Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG013104 | ACJ85660.1 | 91.471 | 469 | 33 | 3 | 1 | 466 | 1 | 465 | 0.0 | 848 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG013104 | sp|Q8LFV3|CDF3_ARATH | 47.177 | 496 | 179 | 20 | 1 | 464 | 2 | 446 | 5.26e-108 | 330 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG013104 | tr|B7FLM6|B7FLM6_MEDTR | 91.471 | 469 | 33 | 3 | 1 | 466 | 1 | 465 | 0.0 | 848 |
Gene ID | Type | Classification |
---|---|---|
MsaG013104 | TF | C2C2-Dof |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG013104 | MtrunA17_Chr3g0092111 | 89.552 | 469 | 42 | 3 | 1 | 466 | 1 | 465 | 0.0 | 843 |
MsaG013104 | MtrunA17_Chr4g0042481 | 42.424 | 495 | 222 | 19 | 1 | 464 | 1 | 463 | 4.89e-104 | 318 |
MsaG013104 | MtrunA17_Chr6g0453321 | 41.667 | 516 | 230 | 18 | 1 | 466 | 1 | 495 | 1.48e-99 | 307 |
MsaG013104 | MtrunA17_Chr7g0217581 | 41.618 | 519 | 217 | 17 | 1 | 466 | 98 | 583 | 1.55e-98 | 307 |
MsaG013104 | MtrunA17_Chr5g0417561 | 34.461 | 473 | 185 | 16 | 4 | 464 | 2 | 361 | 6.58e-61 | 202 |
MsaG013104 | MtrunA17_Chr8g0355261 | 34.016 | 488 | 239 | 19 | 3 | 465 | 9 | 438 | 6.22e-60 | 202 |
MsaG013104 | MtrunA17_Chr5g0417551 | 37.228 | 368 | 124 | 12 | 108 | 464 | 98 | 369 | 3.69e-58 | 196 |
MsaG013104 | MtrunA17_Chr7g0254161 | 34.536 | 388 | 184 | 13 | 68 | 420 | 38 | 390 | 7.29e-51 | 178 |
MsaG013104 | MtrunA17_Chr5g0417571 | 47.712 | 153 | 68 | 4 | 59 | 201 | 57 | 207 | 2.28e-38 | 142 |
MsaG013104 | MtrunA17_Chr6g0460731 | 36.538 | 260 | 111 | 9 | 104 | 341 | 53 | 280 | 6.05e-38 | 142 |
MsaG013104 | MtrunA17_Chr6g0460721 | 35.959 | 292 | 138 | 11 | 106 | 358 | 48 | 329 | 1.92e-37 | 139 |
MsaG013104 | MtrunA17_Chr5g0417601 | 45.890 | 146 | 75 | 2 | 59 | 202 | 62 | 205 | 2.17e-34 | 132 |
MsaG013104 | MtrunA17_Chr5g0417601 | 41.530 | 183 | 70 | 8 | 286 | 464 | 230 | 379 | 1.67e-25 | 107 |
MsaG013104 | MtrunA17_Chr2g0283811 | 78.333 | 60 | 13 | 0 | 131 | 190 | 41 | 100 | 7.41e-31 | 117 |
MsaG013104 | MtrunA17_Chr8g0374111 | 61.644 | 73 | 28 | 0 | 137 | 209 | 29 | 101 | 7.97e-28 | 110 |
MsaG013104 | MtrunA17_Chr3g0127201 | 61.333 | 75 | 29 | 0 | 116 | 190 | 6 | 80 | 5.48e-27 | 110 |
MsaG013104 | MtrunA17_Chr2g0326001 | 72.881 | 59 | 16 | 0 | 132 | 190 | 35 | 93 | 4.71e-26 | 107 |
MsaG013104 | MtrunA17_Chr8g0346551 | 69.492 | 59 | 18 | 0 | 132 | 190 | 19 | 77 | 6.91e-26 | 106 |
MsaG013104 | MtrunA17_Chr1g0188851 | 72.222 | 54 | 15 | 0 | 139 | 192 | 45 | 98 | 2.27e-24 | 102 |
