MsaG012993	0.825836	6.704113e-54	1.725880e-51
MsaG005869	MsaG012993	0.846651	3.578404e-59	1.731805e-56
MsaG006141	MsaG012993	0.802814	7.888898e-49	1.136970e-46
MsaG006270	MsaG012993	0.841654	7.736791e-58	3.181978e-55
MsaG006324	MsaG012993	0.809820	2.675930e-50	4.550019e-48
MsaG006471	MsaG012993	0.887481	2.987362e-72	7.740028e-69
MsaG006809	MsaG012993	0.805953	1.761730e-49	2.730947e-47
MsaG007036	MsaG012993	0.879209	3.159905e-69	5.499684e-66
MsaG007091	MsaG012993	0.886915	4.895921e-72	1.232770e-68
MsaG007416	MsaG012993	0.863210	5.815481e-64	5.117078e-61
MsaG007534	MsaG012993	0.817936	4.435281e-52	9.242334e-50
MsaG007982	MsaG012993	0.815740	1.372021e-51	2.702393e-49
MsaG008511	MsaG012993	0.851455	1.677935e-60	9.562213e-58
MsaG008619	MsaG012993	0.822714	3.602721e-53	8.517051e-51
MsaG008643	MsaG012993	0.821562	6.646048e-53	1.523405e-50
MsaG010598	MsaG012993	0.819863	1.626246e-52	3.563605e-50
MsaG010706	MsaG012993	0.815382	1.647456e-51	3.215624e-49
MsaG011484	MsaG012993	0.867986	1.842267e-65	1.963920e-62
MsaG011704	MsaG012993	0.815530	1.527420e-51	2.992451e-49
MsaG011831	MsaG012993	0.801773	1.288938e-48	1.814017e-46
MsaG011887	MsaG012993	0.855447	1.213472e-61	7.967629e-59
MsaG012224	MsaG012993	0.849372	6.407630e-60	3.399562e-57
MsaG012294	MsaG012993	0.878178	7.261182e-69	1.205021e-65
MsaG042624	MsaG012993	0.837099	1.163110e-56	4.149747e-54
MsaG042996	MsaG012993	0.865203	1.399448e-64	1.333084e-61
MsaG043371	MsaG012993	0.803235	6.463431e-49	9.406373e-47
MsaG043725	MsaG012993	0.818331	3.615630e-52	7.611313e-50
MsaG043788	MsaG012993	0.802715	8.266839e-49	1.188738e-46
MsaG043817	MsaG012993	0.862476	9.769581e-64	8.353154e-61
MsaG044117	MsaG012993	0.843689	2.242088e-58	9.843072e-56
MsaG044200	MsaG012993	0.881081	6.841838e-70	1.298535e-66
MsaG044864	MsaG012993	0.826057	5.945882e-54	1.540116e-51
MsaG044916	MsaG012993	0.801350	1.573004e-48	2.192611e-46
MsaG045284	MsaG012993	0.879252	3.050738e-69	5.320117e-66
MsaG045331	MsaG012993	0.804978	2.814954e-49	4.265458e-47
MsaG045428	MsaG012993	0.847858	1.675517e-59	8.445508e-57
MsaG045819	MsaG012993	0.868941	9.092226e-66	1.008068e-62
MsaG045969	MsaG012993	0.850841	2.496171e-60	1.392650e-57
MsaG046022	MsaG012993	0.840848	1.257505e-57	5.041316e-55
MsaG046078	MsaG012993	0.852276	9.834421e-61	5.768596e-58
MsaG046123	MsaG012993	0.896360	8.985094e-76	3.731333e-72
MsaG046167	MsaG012993	0.847961	1.569986e-59	7.940500e-57
MsaG046173	MsaG012993	0.856061	8.045742e-62	5.401865e-59
MsaG046206	MsaG012993	0.800897	1.944373e-48	2.682655e-46
MsaG046540	MsaG012993	0.814277	2.888138e-51	5.482335e-49
MsaG046501	MsaG012993	0.832332	1.815626e-55	5.620751e-53
MsaG046503	MsaG012993	0.848254	1.304603e-59	6.662948e-57
MsaG046603	MsaG012993	0.832387	1.759849e-55	5.456812e-53
MsaG046745	MsaG012993	0.849795	4.889669e-60	2.631550e-57
MsaG046780	MsaG012993	0.869775	4.884229e-66	5.606618e-63
MsaG046960	MsaG012993	0.802403	9.578739e-49	1.367660e-46
MsaG046975	MsaG012993	0.827424	2.814567e-54	7.573207e-52
