AlfalfaGEDB | MsaG013114

M. sativa ssp. caerulea / MsaG013114

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013114	RHN66541.1	84.841	409	38	3	29	419	1	403	0.0	697

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013114	sp\|P93755\|C3H30_ARATH	49.711	346	119	11	40	338	96	433	4.84e-88	285

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013114	tr\|A0A396IP67\|A0A396IP67_MEDTR	84.841	409	38	3	29	419	1	403	0.0	697

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013114	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000083	MsaG013114	0.834880	4.226837e-56	1.410766e-53
MsaG000113	MsaG013114	0.807373	8.862304e-50	1.420675e-47
MsaG000153	MsaG013114	0.832562	1.593869e-55	4.967342e-53
MsaG000235	MsaG013114	0.812905	5.765861e-51	1.057528e-48
MsaG000262	MsaG013114	0.802665	8.464112e-49	1.215766e-46
MsaG000292	MsaG013114	0.806483	1.364300e-49	2.141663e-47
MsaG000400	MsaG013114	0.803640	5.331004e-49	7.831119e-47
MsaG000643	MsaG013114	0.832170	1.990765e-55	6.134326e-53
MsaG001038	MsaG013114	0.816727	8.274954e-52	1.671446e-49
MsaG001157	MsaG013114	0.810983	1.505721e-50	2.633715e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013114	MtrunA17_Chr3g0092221	84.841	409	38	3	29	419	1	403	0.0	697
MsaG013114	MtrunA17_Chr3g0092171	62.531	403	101	6	40	419	131	506	1.38e-169	484
MsaG013114	MtrunA17_Chr3g0088521	59.113	406	84	12	40	367	93	494	1.65e-136	408
MsaG013114	MtrunA17_Chr3g0088521	40.299	134	51	4	314	418	548	681	1.07e-17	85.5
MsaG013114	MtrunA17_Chr7g0257831	47.044	406	131	13	40	367	95	494	1.35e-97	307
MsaG013114	MtrunA17_Chr7g0257831	61.224	49	19	0	370	418	627	675	5.82e-13	70.9
MsaG013114	MtrunA17_Chr1g0171151	41.237	388	162	10	40	362	80	466	3.19e-86	274
MsaG013114	MtrunA17_Chr5g0437251	41.813	342	135	12	33	338	85	398	2.11e-70	234
MsaG013114	MtrunA17_Chr5g0430211	44.706	255	108	6	137	358	197	451	2.51e-67	227
MsaG013114	MtrunA17_Chr1g0187591	66.187	139	45	1	147	283	206	344	4.28e-64	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013114	AT2G41900.1	49.711	346	119	11	40	338	96	433	4.92e-89	285
MsaG013114	AT5G12850.1	45.584	351	137	10	40	338	89	437	1.49e-79	259
MsaG013114	AT5G58620.1	54.167	216	78	6	147	346	186	396	1.17e-70	234
MsaG013114	AT2G40140.2	56.000	175	72	3	151	321	195	368	7.56e-63	213
MsaG013114	AT2G40140.1	56.000	175	72	3	151	321	195	368	7.56e-63	213
MsaG013114	AT3G55980.1	41.772	316	155	10	40	335	78	384	9.30e-63	212
MsaG013114	AT3G55980.2	41.772	316	155	10	40	335	145	451	3.96e-62	212
MsaG013114	AT2G25900.2	66.355	107	36	0	164	270	86	192	1.10e-49	171
MsaG013114	AT2G25900.1	66.355	107	36	0	164	270	86	192	1.10e-49	171
MsaG013114	AT1G03790.1	52.174	161	71	3	127	283	43	201	1.11e-46	165