MsaG013104 | MtrunA17_Chr8g0374251 | 67.797 | 59 | 19 | 0 | 137 | 195 | 68 | 126 | 3.20e-24 | 103 |
MsaG013104 | MtrunA17_Chr4g0047001 | 76.923 | 52 | 12 | 0 | 139 | 190 | 57 | 108 | 4.08e-24 | 103 |
MsaG013104 | MtrunA17_Chr4g0010151 | 59.091 | 66 | 27 | 0 | 125 | 190 | 70 | 135 | 6.37e-24 | 102 |
MsaG013104 | MtrunA17_Chr1g0177251 | 66.129 | 62 | 20 | 1 | 139 | 199 | 14 | 75 | 6.67e-24 | 101 |
MsaG013104 | MtrunA17_Chr4g0030051 | 75.472 | 53 | 13 | 0 | 137 | 189 | 41 | 93 | 7.79e-24 | 101 |
MsaG013104 | MtrunA17_Chr3g0126201 | 73.077 | 52 | 14 | 0 | 139 | 190 | 53 | 104 | 1.03e-23 | 101 |
MsaG013104 | MtrunA17_Chr3g0117601 | 66.129 | 62 | 20 | 1 | 127 | 187 | 50 | 111 | 1.39e-23 | 101 |
MsaG013104 | MtrunA17_Chr2g0328021 | 70.370 | 54 | 16 | 0 | 137 | 190 | 62 | 115 | 2.09e-23 | 99.8 |
MsaG013104 | MtrunA17_Chr4g0031411 | 59.722 | 72 | 28 | 1 | 125 | 195 | 63 | 134 | 3.47e-23 | 100 |
MsaG013104 | MtrunA17_Chr8g0367161 | 51.807 | 83 | 34 | 1 | 108 | 190 | 9 | 85 | 4.85e-23 | 99.8 |
MsaG013104 | MtrunA17_Chr2g0308011 | 75.510 | 49 | 12 | 0 | 137 | 185 | 37 | 85 | 5.48e-23 | 96.7 |
MsaG013104 | MtrunA17_Chr8g0341671 | 64.516 | 62 | 22 | 0 | 137 | 198 | 20 | 81 | 6.47e-23 | 96.7 |
MsaG013104 | MtrunA17_Chr2g0282511 | 75.510 | 49 | 12 | 0 | 137 | 185 | 45 | 93 | 1.27e-22 | 98.2 |
MsaG013104 | MtrunA17_Chr2g0282051 | 75.000 | 52 | 12 | 1 | 139 | 190 | 48 | 98 | 2.71e-22 | 96.3 |
MsaG013104 | MtrunA17_Chr4g0047761 | 68.519 | 54 | 17 | 0 | 137 | 190 | 72 | 125 | 2.94e-22 | 97.1 |
MsaG013104 | MtrunA17_Chr2g0282441 | 72.000 | 50 | 14 | 0 | 139 | 188 | 27 | 76 | 2.94e-22 | 97.4 |
MsaG013104 | MtrunA17_Chr4g0061761 | 67.925 | 53 | 17 | 0 | 135 | 187 | 38 | 90 | 3.66e-22 | 97.1 |
MsaG013104 | MtrunA17_Chr7g0237921 | 57.576 | 66 | 28 | 0 | 125 | 190 | 64 | 129 | 4.11e-22 | 97.4 |
MsaG013104 | MtrunA17_Chr7g0223311 | 72.549 | 51 | 14 | 0 | 139 | 189 | 79 | 129 | 4.62e-22 | 97.4 |
MsaG013104 | MtrunA17_Chr5g0411951 | 63.636 | 55 | 20 | 0 | 133 | 187 | 39 | 93 | 1.17e-21 | 95.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG013104 | AT3G47500.1 | 47.177 | 496 | 179 | 20 | 1 | 464 | 2 | 446 | 5.35e-109 | 330 |
MsaG013104 | AT5G39660.3 | 38.791 | 513 | 204 | 22 | 6 | 466 | 3 | 457 | 1.81e-83 | 265 |
MsaG013104 | AT5G39660.1 | 38.791 | 513 | 204 | 22 | 6 | 466 | 3 | 457 | 1.81e-83 | 265 |
MsaG013104 | AT5G39660.2 | 38.791 | 513 | 204 | 22 | 6 | 466 | 3 | 457 | 1.81e-83 | 265 |
