AlfalfaGEDB | MsaG013019

M. sativa ssp. caerulea / MsaG013019

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006355 GO:0008150 GO:0008289 GO:0009536 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0035091 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0071944 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF01167.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013019	XP_003612033.1	75.309	243	25	3	1	210	1	241	1.20e-117	351

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013019	sp\|Q8GVE5\|TLP2_ARATH	50.847	236	85	4	1	210	1	231	5.77e-73	229

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013019	tr\|G7KEX1\|G7KEX1_MEDTR	75.309	243	25	3	1	210	1	241	5.73e-118	351

TFs/TRs:

Gene ID	Type	Classification
MsaG013019	TF	TUB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001700	MsaG013019	0.819573	1.892934e-52	4.116264e-50
MsaG003306	MsaG013019	0.803242	6.440415e-49	9.374392e-47
MsaG003375	MsaG013019	0.870369	3.129306e-66	3.683017e-63
MsaG003517	MsaG013019	0.823687	2.141358e-53	5.197579e-51
MsaG004669	MsaG013019	0.863260	5.612300e-64	4.948561e-61
MsaG004838	MsaG013019	0.804847	2.997893e-49	4.528884e-47
MsaG005257	MsaG013019	0.839011	3.766356e-57	1.425561e-54
MsaG005881	MsaG013019	0.880309	1.289569e-69	2.361108e-66
MsaG006066	MsaG013019	0.835728	2.586546e-56	8.854636e-54
MsaG007762	MsaG013019	0.802859	7.722947e-49	1.114187e-46
MsaG010544	MsaG013019	0.801406	1.531541e-48	2.137564e-46
MsaG011563	MsaG013019	0.806256	1.522708e-49	2.377498e-47
MsaG012442	MsaG013019	0.836773	1.407324e-56	4.971748e-54
MsaG044707	MsaG013019	0.835490	2.968973e-56	1.009224e-53
MsaG045048	MsaG013019	0.811046	1.458867e-50	2.555797e-48
MsaG045582	MsaG013019	0.815758	1.359670e-51	2.679248e-49
MsaG045595	MsaG013019	0.821873	5.636562e-53	1.302710e-50
MsaG046492	MsaG013019	0.820718	1.037817e-52	2.326202e-50
MsaG017032	MsaG013019	0.865296	1.308467e-64	1.250963e-61
MsaG013019	MsaG032681	0.854911	1.735239e-61	1.117402e-58
MsaG013019	MsaG036566	0.804268	3.953197e-49	5.892507e-47
MsaG013019	MsaG043234	0.861658	1.735776e-63	1.437449e-60
MsaG013019	MsaG043778	0.807071	1.026453e-49	1.633691e-47
MsaG013019	MsaG041600	0.809525	3.094899e-50	5.225113e-48
MsaG015898	MsaG013019	0.842451	4.771517e-58	2.013253e-55
MsaG016351	MsaG013019	0.809217	3.600745e-50	6.033668e-48
MsaG016706	MsaG013019	0.801736	1.312023e-48	1.844938e-46
MsaG018783	MsaG013019	0.853785	3.656450e-61	2.261978e-58
MsaG020791	MsaG013019	0.819432	2.037394e-52	4.414348e-50
MsaG021729	MsaG013019	0.822926	3.217774e-53	7.650653e-51
MsaG023815	MsaG013019	0.826228	5.414836e-54	1.409205e-51
MsaG023942	MsaG013019	0.843645	2.303505e-58	1.009802e-55
MsaG027251	MsaG013019	0.823311	2.619727e-53	6.293892e-51
MsaG027305	MsaG013019	0.811855	9.754867e-51	1.743173e-48
MsaG027342	MsaG013019	0.823955	1.854042e-53	4.532772e-51
MsaG027971	MsaG013019	0.828350	1.688786e-54	4.663971e-52
MsaG028928	MsaG013019	0.804633	3.320093e-49	4.990684e-47
MsaG029233	MsaG013019	0.801833	1.253251e-48	1.766220e-46
MsaG029521	MsaG013019	0.809200	3.630237e-50	6.080661e-48
MsaG029875	MsaG013019	0.805643	2.046169e-49	3.148862e-47
MsaG029986	MsaG013019	0.832280	1.870619e-55	5.782283e-53
MsaG034409	MsaG013019	0.802973	7.318627e-49	1.058642e-46
MsaG035122	MsaG013019	0.801667	1.355067e-48	1.902477e-46
MsaG036954	MsaG013019	0.856064	8.030173e-62	5.391949e-59
MsaG038329	MsaG013019	0.817078	6.910396e-52	1.408541e-49
MsaG040708	MsaG013019	0.857588	2.871566e-62	2.039024e-59

