AlfalfaGEDB | MsaG013104

M. sativa ssp. caerulea / MsaG013104

KEGG: K16222
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013104	ACJ85660.1	91.471	469	33	3	1	466	1	465	0.0	848

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013104	sp\|Q8LFV3\|CDF3_ARATH	47.177	496	179	20	1	464	2	446	5.26e-108	330

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013104	tr\|B7FLM6\|B7FLM6_MEDTR	91.471	469	33	3	1	466	1	465	0.0	848

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013104	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013104	MtrunA17_Chr3g0092111	89.552	469	42	3	1	466	1	465	0.0	843
MsaG013104	MtrunA17_Chr4g0042481	42.424	495	222	19	1	464	1	463	4.89e-104	318
MsaG013104	MtrunA17_Chr6g0453321	41.667	516	230	18	1	466	1	495	1.48e-99	307
MsaG013104	MtrunA17_Chr7g0217581	41.618	519	217	17	1	466	98	583	1.55e-98	307
MsaG013104	MtrunA17_Chr5g0417561	34.461	473	185	16	4	464	2	361	6.58e-61	202
MsaG013104	MtrunA17_Chr8g0355261	34.016	488	239	19	3	465	9	438	6.22e-60	202
MsaG013104	MtrunA17_Chr5g0417551	37.228	368	124	12	108	464	98	369	3.69e-58	196
MsaG013104	MtrunA17_Chr7g0254161	34.536	388	184	13	68	420	38	390	7.29e-51	178
MsaG013104	MtrunA17_Chr5g0417571	47.712	153	68	4	59	201	57	207	2.28e-38	142
MsaG013104	MtrunA17_Chr6g0460731	36.538	260	111	9	104	341	53	280	6.05e-38	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013104	AT3G47500.1	47.177	496	179	20	1	464	2	446	5.35e-109	330
MsaG013104	AT5G39660.3	38.791	513	204	22	6	466	3	457	1.81e-83	265
MsaG013104	AT5G39660.1	38.791	513	204	22	6	466	3	457	1.81e-83	265
MsaG013104	AT5G39660.2	38.791	513	204	22	6	466	3	457	1.81e-83	265
MsaG013104	AT5G62430.1	44.297	377	112	12	94	464	12	296	2.93e-83	259
MsaG013104	AT1G69570.1	34.091	484	212	20	1	465	1	396	1.47e-53	185
MsaG013104	AT1G26790.1	32.880	368	163	13	106	464	78	370	3.00e-43	157
MsaG013104	AT2G34140.1	56.989	93	40	0	98	190	19	111	3.58e-33	124
MsaG013104	AT1G29160.1	80.000	60	12	0	131	190	56	115	2.53e-32	121
MsaG013104	AT5G60200.1	50.000	110	50	2	133	237	51	160	8.36e-28	111

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Find 102 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGACATGGGAAATCCC+GGG	0.581434	3:+40881151	None:intergenic
AAAGCTGAGAACTCTACCAT+TGG	0.588853	3:+40881452	None:intergenic
AAATGACATGGGAAATCCCG+GGG	0.675311	3:+40881152	None:intergenic
AACAATTCAGCAGCAACATT+GGG	0.489579	3:-40881864	MsaT013104.1:CDS
AACCAAGGAACATTCCAAAA+AGG	0.400329	3:+40881120	None:intergenic
AACGCTTGGGAAACACTCAA+GGG	0.635950	3:-40881049	MsaT013104.1:CDS
AAGAATGAAGGTTTGAATAG+GGG	0.550009	3:-40880868	MsaT013104.1:CDS
AAGCTGCAAAGAGTTCAATT+TGG	0.294104	3:-40880906	MsaT013104.1:CDS
AATCACCAAAACAAAGAAAT+GGG	0.469187	3:-40880972	MsaT013104.1:CDS
AATGAAGGTTTGAATAGGGG+TGG	0.610382	3:-40880865	MsaT013104.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	40880747	40884096	40880747	ID=MsaG013104
Chr3	mRNA	40880747	40884096	40880747	ID=MsaT013104.1;Parent=MsaG013104
Chr3	exon	40880747	40881967	40880747	ID=MsaT013104.1.exon2;Parent=MsaT013104.1
Chr3	CDS	40880747	40881967	40880747	ID=cds.MsaT013104.1;Parent=MsaT013104.1
Chr3	exon	40883917	40884096	40883917	ID=MsaT013104.1.exon1;Parent=MsaT013104.1
Chr3	CDS	40883917	40884096	40883917	ID=cds.MsaT013104.1;Parent=MsaT013104.1