MsaG013104 | AT5G62430.1 | 44.297 | 377 | 112 | 12 | 94 | 464 | 12 | 296 | 2.93e-83 | 259 |
MsaG013104 | AT1G69570.1 | 34.091 | 484 | 212 | 20 | 1 | 465 | 1 | 396 | 1.47e-53 | 185 |
MsaG013104 | AT1G26790.1 | 32.880 | 368 | 163 | 13 | 106 | 464 | 78 | 370 | 3.00e-43 | 157 |
MsaG013104 | AT2G34140.1 | 56.989 | 93 | 40 | 0 | 98 | 190 | 19 | 111 | 3.58e-33 | 124 |
MsaG013104 | AT1G29160.1 | 80.000 | 60 | 12 | 0 | 131 | 190 | 56 | 115 | 2.53e-32 | 121 |
MsaG013104 | AT5G60200.1 | 50.000 | 110 | 50 | 2 | 133 | 237 | 51 | 160 | 8.36e-28 | 111 |
MsaG013104 | AT3G61850.1 | 65.079 | 63 | 22 | 0 | 132 | 194 | 69 | 131 | 3.31e-25 | 105 |
MsaG013104 | AT3G61850.2 | 65.079 | 63 | 22 | 0 | 132 | 194 | 57 | 119 | 3.38e-25 | 105 |
MsaG013104 | AT3G61850.3 | 65.079 | 63 | 22 | 0 | 132 | 194 | 57 | 119 | 3.38e-25 | 105 |
MsaG013104 | AT3G50410.1 | 71.930 | 57 | 16 | 0 | 137 | 193 | 30 | 86 | 3.39e-25 | 104 |
MsaG013104 | AT2G28510.1 | 71.186 | 59 | 17 | 0 | 139 | 197 | 50 | 108 | 4.14e-25 | 105 |
MsaG013104 | AT4G24060.1 | 62.121 | 66 | 25 | 0 | 125 | 190 | 41 | 106 | 4.35e-25 | 106 |
MsaG013104 | AT3G61850.5 | 65.079 | 63 | 22 | 0 | 132 | 194 | 57 | 119 | 4.96e-25 | 105 |
MsaG013104 | AT3G61850.4 | 65.079 | 63 | 22 | 0 | 132 | 194 | 69 | 131 | 5.20e-25 | 105 |
MsaG013104 | AT3G45610.1 | 61.905 | 63 | 24 | 0 | 133 | 195 | 36 | 98 | 5.81e-25 | 103 |
MsaG013104 | AT2G28810.2 | 65.574 | 61 | 21 | 0 | 128 | 188 | 68 | 128 | 2.12e-24 | 103 |
MsaG013104 | AT2G28810.1 | 65.574 | 61 | 21 | 0 | 128 | 188 | 85 | 145 | 3.26e-24 | 103 |
MsaG013104 | AT1G51700.1 | 57.333 | 75 | 28 | 1 | 137 | 207 | 33 | 107 | 3.28e-24 | 100 |
MsaG013104 | AT1G28310.1 | 74.074 | 54 | 14 | 0 | 137 | 190 | 27 | 80 | 3.93e-24 | 102 |
MsaG013104 | AT2G37590.1 | 38.519 | 135 | 49 | 3 | 125 | 226 | 77 | 210 | 6.30e-24 | 102 |
MsaG013104 | AT1G28310.2 | 74.074 | 54 | 14 | 0 | 137 | 190 | 51 | 104 | 6.48e-24 | 102 |
MsaG013104 | AT5G60850.1 | 62.121 | 66 | 25 | 0 | 125 | 190 | 39 | 104 | 1.07e-23 | 101 |
MsaG013104 | AT4G00940.1 | 67.797 | 59 | 19 | 0 | 132 | 190 | 63 | 121 | 1.16e-23 | 101 |
MsaG013104 | AT4G00940.3 | 67.797 | 59 | 19 | 0 | 132 | 190 | 63 | 121 | 1.16e-23 | 101 |
MsaG013104 | AT4G00940.2 | 67.797 | 59 | 19 | 0 | 132 | 190 | 63 | 121 | 1.16e-23 | 101 |
MsaG013104 | AT1G21340.1 | 62.295 | 61 | 22 | 1 | 139 | 198 | 40 | 100 | 1.25e-23 | 100 |
MsaG013104 | AT3G55370.1 | 55.714 | 70 | 31 | 0 | 133 | 202 | 72 | 141 | 1.27e-23 | 101 |