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013019	MtrunA17_Chr5g0404321	75.309	243	25	3	1	210	1	241	1.10e-121	351
MsaG013019	MtrunA17_Chr8g0373001	56.846	241	71	3	1	210	1	239	1.37e-90	271
MsaG013019	MtrunA17_Chr8g0373361	48.523	237	90	5	1	210	11	242	2.77e-70	219
MsaG013019	MtrunA17_Chr1g0155301	45.594	261	89	6	1	210	1	259	4.67e-67	211
MsaG013019	MtrunA17_Chr2g0278511	44.980	249	92	9	1	210	1	243	7.03e-57	186
MsaG013019	MtrunA17_Chr2g0286441	46.948	213	103	3	4	210	17	225	1.01e-56	184
MsaG013019	MtrunA17_Chr1g0201891	43.496	246	97	7	1	210	1	240	6.72e-56	183
MsaG013019	MtrunA17_Chr1g0156151	46.729	214	79	6	1	181	1	212	4.11e-54	172
MsaG013019	MtrunA17_Chr2g0315641	41.667	216	110	4	4	205	10	223	3.81e-50	166
MsaG013019	MtrunA17_Chr8g0373331	41.494	241	66	6	1	210	1	197	1.54e-47	159
MsaG013019	MtrunA17_Chr1g0196071	45.989	187	92	3	25	205	47	230	4.60e-47	159
MsaG013019	MtrunA17_Chr2g0315651	40.097	207	111	3	5	204	14	214	7.64e-45	152
MsaG013019	MtrunA17_Chr3g0091401	69.792	96	23	1	65	160	9	98	2.20e-36	123
MsaG013019	MtrunA17_Chr8g0373341	41.553	219	53	7	1	170	1	193	1.67e-34	125
MsaG013019	MtrunA17_Chr8g0373351	37.079	178	45	8	25	198	16	130	7.86e-20	85.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013019	AT2G18280.2	50.847	236	85	4	1	210	1	231	5.86e-74	229
MsaG013019	AT2G18280.1	50.847	236	85	4	1	210	1	231	5.86e-74	229
MsaG013019	AT1G76900.2	43.478	253	94	7	1	210	1	247	2.90e-55	182
MsaG013019	AT1G76900.1	43.478	253	94	7	1	210	1	247	2.90e-55	182
MsaG013019	AT1G76900.3	43.478	253	94	7	1	210	1	247	2.90e-55	182
MsaG013019	AT1G25280.1	44.444	252	95	6	1	210	1	249	1.48e-54	180
MsaG013019	AT1G47270.3	49.180	183	76	4	25	200	41	213	6.88e-54	177
MsaG013019	AT1G47270.1	49.180	183	76	4	25	200	66	238	1.20e-53	177
MsaG013019	AT1G47270.2	49.180	183	76	4	25	200	65	237	1.22e-53	177
MsaG013019	AT1G53320.1	46.114	193	96	2	24	210	40	230	1.37e-52	173
MsaG013019	AT2G47900.3	47.423	194	92	3	25	210	49	240	3.43e-51	171
MsaG013019	AT2G47900.2	47.668	193	92	3	25	210	49	239	5.47e-51	170
MsaG013019	AT2G47900.1	47.668	193	92	3	25	210	49	239	5.47e-51	170
MsaG013019	AT1G43640.1	43.005	193	98	5	27	210	54	243	2.35e-48	164
MsaG013019	AT3G06380.1	41.892	222	111	6	1	210	1	216	1.76e-46	157
MsaG013019	AT5G18680.1	46.073	191	93	3	27	210	38	225	4.59e-44	151
MsaG013019	AT1G43640.2	43.333	180	90	5	40	210	1	177	1.30e-43	150
MsaG013019	AT5G18680.2	46.154	130	67	1	81	210	7	133	1.25e-26	103
MsaG013019	AT3G06380.2	46.032	126	62	3	85	210	5	124	2.74e-26	102
MsaG013019	AT1G61940.2	44.048	84	41	1	34	111	4	87	1.47e-19	84.3
MsaG013019	AT1G25280.3	50.704	71	34	1	141	210	1	71	5.46e-12	63.9
MsaG013019	AT1G25280.2	50.704	71	34	1	141	210	1	71	5.46e-12	63.9
MsaG013019	AT1G61940.1	46.552	58	25	1	34	85	4	61	6.98e-11	60.5