MsaG047077	MsaG012993	0.854860	1.794019e-61	1.153184e-58
MsaG047097	MsaG012993	0.878506	5.575245e-69	9.391765e-66
MsaG001072	MsaG012993	0.828325	1.713031e-54	4.727433e-52
MsaG005167	MsaG012993	0.800065	2.868146e-48	3.883631e-46
MsaG002617	MsaG012993	0.823382	2.521300e-53	6.069320e-51
MsaG006148	MsaG012993	0.818303	3.668167e-52	7.716171e-50
MsaG014164	MsaG012993	0.817331	6.063617e-52	1.244014e-49
MsaG013496	MsaG012993	0.802164	1.072493e-48	1.522862e-46
MsaG012993	MsaG022046	0.842762	3.950033e-58	1.683306e-55
MsaG012993	MsaG018912	0.823154	2.849131e-53	6.815839e-51
MsaG012993	MsaG020128	0.868248	1.518927e-65	1.636929e-62
MsaG012993	MsaG019847	0.833352	1.015820e-55	3.240061e-53
MsaG012993	MsaG018939	0.832422	1.725775e-55	5.356580e-53
MsaG012993	MsaG019816	0.823015	3.068353e-53	7.313043e-51
MsaG012993	MsaG026803	0.824940	1.090120e-53	2.737767e-51
MsaG012993	MsaG026407	0.830145	6.225519e-55	1.809227e-52
MsaG012993	MsaG028079	0.903806	5.549710e-79	3.558189e-75
MsaG012993	MsaG033602	0.854821	1.841846e-61	1.182233e-58
MsaG012993	MsaG034655	0.804779	3.096003e-49	4.669735e-47
MsaG012993	MsaG033348	0.830197	6.047673e-55	1.760145e-52
MsaG012993	MsaG031246	0.822141	4.889063e-53	1.138103e-50
MsaG012993	MsaG031638	0.833952	7.205198e-56	2.338996e-53
MsaG012993	MsaG033778	0.858991	1.102406e-62	8.249237e-60
MsaG012993	MsaG033259	0.865856	8.734172e-65	8.538637e-62
MsaG012993	MsaG038885	0.801522	1.450496e-48	2.029770e-46
MsaG012993	MsaG036736	0.824626	1.291471e-53	3.215627e-51
MsaG012993	MsaG036286	0.870057	3.955564e-66	4.594901e-63
MsaG012993	MsaG036043	0.840035	2.047335e-57	8.001366e-55
MsaG012993	MsaG035600	0.814192	3.013799e-51	5.708704e-49
MsaG012993	MsaG036866	0.818296	3.680666e-52	7.741180e-50
MsaG012993	MsaG038591	0.800294	2.578121e-48	3.508862e-46
MsaG012993	MsaG037531	0.831616	2.723130e-55	8.256737e-53
MsaG012993	MsaG037725	0.843417	2.647749e-58	1.152263e-55
MsaG012993	MsaG036685	0.812328	7.701763e-51	1.392415e-48
MsaG012993	MsaG039797	0.854428	2.389984e-61	1.512925e-58
MsaG012993	MsaG035418	0.834962	4.029548e-56	1.348211e-53
MsaG012993	MsaG036758	0.889435	5.325742e-73	1.524306e-69
MsaG012993	MsaG041442	0.868286	1.477023e-65	1.594198e-62
MsaG012993	MsaG044977	0.888897	8.588440e-73	2.390201e-69
MsaG012993	MsaG047025	0.816879	7.655647e-52	1.552395e-49
MsaG012723	MsaG012993	0.830930	4.008636e-55	1.191437e-52
MsaG014815	MsaG012993	0.873142	3.800284e-67	5.038504e-64
MsaG014848	MsaG012993	0.820733	1.029403e-52	2.308312e-50
MsaG015493	MsaG012993	0.854679	2.023637e-61	1.292436e-58
MsaG016209	MsaG012993	0.823945	1.864560e-53	4.557197e-51
MsaG016327	MsaG012993	0.858414	1.637036e-62	1.198872e-59
MsaG016419	MsaG012993	0.831201	3.442170e-55	1.031035e-52
MsaG016471	MsaG012993	0.814347	2.786813e-51	5.299426e-49
MsaG016663	MsaG012993	0.827332	2.960213e-54	7.944825e-52
MsaG016695	MsaG012993	0.874998	9.016149e-68	1.296570e-64
MsaG016884	MsaG012993	0.859590	7.302517e-63	5.590010e-60
