AlfalfaGEDB | MsaG013108

M. sativa ssp. caerulea / MsaG013108

KEGG: -
GO: -
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013108	XP_013459288.2	90.393	229	18	2	1	229	56	280	5.76e-138	398

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013108	sp\|Q9M9U9\|RKD1_ARATH	62.500	128	41	2	81	201	112	239	3.29e-49	165

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013108	tr\|A0A072UU07\|A0A072UU07_MEDTR	89.286	196	17	2	34	229	1	192	2.78e-122	354

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013108	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013108	MtrunA17_Chr3g0092141	89.286	196	17	2	34	229	1	192	5.36e-126	354
MsaG013108	MtrunA17_Chr4g0060761	51.562	192	82	6	27	208	82	272	3.74e-54	175
MsaG013108	MtrunA17_Chr3g0127001	49.107	112	51	1	94	205	154	259	1.56e-30	113
MsaG013108	MtrunA17_Chr1g0182631	47.321	112	53	1	94	205	127	232	1.70e-28	107
MsaG013108	MtrunA17_Chr5g0406901	36.719	128	73	2	80	200	188	314	3.33e-22	92.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013108	AT1G18790.1	62.500	128	41	2	81	201	112	239	3.34e-50	165
MsaG013108	AT1G74480.1	61.207	116	40	2	87	197	127	242	2.29e-42	145
MsaG013108	AT5G66990.1	50.746	134	59	2	75	203	142	273	4.61e-41	142
MsaG013108	AT5G53040.1	55.340	103	40	2	99	201	153	249	5.28e-31	115
MsaG013108	AT4G35590.2	37.313	134	72	2	94	220	192	320	2.40e-19	85.5
MsaG013108	AT4G35590.1	37.313	134	72	2	94	220	242	370	4.40e-19	85.1

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Find 41 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTGATGAAAACACAAAA+AGG	0.320323	3:-40994246	MsaT013108.1:CDS
AAGAAAAGGTGTAGGGATCT+TGG	0.330015	3:-40995207	MsaT013108.1:CDS
AATGTGTAAGCCCAACATTA+AGG	0.530566	3:+40995232	None:intergenic
ACATTTGAAGAAAAGGTGTA+GGG	0.575896	3:-40995214	MsaT013108.1:CDS
ACTTGATGCTGGAAATTATT+CGG	0.365304	3:-40995418	MsaT013108.1:CDS
AGAGAAGGCTCATGGTTATG+AGG	0.522137	3:-40994189	MsaT013108.1:CDS
AGAGTTTCATTTCGAAATTC+AGG	0.227635	3:+40995611	None:intergenic
AGGCTAATTACAAGAAGAGA+AGG	0.568624	3:-40994204	MsaT013108.1:CDS
AGGCTCATTAATTTCCTATG+TGG	0.543250	3:+40995171	None:intergenic
ATCAAAATTGGTATCTTGCA+TGG	0.445144	3:+40995655	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	40994102	40995675	40994102	ID=MsaG013108
Chr3	mRNA	40994102	40995675	40994102	ID=MsaT013108.1;Parent=MsaG013108
Chr3	exon	40994102	40994359	40994102	ID=MsaT013108.1.exon3;Parent=MsaT013108.1
Chr3	CDS	40994102	40994359	40994102	ID=cds.MsaT013108.1;Parent=MsaT013108.1
Chr3	exon	40995146	40995486	40995146	ID=MsaT013108.1.exon2;Parent=MsaT013108.1
Chr3	CDS	40995146	40995486	40995146	ID=cds.MsaT013108.1;Parent=MsaT013108.1
Chr3	exon	40995570	40995675	40995570	ID=MsaT013108.1.exon1;Parent=MsaT013108.1
Chr3	CDS	40995570	40995675	40995570	ID=cds.MsaT013108.1;Parent=MsaT013108.1

Gene Sequence

>MsaT013108.1

ATGCAAGATACCAATTTTGATCCTTTCATGGAAAATTATTATCCTGAATTTCGAAATGAAACTCTTCCACCTGAATTACTTGTACCTGCACCATTAAGCATAGAAGACTATGGTTATGGTGATGCTAAAAATGTGGTTCCAATGTGGAATGAACTTGATGCTGGAAATTATTCGGATAAACATATCTTTTCTATTAGCAACATTACTGGAGAAAATGTTGCAAAGGAAATTGTGAAGGGTAAGAGATGTAGAGAAGAGAATACTAATAGTGCAAGAATGCTAACAAAAGAAACAATTTCTGAGTACTTCTATGTGCCAATATCTCAAGCTGCTAGAGACCTTAATGTTGGGCTTACACATTTGAAGAAAAGGTGTAGGGATCTTGGAATTCAAAGGTGGCCACATAGGAAATTAATGAGCCTTCAAACCCTTATAAAGAATGTACAAGAGCAGGGTAATGAATGTGATGAAAAAATAAGAAATGCTGTGGAAGTATTGCAGAAAGAAATGAAGAAGGTAGAGGAAAAGCCAGATTTGCAACTTGATGAAAACACAAAAAGGCTTAGACAAGCATGTTTCAAGGCTAATTACAAGAAGAGAAGGCTCATGGTTATGAGGTTAATGGAACAACAGGAGTCTTCTCTCAGTGAAAGTGCAAGTGTTGATGATCACAAAAAGTCAAATTTCTTCTTAACATCATGTTAA

Protein sequence

>MsaT013108.1

MQDTNFDPFMENYYPEFRNETLPPELLVPAPLSIEDYGYGDAKNVVPMWNELDAGNYSDKHIFSISNITGENVAKEIVKGKRCREENTNSARMLTKETISEYFYVPISQAARDLNVGLTHLKKRCRDLGIQRWPHRKLMSLQTLIKNVQEQGNECDEKIRNAVEVLQKEMKKVEEKPDLQLDENTKRLRQACFKANYKKRRLMVMRLMEQQESSLSESASVDDHKKSNFFLTSC*