MsaG013104 | AT3G21270.1 | 73.585 | 53 | 14 | 0 | 137 | 189 | 29 | 81 | 1.31e-23 | 98.6 |
MsaG013104 | AT3G55370.2 | 55.714 | 70 | 31 | 0 | 133 | 202 | 72 | 141 | 1.42e-23 | 102 |
MsaG013104 | AT1G47655.1 | 77.551 | 49 | 11 | 0 | 137 | 185 | 29 | 77 | 1.72e-23 | 98.6 |
MsaG013104 | AT1G07640.1 | 71.698 | 53 | 15 | 0 | 137 | 189 | 21 | 73 | 1.92e-23 | 100 |
MsaG013104 | AT3G55370.3 | 55.714 | 70 | 31 | 0 | 133 | 202 | 117 | 186 | 2.05e-23 | 101 |
MsaG013104 | AT1G07640.2 | 71.698 | 53 | 15 | 0 | 137 | 189 | 77 | 129 | 2.10e-23 | 101 |
MsaG013104 | AT5G66940.1 | 48.315 | 89 | 43 | 1 | 111 | 196 | 3 | 91 | 2.61e-23 | 98.6 |
MsaG013104 | AT3G52440.1 | 68.421 | 57 | 18 | 0 | 139 | 195 | 27 | 83 | 2.66e-23 | 99.0 |
MsaG013104 | AT1G07640.3 | 71.698 | 53 | 15 | 0 | 137 | 189 | 85 | 137 | 2.84e-23 | 100 |
MsaG013104 | AT3G52440.2 | 68.421 | 57 | 18 | 0 | 139 | 195 | 46 | 102 | 3.17e-23 | 99.4 |
MsaG013104 | AT1G64620.1 | 63.934 | 61 | 22 | 0 | 125 | 185 | 37 | 97 | 3.50e-23 | 100 |
MsaG013104 | AT2G46590.1 | 69.811 | 53 | 16 | 0 | 132 | 184 | 63 | 115 | 5.14e-23 | 100 |
MsaG013104 | AT2G46590.2 | 69.811 | 53 | 16 | 0 | 132 | 184 | 75 | 127 | 6.22e-23 | 100 |
MsaG013104 | AT5G65590.1 | 70.370 | 54 | 16 | 0 | 137 | 190 | 41 | 94 | 6.93e-23 | 99.4 |
MsaG013104 | AT5G02460.1 | 59.091 | 66 | 27 | 0 | 125 | 190 | 83 | 148 | 1.92e-22 | 99.4 |
MsaG013104 | AT5G62940.1 | 73.469 | 49 | 13 | 0 | 139 | 187 | 75 | 123 | 1.80e-21 | 96.3 |
MsaG013104 | AT4G21050.1 | 57.971 | 69 | 29 | 0 | 122 | 190 | 9 | 77 | 2.46e-21 | 92.4 |
MsaG013104 | AT4G38000.1 | 64.286 | 56 | 19 | 1 | 136 | 191 | 40 | 94 | 6.40e-21 | 92.0 |
MsaG013104 | AT4G21040.1 | 63.462 | 52 | 19 | 0 | 139 | 190 | 27 | 78 | 1.59e-18 | 85.1 |
MsaG013104 | AT4G21080.1 | 61.538 | 52 | 20 | 0 | 139 | 190 | 27 | 78 | 9.26e-18 | 83.2 |
MsaG013104 | AT4G21030.1 | 59.091 | 44 | 18 | 0 | 139 | 182 | 23 | 66 | 1.28e-11 | 63.9 |
Find 102 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGAATGTTCCTTGGTTTC+CGG | 0.171508 | 3:-40881115 | MsaT013104.1:CDS |
GAATAGGGGTGGTATGATTA+AGG | 0.274373 | 3:-40880854 | MsaT013104.1:CDS |
ACACACCCATTTCTTTGTTT+TGG | 0.275673 | 3:+40880967 | None:intergenic |
TCAGCATCTTTATCTGCTTC+AGG | 0.276517 | 3:+40881942 | None:intergenic |
GCAAGGCGTGTCAAAGATAT+TGG | 0.279470 | 3:-40881635 | MsaT013104.1:CDS |
TGTCACAGTTTCAAAGTCTA+TGG | 0.284931 | 3:-40881316 | MsaT013104.1:CDS |
AAGCTGCAAAGAGTTCAATT+TGG | 0.294104 | 3:-40880906 | MsaT013104.1:CDS |