Find 57 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAGGTCTAACATTT+TGG	0.098131	3:-39273915	MsaT013019.1:CDS
CTCCTACTGGACCGGCTATT+TGG	0.181607	3:+39273833	None:intergenic
TCTGCGTATCTATTGTATTA+TGG	0.232029	3:-39274070	MsaT013019.1:CDS
CCAGTAGGAGATTTCTTTCT+AGG	0.241845	3:-39273820	MsaT013019.1:CDS
TCCTATTTCGTTAAATCAGC+TGG	0.277516	3:-39274143	MsaT013019.1:CDS
CGTCAACCTTCCACACTCTT+CGG	0.358084	3:+39274168	None:intergenic
CACAGACTTAATCATATCTA+TGG	0.360821	3:-39273978	MsaT013019.1:CDS
GTCAACCTTCCACACTCTTC+GGG	0.361120	3:+39274169	None:intergenic
CCCAGCTGATTTAACGAAAT+AGG	0.367273	3:+39274142	None:intergenic
TAGAAGAGACTGAGACTTCT+TGG	0.372030	3:-39274252	MsaT013019.1:CDS
GTGCTCCTGTGTGTGAATCT+TGG	0.372852	3:-39274222	MsaT013019.1:CDS
TAGTTATATGCTTGAACTCT+TGG	0.377661	3:+39273788	None:intergenic
AGGCAACCTCCACACGGATC+TGG	0.416160	3:-39273863	MsaT013019.1:CDS
CTCCGATACAATGCTTCATC+AGG	0.436765	3:-39274108	MsaT013019.1:CDS
ATATGAGCAATTCAGCTCAT+AGG	0.461752	3:+39273749	None:intergenic
ACCAATTTAGCAGGGACAAT+GGG	0.465957	3:-39274317	MsaT013019.1:intron
TAGGAGATTTCTTTCTAGGC+AGG	0.469861	3:-39273816	MsaT013019.1:CDS
CTCCTGTGTGTGAATCTTGG+AGG	0.478005	3:-39274219	MsaT013019.1:CDS
AACTCAAGGAGATGAGGGAT+GGG	0.484739	3:-39274435	MsaT013019.1:CDS
CGTTCCAGCAATGCGTATGT+TGG	0.488866	3:-39273938	MsaT013019.1:CDS
CCTATTTCGTTAAATCAGCT+GGG	0.495267	3:-39274142	MsaT013019.1:CDS
GAACTCAAGGAGATGAGGGA+TGG	0.505860	3:-39274436	MsaT013019.1:CDS
TGTTGTTGAGAAGCATAGTA+CGG	0.514474	3:-39274459	MsaT013019.1:CDS
CCTAGAAAGAAATCTCCTAC+TGG	0.516235	3:+39273820	None:intergenic
TCACTATATACGACATTGAC+AGG	0.521151	3:-39273883	MsaT013019.1:CDS
GTATTATGGACTGGTGCCAT+TGG	0.546205	3:-39274056	MsaT013019.1:CDS
TCCTGTGTGTGAATCTTGGA+GGG	0.550726	3:-39274218	MsaT013019.1:CDS
AAAGAAATCTCCTACTGGAC+CGG	0.552476	3:+39273825	None:intergenic
AAGCATAGTACGGGAACTCA+AGG	0.555180	3:-39274449	MsaT013019.1:CDS
AAGGAGATGAGGGATGGGAT+TGG	0.557067	3:-39274430	MsaT013019.1:CDS
TGCTACTTGATATAATTCGA+AGG	0.558581	3:-39274276	MsaT013019.1:CDS
AACCAATTTAGCAGGGACAA+TGG	0.568016	3:-39274318	MsaT013019.1:intron
AGATATGATTAAGTCTGTGC+CGG	0.568041	3:+39273982	None:intergenic
CGATACAATGCTTCATCAGG+AGG	0.568935	3:-39274105	MsaT013019.1:CDS
GTATCTATTGTATTATGGAC+TGG	0.570769	3:-39274065	MsaT013019.1:CDS
AATGTCGTATATAGTGAACT+TGG	0.574240	3:+39273889	None:intergenic
GCTACTTGATATAATTCGAA+GGG	0.575810	3:-39274275	MsaT013019.1:CDS
GTTGTTGAGAAGCATAGTAC+GGG	0.578798	3:-39274458	MsaT013019.1:CDS
CTGGAATTCAACCAAATAGC+CGG	0.579251	3:-39273844	MsaT013019.1:CDS
TACGGGAACTCAAGGAGATG+AGG	0.591073	3:-39274441	MsaT013019.1:CDS
CTCCTGATGAAGCATTGTAT+CGG	0.592254	3:+39274106	None:intergenic
CTGAACAATCTCTTGTGTAA+CGG	0.594307	3:+39274195	None:intergenic
ACGGGAACTCAAGGAGATGA+GGG	0.594362	3:-39274440	MsaT013019.1:CDS
ATGCGTATGTTGGAAAACTC+AGG	0.599772	3:-39273928	MsaT013019.1:CDS
AGCAATTCAGCTCATAGGAA+TGG	0.600877	3:+39273754	None:intergenic
AGACTCCCGAAGAGTGTGGA+AGG	0.609764	3:-39274174	MsaT013019.1:CDS
TCACACACAGGAGCACAAGA+AGG	0.618611	3:+39274229	None:intergenic
CATTGTATCGGAGAATCACA+AGG	0.642254	3:+39274118	None:intergenic
GTTCAGACTCCCGAAGAGTG+TGG	0.642949	3:-39274178	MsaT013019.1:CDS
ATTGGTAATACGTCGAGGAG+AGG	0.649495	3:-39274412	MsaT013019.1:CDS
AACCAAATAGCCGGTCCAGT+AGG	0.657951	3:-39273835	MsaT013019.1:CDS
GCCCTCCAAGATTCACACAC+AGG	0.660123	3:+39274217	None:intergenic
TGAATTCCAGATCCGTGTGG+AGG	0.662267	3:+39273857	None:intergenic
GATACAATGCTTCATCAGGA+GGG	0.667883	3:-39274104	MsaT013019.1:CDS
ATTGACAGGCAACCTCCACA+CGG	0.696401	3:-39273869	MsaT013019.1:CDS
ATGGGATTGGTAATACGTCG+AGG	0.700501	3:-39274417	MsaT013019.1:CDS
GGTTGAATTCCAGATCCGTG+TGG	0.703459	3:+39273854	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	39273760	39274482	39273760	ID=MsaG013019
Chr3	mRNA	39273760	39274482	39273760	ID=MsaT013019.1;Parent=MsaG013019
Chr3	exon	39273760	39274329	39273760	ID=MsaT013019.1.exon2;Parent=MsaT013019.1
Chr3	CDS	39273760	39274329	39273760	ID=cds.MsaT013019.1;Parent=MsaT013019.1
Chr3	exon	39274411	39274482	39274411	ID=MsaT013019.1.exon1;Parent=MsaT013019.1
Chr3	CDS	39274411	39274482	39274411	ID=cds.MsaT013019.1;Parent=MsaT013019.1