MsaG017009	MsaG012993	0.846375	4.253849e-59	2.039925e-56
MsaG017051	MsaG012993	0.879681	2.153476e-69	3.829761e-66
MsaG017310	MsaG012993	0.803309	6.238769e-49	9.094898e-47
MsaG017644	MsaG012993	0.843678	2.257040e-58	9.905134e-56
MsaG017699	MsaG012993	0.833416	9.795955e-56	3.130545e-53
MsaG017827	MsaG012993	0.844255	1.583082e-58	7.078733e-56
MsaG017828	MsaG012993	0.835976	2.240129e-56	7.726042e-54
MsaG017954	MsaG012993	0.864366	2.551989e-64	2.350777e-61
MsaG017983	MsaG012993	0.847608	1.961841e-59	9.804710e-57
MsaG018035	MsaG012993	0.846013	5.331291e-59	2.526116e-56
MsaG018054	MsaG012993	0.872394	6.744145e-67	8.655262e-64
MsaG018286	MsaG012993	0.835308	3.300283e-56	1.115670e-53
MsaG018295	MsaG012993	0.809426	3.249631e-50	5.473136e-48
MsaG018641	MsaG012993	0.826832	3.892599e-54	1.030219e-51
MsaG019120	MsaG012993	0.856872	4.662427e-62	3.224542e-59
MsaG019160	MsaG012993	0.830347	5.561152e-55	1.625485e-52
MsaG019183	MsaG012993	0.803095	6.905214e-49	1.001697e-46
MsaG019213	MsaG012993	0.816312	1.023917e-51	2.046364e-49
MsaG019466	MsaG012993	0.840567	1.488538e-57	5.915263e-55
MsaG019527	MsaG012993	0.817766	4.843444e-52	1.004860e-49
MsaG019559	MsaG012993	0.870269	3.374467e-66	3.954705e-63
MsaG019649	MsaG012993	0.816661	8.559149e-52	1.725882e-49
MsaG019720	MsaG012993	0.873212	3.603162e-67	4.790993e-64
MsaG019907	MsaG012993	0.884447	4.085975e-71	9.109759e-68
MsaG020021	MsaG012993	0.825612	7.574525e-54	1.937721e-51
MsaG020240	MsaG012993	0.849821	4.806362e-60	2.589094e-57
MsaG020382	MsaG012993	0.845675	6.577928e-59	3.082074e-56
MsaG020550	MsaG012993	0.833759	8.052008e-56	2.599178e-53
MsaG020591	MsaG012993	0.802862	7.713034e-49	1.112837e-46
MsaG020733	MsaG012993	0.810357	2.053306e-50	3.537177e-48
MsaG020992	MsaG012993	0.863566	4.516979e-64	4.031283e-61
MsaG021222	MsaG012993	0.854108	2.953944e-61	1.848568e-58
MsaG022811	MsaG012993	0.807531	8.210304e-50	1.321123e-47
MsaG022927	MsaG012993	0.808394	5.390088e-50	8.854869e-48
MsaG023188	MsaG012993	0.837368	9.935699e-57	3.574019e-54
MsaG023376	MsaG012993	0.819057	2.478363e-52	5.317129e-50
MsaG023649	MsaG012993	0.856267	7.007044e-62	4.740291e-59
MsaG023711	MsaG012993	0.821595	6.528893e-53	1.497844e-50
MsaG023716	MsaG012993	0.820939	9.238461e-53	2.083015e-50
MsaG023793	MsaG012993	0.804488	3.558845e-49	5.331678e-47
MsaG023794	MsaG012993	0.832753	1.429798e-55	4.481004e-53
MsaG023834	MsaG012993	0.814047	3.243951e-51	6.122141e-49
MsaG023861	MsaG012993	0.830483	5.153174e-55	1.511982e-52
MsaG024134	MsaG012993	0.877578	1.173812e-68	1.895106e-65
MsaG024295	MsaG012993	0.830396	5.409230e-55	1.583346e-52
MsaG024480	MsaG012993	0.881353	5.463150e-70	1.050175e-66
MsaG025143	MsaG012993	0.827353	2.925819e-54	7.857070e-52
MsaG025153	MsaG012993	0.830730	4.484448e-55	1.325161e-52
MsaG025368	MsaG012993	0.823251	2.704986e-53	6.488244e-51
MsaG025641	MsaG012993	0.834052	6.805745e-56	2.215865e-53
MsaG026480	MsaG012993	0.829774	7.658178e-55	2.202050e-52