GAACTCTTTGCAGCTTCATT+TGG | 0.306321 | 3:+40880913 | None:intergenic |
TCTCAATCCTGCGGAGAAAA+AGG | 0.308287 | 3:-40881388 | MsaT013104.1:CDS |
TTCCCAAGCGTTGGAGATTT+CGG | 0.313791 | 3:+40881060 | None:intergenic |
GCAAGAATTATTTCTCCTAA+TGG | 0.319242 | 3:-40881501 | MsaT013104.1:CDS |
ACAAAGAAATGGGTGTGTTT+TGG | 0.324932 | 3:-40880962 | MsaT013104.1:CDS |
TAAGAATGAAGGTTTGAATA+GGG | 0.329266 | 3:-40880869 | MsaT013104.1:CDS |
GCGCCGGAATTCCATGTATA+AGG | 0.337826 | 3:+40881201 | None:intergenic |
CTTGACCTTGGAGTTGTTGC+GGG | 0.349538 | 3:+40881084 | None:intergenic |
AATGGTAGAGTTCTCAGCTT+TGG | 0.361480 | 3:-40881450 | MsaT013104.1:CDS |
TCATTACCACAGCAAAATAA+TGG | 0.365655 | 3:-40881264 | MsaT013104.1:CDS |
CTCAACGACACTCGAAATAA+TGG | 0.366706 | 3:-40881363 | MsaT013104.1:CDS |
AGCTGCAAAGAGTTCAATTT+GGG | 0.368742 | 3:-40880905 | MsaT013104.1:CDS |
GAATCACCAAAACAAAGAAA+TGG | 0.377047 | 3:-40880973 | MsaT013104.1:CDS |
TTAAGAATGAAGGTTTGAAT+AGG | 0.377391 | 3:-40880870 | MsaT013104.1:CDS |
GTGATTCTTCTGTTTGCAAA+TGG | 0.382048 | 3:+40880989 | None:intergenic |
CGAGCCGCCTGCGGCGGCGA+TGG | 0.382490 | 3:-40883988 | MsaT013104.1:CDS |
TTCTTGATCTCTGCGGCATC+TGG | 0.383443 | 3:+40881894 | None:intergenic |
TGGCCTTATACATGGAATTC+CGG | 0.391224 | 3:-40881204 | MsaT013104.1:CDS |
TGAAGATGATTAGTTCCATT+AGG | 0.393074 | 3:+40881486 | None:intergenic |
ATGGTAGAGTTCTCAGCTTT+GGG | 0.396367 | 3:-40881449 | MsaT013104.1:CDS |
AACCAAGGAACATTCCAAAA+AGG | 0.400329 | 3:+40881120 | None:intergenic |
TCTTGAGCGTTGTTGTTGTT+TGG | 0.409763 | 3:+40881768 | None:intergenic |
TGCTGGCGAGCCGCCTGCGG+CGG | 0.411724 | 3:-40883994 | MsaT013104.1:CDS |
GGTGAAGCTCTTATGATTGC+TGG | 0.413831 | 3:-40884011 | MsaT013104.1:CDS |
GCGCTGTTGCAGCGTGGACA+CGG | 0.414640 | 3:+40881714 | None:intergenic |
AGAAATGTTCCGGTCGGTGC+AGG | 0.415448 | 3:-40881594 | MsaT013104.1:CDS |
TCAAACCTCTCCAATGTTGA+TGG | 0.423970 | 3:-40880797 | MsaT013104.1:CDS |
GCCACAAACTTTGTGTCCCC+CGG | 0.437597 | 3:-40881169 | MsaT013104.1:CDS |
TTCTTATTTAAGAGTTCTCA+TGG | 0.441058 | 3:+40880740 | None:intergenic |
CATGTATGACTAGTGCTCCT+TGG | 0.447113 | 3:-40881224 | MsaT013104.1:CDS |
ATCTCTGCGGCATCTGGTGG+AGG | 0.457276 | 3:+40881900 | None:intergenic |
CGGAACAATGAGAAATGTTC+CGG | 0.461012 | 3:-40881604 | MsaT013104.1:CDS |
ACACTTGGAATTAAGAATGA+AGG | 0.464706 | 3:-40880880 | MsaT013104.1:CDS |
AATCACCAAAACAAAGAAAT+GGG | 0.469187 | 3:-40880972 | MsaT013104.1:CDS |