Gene Sequence

>MsaT013104.1

ATGATTGAAACTAAGGACCCTGAAATTAAGCTTTTTGGGAAGAAGATTCTTTTTCCTGGGGAAGGTGAAGCTCTTATGATTGCTGGCGAGCCGCCTGCGGCGGCGATGGATGTAGAAGAAGAAAGAGATGGATATTATAGTGAGACTGAGAATGAAGATGAAGAAGAAGAAATCGAGAAGGATCCTGAAGCAGATAAAGATGCTGAGAAAAAGAAAGAAGCTGATCCTCCACCAGATGCCGCAGAGATCAAGAACGACAACAACAATTCAGCAGCAACATTGGGTATTCAGAACCCGAAAACACCTTCCATAGATGAAGAAACTTCAAAATCCGAAAACGAACAAAGTGATTCAACACCAAACAACAACAACGCTCAAGAGAAAACATTAAAGAAACCAGACAAATTACTCCCGTGTCCACGCTGCAACAGCGCGGACACAAAATTCTGTTACTACAATAATTACAACGTCAATCAGCCGCGCTATTTTTGCAAGGCGTGTCAAAGATATTGGACTGCAGGCGGAACAATGAGAAATGTTCCGGTCGGTGCAGGGAGAAGAAAAAATAAGAACAACTCTTCGTCACATTATCGCCACATCACCATCTCTGAGGCTCTTGATGCAGCAAGAATTATTTCTCCTAATGGAACTAATCATCTTCAAAATTTGAAAACCAATGGTAGAGTTCTCAGCTTTGGGTTGGATCATCCACATATCTATGATTCATTGTCAAATGATCTCAATCCTGCGGAGAAAAAGGTTCTCAACGACACTCGAAATAATGGTGATTGTTTTTCGAGTGCATCTTCTGTCACAGTTTCAAAGTCTATGGAGGAAAGTGGTAAAAACATGTCACAAGAATCATTACCACAGCAAAATAATGGTTTCATTCCTCAAGTTCCATGTATGACTAGTGCTCCTTGGCCTTATACATGGAATTCCGGCGCAATTCCCTCGCCACAAACTTTGTGTCCCCCGGGATTTCCCATGTCATTTTACCCTGCTCCTTTTTGGAATGTTCCTTGGTTTCCGGCTCATACTCCCGCAACAACTCCAAGGTCAAGTCCGAAATCTCCAACGCTTGGGAAACACTCAAGGGATGATGACAACAACAACGACGAAATAGCTAAGCAAGACCATTTGCAAACAGAAGAATCACCAAAACAAAGAAATGGGTGTGTTTTGGTTCCTAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCAATTTGGGAAACACTTGGAATTAAGAATGAAGGTTTGAATAGGGGTGGTATGATTAAGGCTTTTCAATCAAAGAAAGATGGTAAAAACCATGTTCAAACCTCTCCAATGTTGATGGCTAACCCTGCAGCTTTAGCTAGATCACTTAATTTCCATGAGAACTCTTAA

Protein sequence

>MsaT013104.1

MIETKDPEIKLFGKKILFPGEGEALMIAGEPPAAAMDVEEERDGYYSETENEDEEEEIEKDPEADKDAEKKKEADPPPDAAEIKNDNNNSAATLGIQNPKTPSIDEETSKSENEQSDSTPNNNNAQEKTLKKPDKLLPCPRCNSADTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNNSSSHYRHITISEALDAARIISPNGTNHLQNLKTNGRVLSFGLDHPHIYDSLSNDLNPAEKKVLNDTRNNGDCFSSASSVTVSKSMEESGKNMSQESLPQQNNGFIPQVPCMTSAPWPYTWNSGAIPSPQTLCPPGFPMSFYPAPFWNVPWFPAHTPATTPRSSPKSPTLGKHSRDDDNNNDEIAKQDHLQTEESPKQRNGCVLVPKTLRIDDPNEAAKSSIWETLGIKNEGLNRGGMIKAFQSKKDGKNHVQTSPMLMANPAALARSLNFHENS*