MsaG026686	MsaG012993	0.839230	3.308157e-57	1.260562e-54
MsaG026697	MsaG012993	0.809692	2.849877e-50	4.830771e-48
MsaG026829	MsaG012993	0.838298	5.743891e-57	2.126135e-54
MsaG026961	MsaG012993	0.845533	7.183787e-59	3.349950e-56
MsaG027198	MsaG012993	0.839711	2.483257e-57	9.606656e-55
MsaG027207	MsaG012993	0.831807	2.444549e-55	7.453977e-53
MsaG027210	MsaG012993	0.837704	8.155078e-57	2.963792e-54
MsaG027241	MsaG012993	0.807694	7.582048e-50	1.224836e-47
MsaG027291	MsaG012993	0.802505	9.128465e-49	1.306398e-46
MsaG027572	MsaG012993	0.838263	5.865622e-57	2.168793e-54
MsaG027715	MsaG012993	0.851892	1.263365e-60	7.311228e-58
MsaG027738	MsaG012993	0.852905	6.521153e-61	3.910381e-58
MsaG027828	MsaG012993	0.850397	3.322943e-60	1.825473e-57
MsaG028277	MsaG012993	0.800112	2.805646e-48	3.802963e-46
MsaG028420	MsaG012993	0.805035	2.739825e-49	4.157210e-47
MsaG028531	MsaG012993	0.809702	2.835838e-50	4.808151e-48
MsaG028661	MsaG012993	0.812805	6.062616e-51	1.109185e-48
MsaG028934	MsaG012993	0.809087	3.837295e-50	6.410375e-48
MsaG029048	MsaG012993	0.864633	2.107853e-64	1.962474e-61
MsaG029053	MsaG012993	0.832138	2.027410e-55	6.241635e-53
MsaG029091	MsaG012993	0.901098	8.730181e-78	4.764477e-74
MsaG029152	MsaG012993	0.850115	3.981920e-60	2.166298e-57
MsaG029213	MsaG012993	0.830494	5.120187e-55	1.502787e-52
MsaG029307	MsaG012993	0.863461	4.866123e-64	4.324953e-61
MsaG029402	MsaG012993	0.800375	2.481825e-48	3.384109e-46
MsaG029422	MsaG012993	0.845728	6.367383e-59	2.988682e-56
MsaG029561	MsaG012993	0.844122	1.718195e-58	7.649527e-56
MsaG029546	MsaG012993	0.872361	6.920151e-67	8.868338e-64
MsaG029618	MsaG012993	0.845905	5.701262e-59	2.691757e-56
MsaG029953	MsaG012993	0.845108	9.349788e-59	4.299718e-56
MsaG029947	MsaG012993	0.822588	3.854223e-53	9.080550e-51
MsaG029928	MsaG012993	0.803312	6.229701e-49	9.082265e-47
MsaG030038	MsaG012993	0.820344	1.263393e-52	2.804216e-50
MsaG030396	MsaG012993	0.859860	6.063712e-63	4.689291e-60
MsaG030902	MsaG012993	0.841925	6.568743e-58	2.725220e-55
MsaG031248	MsaG012993	0.810596	1.823910e-50	3.160291e-48
MsaG032279	MsaG012993	0.883495	9.148323e-71	1.948261e-67
MsaG032616	MsaG012993	0.846605	3.682197e-59	1.779353e-56
MsaG032901	MsaG012993	0.832183	1.975899e-55	6.090836e-53
MsaG032915	MsaG012993	0.863419	5.012635e-64	4.447771e-61
MsaG033231	MsaG012993	0.861972	1.393043e-63	1.167873e-60
MsaG033670	MsaG012993	0.837653	8.402552e-57	3.049040e-54
MsaG033721	MsaG012993	0.826326	5.135110e-54	1.340011e-51
MsaG033781	MsaG012993	0.839532	2.763267e-57	1.062951e-54
MsaG034217	MsaG012993	0.879055	3.580226e-69	6.186049e-66
MsaG034590	MsaG012993	0.877218	1.565109e-68	2.485589e-65
MsaG034974	MsaG012993	0.815817	1.319051e-51	2.603177e-49
MsaG035156	MsaG012993	0.801124	1.748495e-48	2.424792e-46
MsaG035380	MsaG012993	0.816388	9.849497e-52	1.972258e-49
MsaG035657	MsaG012993	0.834280	5.968391e-56	1.956616e-53
MsaG035743	MsaG012993	0.819662	1.806812e-52	3.938141e-50