TAGAGTTCTCAGCTTTGGGT+TGG | 0.472520 | 3:-40881445 | MsaT013104.1:CDS |
AGTCCGAAATCTCCAACGCT+TGG | 0.476763 | 3:-40881063 | MsaT013104.1:CDS |
TAAAATGACATGGGAAATCC+CGG | 0.477882 | 3:+40881150 | None:intergenic |
AGTGATCTAGCTAAAGCTGC+AGG | 0.482293 | 3:+40880769 | None:intergenic |
GTCCGAAATCTCCAACGCTT+GGG | 0.486833 | 3:-40881062 | MsaT013104.1:CDS |
AACAATTCAGCAGCAACATT+GGG | 0.489579 | 3:-40881864 | MsaT013104.1:CDS |
GTGCTCCTTGGCCTTATACA+TGG | 0.498856 | 3:-40881212 | MsaT013104.1:CDS |
TCTACATCCATCGCCGCCGC+AGG | 0.504147 | 3:+40883981 | None:intergenic |
CTTGAGTGTTTCCCAAGCGT+TGG | 0.504202 | 3:+40881051 | None:intergenic |
TTTCTTCTCCCTGCACCGAC+CGG | 0.507717 | 3:+40881585 | None:intergenic |
AGTTCAATTTGGGAAACACT+TGG | 0.509045 | 3:-40880895 | MsaT013104.1:CDS |
TTGATCTCTGCGGCATCTGG+TGG | 0.510926 | 3:+40881897 | None:intergenic |
CGCTGTTGCAGCGTGGACAC+GGG | 0.514091 | 3:+40881715 | None:intergenic |
TGTCAAAGATATTGGACTGC+AGG | 0.515747 | 3:-40881627 | MsaT013104.1:CDS |
ACTTGACCTTGGAGTTGTTG+CGG | 0.517455 | 3:+40881083 | None:intergenic |
GGACACGGGAGTAATTTGTC+TGG | 0.517983 | 3:+40881729 | None:intergenic |
CAACGCTTGGGAAACACTCA+AGG | 0.518300 | 3:-40881050 | MsaT013104.1:CDS |
CAACAATTCAGCAGCAACAT+TGG | 0.525068 | 3:-40881865 | MsaT013104.1:CDS |
GGAGATTTCGGACTTGACCT+TGG | 0.526057 | 3:+40881072 | None:intergenic |
GGACACAAAGTTTGTGGCGA+GGG | 0.530054 | 3:+40881174 | None:intergenic |
CTTCAAAATTTGAAAACCAA+TGG | 0.530626 | 3:-40881468 | MsaT013104.1:CDS |
GAAGTTTCTTCATCTATGGA+AGG | 0.537934 | 3:+40881822 | None:intergenic |
GATGTAGAAGAAGAAAGAGA+TGG | 0.540568 | 3:-40883966 | MsaT013104.1:CDS |
ACATCCATCGCCGCCGCAGG+CGG | 0.542942 | 3:+40883984 | None:intergenic |
AAGAATGAAGGTTTGAATAG+GGG | 0.550009 | 3:-40880868 | MsaT013104.1:CDS |
GATTGCTGGCGAGCCGCCTG+CGG | 0.557979 | 3:-40883997 | MsaT013104.1:CDS |
TTGTGGCGAGGGAATTGCGC+CGG | 0.571745 | 3:+40881185 | None:intergenic |
GAATTCCATGTATAAGGCCA+AGG | 0.578932 | 3:+40881207 | None:intergenic |
TCAAAGTCTATGGAGGAAAG+TGG | 0.579037 | 3:-40881306 | MsaT013104.1:CDS |
AAAATGACATGGGAAATCCC+GGG | 0.581434 | 3:+40881151 | None:intergenic |
CAAGGAGCACTAGTCATACA+TGG | 0.583891 | 3:+40881225 | None:intergenic |
GTTGTTGCGGGAGTATGAGC+CGG | 0.587005 | 3:+40881096 | None:intergenic |
GCAGGGTTAGCCATCAACAT+TGG | 0.587131 | 3:+40880787 | None:intergenic |
AAAGCTGAGAACTCTACCAT+TGG | 0.588853 | 3:+40881452 | None:intergenic |