Gene Sequence

>MsaT013019.1

ATGTTGTTGAGAAGCATAGTACGGGAACTCAAGGAGATGAGGGATGGGATTGGTAATACGTCGAGGAGAGGTCAGGGACAATGGGTGAATATACAATCTGAATTGCTACTTGATATAATTCGAAGGGTAGAAGAGACTGAGACTTCTTGGCCTTCTTGTGCTCCTGTGTGTGAATCTTGGAGGGCCGTTACACAAGAGATTGTTCAGACTCCCGAAGAGTGTGGAAGGTTGACGTTTCCTATTTCGTTAAATCAGCTGGGTCCTTGTGATTCTCCGATACAATGCTTCATCAGGAGGGATAGAGAAACTTCTGCGTATCTATTGTATTATGGACTGGTGCCATTGGAAAATGAGACTGATAAGATGTTATTAGCTGCCAAAAAGATAAGGAAGACAGCCGGCACAGACTTAATCATATCTATGGTTGCAGTCGATTTTTCTCGTTCCAGCAATGCGTATGTTGGAAAACTCAGGTCTAACATTTTGGGAACCAAGTTCACTATATACGACATTGACAGGCAACCTCCACACGGATCTGGAATTCAACCAAATAGCCGGTCCAGTAGGAGATTTCTTTCTAGGCAGGTGTCTCCAAGAGTTCAAGCATATAACTATATTGTTAGCACCATTCCTATGAGCTGA

Protein sequence

>MsaT013019.1

MLLRSIVRELKEMRDGIGNTSRRGQGQWVNIQSELLLDIIRRVEETETSWPSCAPVCESWRAVTQEIVQTPEECGRLTFPISLNQLGPCDSPIQCFIRRDRETSAYLLYYGLVPLENETDKMLLAAKKIRKTAGTDLIISMVAVDFSRSSNAYVGKLRSNILGTKFTIYDIDRQPPHGSGIQPNSRSSRRFLSRQVSPRVQAYNYIVSTIPMS*