MsaG038749	MsaG012993	0.871006	1.936228e-66	2.341559e-63
MsaG039981	MsaG012993	0.819647	1.820968e-52	3.967475e-50
MsaG040270	MsaG012993	0.870747	2.354106e-66	2.815193e-63
MsaG040577	MsaG012993	0.853686	3.903812e-61	2.406410e-58
MsaG040598	MsaG012993	0.809614	2.962582e-50	5.012276e-48
MsaG040600	MsaG012993	0.803015	7.173244e-49	1.038649e-46
MsaG040728	MsaG012993	0.853277	5.110068e-61	3.104664e-58
MsaG041229	MsaG012993	0.807878	6.933045e-50	1.124990e-47
MsaG041717	MsaG012993	0.869087	8.160057e-66	9.102007e-63
MsaG041754	MsaG012993	0.845170	8.999830e-59	4.146774e-56

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012993	MtrunA17_Chr2g0291021	80.892	157	8	1	1	135	1	157	9.85e-74	224
MsaG012993	MtrunA17_Chr7g0254981	60.000	110	21	1	49	135	50	159	1.61e-36	127
MsaG012993	MtrunA17_Chr7g0261911	52.846	123	32	2	33	135	252	368	4.72e-32	119
MsaG012993	MtrunA17_Chr1g0175091	47.059	119	45	1	35	135	244	362	3.41e-29	111
MsaG012993	MtrunA17_Chr1g0190301	50.000	126	40	2	33	135	156	281	4.72e-29	110
MsaG012993	MtrunA17_Chr8g0356501	53.636	110	28	2	49	135	37	146	8.15e-28	106
MsaG012993	MtrunA17_Chr7g0274471	51.852	108	32	1	48	135	217	324	1.52e-27	107
MsaG012993	MtrunA17_Chr2g0310011	52.727	110	29	2	49	135	35	144	1.82e-26	102
MsaG012993	MtrunA17_Chr7g0258551	40.650	123	54	1	44	147	207	329	6.59e-26	102
MsaG012993	MtrunA17_Chr5g0409731	47.414	116	29	2	52	135	28	143	1.15e-25	99.8
MsaG012993	MtrunA17_Chr4g0042451	43.333	120	37	3	47	135	15	134	5.36e-25	98.6
MsaG012993	MtrunA17_Chr2g0290991	42.857	119	36	1	49	135	39	157	4.90e-23	93.2
MsaG012993	MtrunA17_Chr6g0461641	43.200	125	35	3	47	135	40	164	6.13e-23	94.0
MsaG012993	MtrunA17_Chr5g0417521	38.346	133	50	2	47	147	13	145	2.64e-22	91.7
MsaG012993	MtrunA17_Chr1g0197171	42.857	112	35	2	49	131	44	155	7.43e-22	89.7
MsaG012993	MtrunA17_Chr7g0242521	43.119	109	40	2	49	135	13	121	2.39e-20	84.7
MsaG012993	MtrunA17_Chr2g0321461	38.760	129	39	2	47	135	43	171	2.63e-20	86.7
MsaG012993	MtrunA17_Chr1g0175071	38.686	137	65	2	49	166	177	313	1.55e-19	83.6
MsaG012993	MtrunA17_Chr2g0288601	68.627	51	16	0	52	102	74	124	5.08e-17	73.2
MsaG012993	MtrunA17_Chr1g0175081	44.615	65	36	0	35	99	8	72	1.40e-15	68.6
MsaG012993	MtrunA17_Chr7g0243081	63.265	49	18	0	52	100	74	122	8.85e-15	70.9
MsaG012993	MtrunA17_Chr2g0283951	62.264	53	20	0	52	104	92	144	3.40e-14	69.3
MsaG012993	MtrunA17_Chr3g0095611	54.717	53	24	0	52	104	22	74	4.38e-14	67.4
MsaG012993	MtrunA17_Chr6g0479431	63.265	49	18	0	52	100	205	253	4.87e-14	68.9
MsaG012993	MtrunA17_Chr1g0162931	62.264	53	20	0	52	104	21	73	4.96e-14	68.2
MsaG012993	MtrunA17_Chr1g0210911	50.725	69	34	0	36	104	9	77	7.00e-14	68.2
MsaG012993	MtrunA17_Chr2g0320231	50.725	69	34	0	32	100	80	148	7.89e-14	68.2
MsaG012993	MtrunA17_Chr8g0379121	63.265	49	18	0	52	100	114	162	1.02e-13	68.2
MsaG012993	MtrunA17_Chr8g0366281	63.265	49	18	0	52	100	176	224	1.32e-13	67.4
MsaG012993	MtrunA17_Chr7g0258531	32.000	150	75	3	13	135	171	320	1.87e-13	67.0
MsaG012993	MtrunA17_Chr5g0410741	63.265	49	18	0	52	100	222	270	1.99e-13	67.0