GACAATGAATCATAGATATG+TGG | 0.589586 | 3:+40881417 | None:intergenic |
AGGAGCAGGGTAAAATGACA+TGG | 0.595195 | 3:+40881140 | None:intergenic |
ATAAGAGCTTCACCTTCCCC+AGG | 0.600286 | 3:+40884020 | None:intergenic |
TGAAGAAGAAGAAATCGAGA+AGG | 0.603186 | 3:-40883916 | MsaT013104.1:intron |
CAAAGATATTGGACTGCAGG+CGG | 0.608252 | 3:-40881624 | MsaT013104.1:CDS |
AATGAAGGTTTGAATAGGGG+TGG | 0.610382 | 3:-40880865 | MsaT013104.1:CDS |
GAAATGTTCCGGTCGGTGCA+GGG | 0.612559 | 3:-40881593 | MsaT013104.1:CDS |
GGAGTATGAGCCGGAAACCA+AGG | 0.616307 | 3:+40881105 | None:intergenic |
CACAGTTTCAAAGTCTATGG+AGG | 0.616952 | 3:-40881313 | MsaT013104.1:CDS |
ATACTCCCGCAACAACTCCA+AGG | 0.620702 | 3:-40881089 | MsaT013104.1:CDS |
TGCATCAAGAGCCTCAGAGA+TGG | 0.626336 | 3:+40881524 | None:intergenic |
GTTAGCCATCAACATTGGAG+AGG | 0.627108 | 3:+40880792 | None:intergenic |
AACGCTTGGGAAACACTCAA+GGG | 0.635950 | 3:-40881049 | MsaT013104.1:CDS |
GTGATCTAGCTAAAGCTGCA+GGG | 0.636623 | 3:+40880770 | None:intergenic |
CTAGTCATACATGGAACTTG+AGG | 0.637687 | 3:+40881234 | None:intergenic |
ACATTGGAGAGGTTTGAACA+TGG | 0.639471 | 3:+40880803 | None:intergenic |
GGGACACAAAGTTTGTGGCG+AGG | 0.645797 | 3:+40881173 | None:intergenic |
GTCAAATGATCTCAATCCTG+CGG | 0.646844 | 3:-40881397 | MsaT013104.1:CDS |
GAGCCTCAGAGATGGTGATG+TGG | 0.657067 | 3:+40881532 | None:intergenic |
AAATGACATGGGAAATCCCG+GGG | 0.675311 | 3:+40881152 | None:intergenic |
GTTGTCGTTCTTGATCTCTG+CGG | 0.679992 | 3:+40881887 | None:intergenic |
ACAATGAGAAATGTTCCGGT+CGG | 0.680890 | 3:-40881600 | MsaT013104.1:CDS |
GGAGCAGGGTAAAATGACAT+GGG | 0.680900 | 3:+40881141 | None:intergenic |
TCGCCACATCACCATCTCTG+AGG | 0.699550 | 3:-40881535 | MsaT013104.1:CDS |
GTGTCCGCGCTGTTGCAGCG+TGG | 0.703298 | 3:+40881708 | None:intergenic |
GTGTCCACGCTGCAACAGCG+CGG | 0.758797 | 3:-40881712 | MsaT013104.1:CDS |
AATGACATGGGAAATCCCGG+GGG | 0.785488 | 3:+40881153 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 40880747 | 40884096 | 40880747 | ID=MsaG013104 |
Chr3 | mRNA | 40880747 | 40884096 | 40880747 | ID=MsaT013104.1;Parent=MsaG013104 |
Chr3 | exon | 40880747 | 40881967 | 40880747 | ID=MsaT013104.1.exon2;Parent=MsaT013104.1 |
Chr3 | CDS | 40880747 | 40881967 | 40880747 | ID=cds.MsaT013104.1;Parent=MsaT013104.1 |
Chr3 | exon | 40883917 | 40884096 | 40883917 | ID=MsaT013104.1.exon1;Parent=MsaT013104.1 |
Chr3 | CDS | 40883917 | 40884096 | 40883917 | ID=cds.MsaT013104.1;Parent=MsaT013104.1 |
Gene Sequence |
Protein sequence |