MsaG012993	MtrunA17_Chr3g0109981	63.265	49	18	0	52	100	277	325	2.80e-13	67.0
MsaG012993	MtrunA17_Chr1g0198601	38.889	108	54	3	2	99	156	261	8.73e-13	65.1
MsaG012993	MtrunA17_Chr1g0154261	61.224	49	19	0	52	100	129	177	9.13e-13	64.7
MsaG012993	MtrunA17_Chr5g0402631	42.593	108	55	3	49	155	214	315	4.56e-12	63.2
MsaG012993	MtrunA17_Chr4g0009991	47.761	67	34	1	41	107	59	124	1.40e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG012993	AT2G01060.1	74.561	114	8	1	43	135	9	122	1.79e-48	159
MsaG012993	AT5G29000.1	51.538	130	38	3	29	135	170	297	6.35e-30	112
MsaG012993	AT5G29000.3	51.538	130	38	3	29	135	170	297	6.35e-30	112
MsaG012993	AT4G13640.2	50.862	116	25	3	52	135	40	155	8.47e-30	110
MsaG012993	AT4G13640.1	50.862	116	25	3	52	135	40	155	8.88e-30	110
MsaG012993	AT5G29000.2	51.538	130	38	3	29	135	213	340	1.02e-29	112
MsaG012993	AT4G28610.1	50.000	126	40	2	31	135	209	332	1.71e-29	112
MsaG012993	AT1G79430.2	53.636	110	28	1	49	135	34	143	2.84e-29	110
MsaG012993	AT3G24120.1	50.862	116	25	3	52	135	44	159	4.64e-29	108
MsaG012993	AT3G24120.2	50.862	116	25	3	52	135	44	159	5.28e-29	108
MsaG012993	AT3G04450.4	46.923	130	42	3	30	135	181	307	9.48e-28	107
MsaG012993	AT3G04450.2	46.923	130	42	3	30	135	181	307	9.48e-28	107
MsaG012993	AT3G04450.1	46.923	130	42	3	30	135	221	347	1.29e-27	107
MsaG012993	AT5G06800.1	46.610	118	42	2	37	135	182	297	2.22e-27	105
MsaG012993	AT5G06800.2	44.715	123	42	2	37	135	182	302	1.22e-26	103
MsaG012993	AT2G20400.1	50.467	107	33	1	49	135	231	337	1.19e-25	101
MsaG012993	AT2G20400.2	50.000	108	33	1	49	135	231	338	1.50e-25	101
MsaG012993	AT3G13040.3	46.154	117	38	2	44	135	236	352	9.16e-25	99.8
MsaG012993	AT3G13040.1	46.154	117	38	2	44	135	236	352	9.16e-25	99.8
MsaG012993	AT3G13040.2	46.154	117	38	2	44	135	236	352	9.16e-25	99.8
MsaG012993	AT1G69580.1	42.063	126	36	3	47	135	32	157	8.73e-24	95.9
MsaG012993	AT1G69580.2	41.732	127	36	3	47	135	32	158	1.27e-23	95.5
MsaG012993	AT3G04030.1	41.060	151	48	5	23	135	19	166	2.16e-22	92.8
MsaG012993	AT3G12730.1	45.045	111	33	3	52	134	26	136	2.18e-22	90.1
MsaG012993	AT3G04030.3	41.060	151	48	5	23	135	19	166	2.61e-22	92.4
MsaG012993	AT5G18240.2	42.742	124	36	3	47	135	43	166	3.96e-22	92.0
MsaG012993	AT5G18240.3	42.742	124	36	3	47	135	43	166	3.96e-22	92.0
MsaG012993	AT5G18240.5	39.310	145	50	4	29	135	22	166	4.74e-22	91.7
MsaG012993	AT5G18240.1	39.310	145	50	4	29	135	22	166	4.81e-22	91.7
MsaG012993	AT5G18240.4	39.310	145	50	4	29	135	22	166	4.81e-22	91.7
MsaG012993	AT5G45580.1	72.917	48	13	0	52	99	10	57	3.97e-20	84.7
MsaG012993	AT5G29000.4	61.972	71	25	1	29	99	213	281	4.19e-20	85.5
MsaG012993	AT5G45580.2	72.917	48	13	0	52	99	26	73	5.59e-20	84.7
MsaG012993	AT2G01060.2	65.753	73	4	1	84	135	1	73	5.68e-20	84.0
MsaG012993	AT3G04030.2	40.397	151	48	6	23	135	19	165	8.87e-20	85.5
MsaG012993	AT3G04450.3	64.286	56	20	0	44	99	233	288	8.10e-19	82.0
MsaG012993	AT5G06800.3	55.556	63	26	1	37	99	182	242	6.50e-18	79.3
MsaG012993	AT4G04605.1	64.151	53	19	0	52	104	17	69	1.05e-15	72.4
MsaG012993	AT2G06020.1	42.308	78	42	1	25	99	59	136	2.40e-15	72.4
MsaG012993	AT2G40260.1	69.388	49	15	0	52	100	85	133	2.88e-15	72.8
MsaG012993	AT2G42660.1	67.347	49	16	0	52	100	53	101	2.92e-15	71.6
MsaG012993	AT5G42630.1	34.783	115	70	1	52	166	108	217	4.71e-15	71.2
MsaG012993	AT5G42630.2	39.394	99	55	1	52	150	108	201	2.98e-14	68.6
MsaG012993	AT2G38300.1	63.265	49	18	0	52	100	57	105	1.02e-13	68.2
MsaG012993	AT1G14600.1	67.347	49	16	0	52	100	26	74	1.19e-13	67.4
MsaG012993	AT2G02060.2	67.347	49	16	0	52	100	32	80	1.58e-13	67.0
MsaG012993	AT2G02060.1	67.347	49	16	0	52	100	32	80	1.58e-13	67.0
MsaG012993	AT1G32240.2	39.796	98	46	1	52	136	216	313	1.98e-13	67.4
MsaG012993	AT1G32240.1	39.796	98	46	1	52	136	216	313	2.06e-13	67.4
MsaG012993	AT4G17695.1	57.143	56	24	0	52	107	167	222	2.48e-13	67.0
MsaG012993	AT5G16560.1	63.265	49	18	0	52	100	222	270	2.84e-13	67.0
MsaG012993	AT4G37180.3	55.357	56	25	0	45	100	206	261	1.45e-12	64.3
MsaG012993	AT3G25790.2	59.574	47	19	0	54	100	201	247	3.65e-12	63.2
MsaG012993	AT4G37180.1	54.545	55	25	0	45	99	206	260	6.09e-12	63.2
MsaG012993	AT4G37180.2	54.545	55	25	0	45	99	213	267	7.44e-12	62.8
MsaG012993	AT4G04580.1	53.061	49	23	0	52	100	17	65	7.85e-12	60.8
MsaG012993	AT1G49560.2	59.615	52	21	0	49	100	192	243	4.35e-11	60.1
MsaG012993	AT3G25790.1	58.696	46	19	0	54	99	201	246	5.15e-11	60.5

Find 43 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAAGCAATCCATTAGTTAA+TGG	0.290398	3:-38628546	MsaT012993.1:CDS
ATGGCTCTTAACATGGTAAA+TGG	0.306660	3:+38628120	None:intergenic
CCATGTTAAGAGCCATTTGC+AGG	0.349218	3:-38628113	MsaT012993.1:CDS
ATATGTTGACCATTAACTAA+TGG	0.354268	3:+38628537	None:intergenic
GATATGCTTTCCATTCTAGA+TGG	0.374580	3:-38627779	MsaT012993.1:CDS
CATAACTCTGAGGACACCTT+TGG	0.375653	3:+38628159	None:intergenic
CAAAGGTGTCCTCAGAGTTA+TGG	0.377183	3:-38628158	MsaT012993.1:CDS
AATGGTCAACATATAGATTC+TGG	0.392543	3:-38628528	MsaT012993.1:CDS
AAAGGTGTCCTCAGAGTTAT+GGG	0.402741	3:-38628157	MsaT012993.1:CDS
TTTGTTGAGAGTGGTGATCT+TGG	0.403843	3:+38626874	None:intergenic
TGAGTTGAGAATAGAGTTGT+TGG	0.413671	3:+38628464	None:intergenic
GTTGCTGATTCGAGTTTAGT+TGG	0.426457	3:-38628567	MsaT012993.1:CDS
AGTGGTGATCTTGGTGATGA+TGG	0.462542	3:+38626883	None:intergenic
GTTGATGCTGTGGCTCAACT+TGG	0.466308	3:-38628399	MsaT012993.1:CDS
GAAGCGACTACATGAACAAT+TGG	0.469698	3:-38627403	MsaT012993.1:CDS
ATAACTCTGAGGACACCTTT+GGG	0.476739	3:+38628160	None:intergenic
GGTAGAAGCGCAATGGATCC+TGG	0.480877	3:-38628507	MsaT012993.1:CDS
CTCAGAGTTATGGGTGTACA+AGG	0.485843	3:-38628148	MsaT012993.1:CDS
TGAAGCACTAAAGCTTCAAA+TGG	0.488754	3:-38627433	MsaT012993.1:CDS
TCACGATGAACCATCTAGAA+TGG	0.492563	3:+38627769	None:intergenic
AAGTGCACATTACCTGCAAA+TGG	0.502884	3:+38628101	None:intergenic
AGCGCAATGGATCCTGGTAG+TGG	0.503101	3:-38628501	MsaT012993.1:CDS
CCCTTAGGTGCCACACCCAA+AGG	0.505122	3:-38628175	MsaT012993.1:intron
TAAAAGACGTGTCTAGGAGT+AGG	0.511340	3:+38626807	None:intergenic
GATGCTGTGGCTCAACTTGG+TGG	0.512420	3:-38628396	MsaT012993.1:CDS
CTCGAATCAGCAACATTCGT+TGG	0.516899	3:+38628576	None:intergenic
CCTGCAAATGGCTCTTAACA+TGG	0.525821	3:+38628113	None:intergenic
ACTCAAAGCAACTCTTGCGT+TGG	0.536955	3:-38628446	MsaT012993.1:CDS
AAAAGACGTGTCTAGGAGTA+GGG	0.546153	3:+38626808	None:intergenic
TCTGAGGACACCTTTGGGTG+TGG	0.554653	3:+38628165	None:intergenic
TATACTCAGGATAGTGAACC+AGG	0.561334	3:-38626928	MsaT012993.1:intron
AGACTGTTTCCTCCACTACC+AGG	0.568775	3:+38628489	None:intergenic
GGTTGGTCGTCAAAGACTAA+AGG	0.576564	3:+38626904	None:intergenic
GTGATCTTGGTGATGATGGT+TGG	0.593758	3:+38626887	None:intergenic
GCGACTACATGAACAATTGG+AGG	0.598747	3:-38627400	MsaT012993.1:intron
TGAACGCTTTGTTGATGCTG+TGG	0.601507	3:-38628409	MsaT012993.1:CDS
GCCATGGCAAGCGAAAGAAA+AGG	0.604827	3:-38626848	MsaT012993.1:CDS
AGATTCTGGTAGAAGCGCAA+TGG	0.611720	3:-38628514	MsaT012993.1:CDS
AGCACTAAAGCTTCAAATGG+AGG	0.632582	3:-38627430	MsaT012993.1:CDS
TCGTCAAAGACTAAAGGACC+TGG	0.651924	3:+38626910	None:intergenic
GCAATGGATCCTGGTAGTGG+AGG	0.656586	3:-38628498	MsaT012993.1:CDS
GGGGAAAACACTCACGATCG+GGG	0.661843	3:+38628373	None:intergenic
CTTGTACACCCATAACTCTG+AGG	0.715783	3:+38628149	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	38626819	38628607	38626819	ID=MsaG012993
Chr3	mRNA	38626819	38628607	38626819	ID=MsaT012993.1;Parent=MsaG012993
Chr3	exon	38626819	38626941	38626819	ID=MsaT012993.1.exon5;Parent=MsaT012993.1
Chr3	CDS	38626819	38626941	38626819	ID=cds.MsaT012993.1;Parent=MsaT012993.1
Chr3	exon	38627401	38627470	38627401	ID=MsaT012993.1.exon4;Parent=MsaT012993.1
Chr3	CDS	38627401	38627470	38627401	ID=cds.MsaT012993.1;Parent=MsaT012993.1
Chr3	exon	38627773	38627805	38627773	ID=MsaT012993.1.exon3;Parent=MsaT012993.1
Chr3	CDS	38627773	38627805	38627773	ID=cds.MsaT012993.1;Parent=MsaT012993.1
Chr3	exon	38628109	38628190	38628109	ID=MsaT012993.1.exon2;Parent=MsaT012993.1
Chr3	CDS	38628109	38628190	38628109	ID=cds.MsaT012993.1;Parent=MsaT012993.1
Chr3	exon	38628388	38628607	38628388	ID=MsaT012993.1.exon1;Parent=MsaT012993.1
Chr3	CDS	38628388	38628607	38628388	ID=cds.MsaT012993.1;Parent=MsaT012993.1

Gene Sequence

>MsaT012993.1

ATGTATCATCCAACGAATGTTGCTGATTCGAGTTTAGTTGGAAGCAATCCATTAGTTAATGGTCAACATATAGATTCTGGTAGAAGCGCAATGGATCCTGGTAGTGGAGGAAACAGTCTTGCCAACAACTCTATTCTCAACTCAAAGCAACTCTTGCGTTGGACACATGAGCTACATGAACGCTTTGTTGATGCTGTGGCTCAACTTGGTGGCCCCGATCGTGCCACACCCAAAGGTGTCCTCAGAGTTATGGGTGTACAAGGCTTAACCATTTACCATGTTAAGAGCCATTTGCAGGTAATAATGGATATGCTTTCCATTCTAGATGGTTCATCGGGGATGCAGATTACTGAAGCACTAAAGCTTCAAATGGAGGTACAGAAGCGACTACATGAACAATTGGAGGATAGTGAACCAGGTCCTTTAGTCTTTGACGACCAACCATCATCACCAAGATCACCACTCTCAACAAAAAAGCCATGGCAAGCGAAAGAAAAGGATTTGTATGTAATGATGCCCTACTCCTAG

Protein sequence

>MsaT012993.1

MYHPTNVADSSLVGSNPLVNGQHIDSGRSAMDPGSGGNSLANNSILNSKQLLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQVIMDMLSILDGSSGMQITEALKLQMEVQKRLHEQLEDSEPGPLVFDDQPSSPRSPLSTKKPWQAKEKDLYVMMPYS*