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Find 100 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGATTGGTCCGTTAA+CGG	0.434602	3:-41049888	MsaT013114.1:CDS
AAACTTTGGAGCCACAGGAG+AGG	0.663839	3:+41050637	None:intergenic
AAAGGCAGTGCAAAAGGAGT+TGG	0.533658	3:+41050110	None:intergenic
AAATCTAACTGTCCGTATGG+CGG	0.639120	3:-41050939	MsaT013114.1:CDS
AACAGGTCGGCTCACTGAAA+TGG	0.465830	3:+41049944	None:intergenic
AATATGTTCCAAGACATTCA+TGG	0.483668	3:-41050020	MsaT013114.1:CDS
AATTTCGTCATCTTCATCTG+CGG	0.629046	3:-41050993	MsaT013114.1:CDS
ACACCAGCCTCTGGACCTGA+CGG	0.622231	3:+41050866	None:intergenic
ACAGCTGTGTCGGTAAACTT+TGG	0.463128	3:+41050623	None:intergenic
ACTGAAATGGCACCAGGACG+GGG	0.501239	3:+41049957	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	41049791	41051050	41049791	ID=MsaG013114
Chr3	mRNA	41049791	41051050	41049791	ID=MsaT013114.1;Parent=MsaG013114
Chr3	exon	41049791	41051050	41049791	ID=MsaT013114.1.exon1;Parent=MsaT013114.1
Chr3	CDS	41049791	41051050	41049791	ID=cds.MsaT013114.1;Parent=MsaT013114.1

Gene Sequence

>MsaT013114.1

ATGTACGGTGGTCCTAACAAATCAAAATCTCCTTCAATTTCGTCATCTTCATCTGCGGTAGAAGGTTCAAATATCGTCAATGACATGAAAAATCTAACTGTCCGTATGGCGGATTCAATCGTGGATGCTTCCTATGGGAGTATTGATACTTTAAATGTTTCACCGTCAGGTCCAGAGGCTGGTGTAAATGCTGCTGATGCTGATTCAAGTGGTTTGGTTAAGGCTGCTGATGCTGCTGGCGCTGATATCAATTGTGTGGATGTTAATGTTGTTCCTCATAAGCTCGAAATTGTGAAAACAAGTCTTGAAGGACTGGTTTTATCACCTGGGGCTGATATCGGTTGTCCTCATTCAGCTGCCCCTTTATCATCTGCTGAAAATGGATCTCCATCCTCTCCTGTGGCTCCAAAGTTTACCGACACAGCTGTTAATTCTACATCAGAAAAGAAAGAATATCCAATTGCACTTCCTAGTGTAGAAAGCAGCATGTACGCCACAGATGAATTTCGCATGTATTCGTTCAAGATCCTTCTTTGTCATCGTGCATACTCTCATGATTGGACCGAGTGTCCTTTTTACCATCCTTATGAGAATGCTCGAAGGAGAGACCTTAGAAAGTTCGCCTACAGCTGTGTGCCATGCCCTGATTTTAAAAAAGGGGATTGCAAACGTGCAGATAATTGTGAATTTGCTCATGGACTATTCGAGACCTGGCTACACCCAGATCGGTATCGCACCATTCTCTGCAAAGATGGTACTAGTTGTGACCGAAAGGTGTGCTTTTTTGCACATGTAGCTGAAGAGCTGCGTCCAATATATGTGTCCACTGGATCTGCTGTTCCTTTACCCCGATCAGCTGCATCTGCTCCTAATGTCATGGACATGGCTGCTGCTACGAGCCTTTATCGTGGTTTGCTACCAACTCCTTTTGCACTGCCTTTATCTCCATATGCAAACGGCATCTCTCCTTCAAATAATGCTTGGCCAGCTCTTCACTTTCCAGGAAGAAATATGTTCCAAGACATTCATGGTCAGCAGCATATGCTAAACGACATAAGCTGTTTCTCACAGCCCCGTCCTGGTGCCATTTCAGTGAGCCGACCTGTTAACTCCTGGTCTAAATGGGGTTCCAATACTGGAAAACTTGATTGGTCCGTTAACGGAAATGACTTTGATCGATCGCAACGATATACCTCTTTTGAGCATGGAAACAATGGTGATGAGCCTGATCTATCTTGGGTCCAATCTATTCTCAACTAA

Protein sequence

>MsaT013114.1

MYGGPNKSKSPSISSSSSAVEGSNIVNDMKNLTVRMADSIVDASYGSIDTLNVSPSGPEAGVNAADADSSGLVKAADAAGADINCVDVNVVPHKLEIVKTSLEGLVLSPGADIGCPHSAAPLSSAENGSPSSPVAPKFTDTAVNSTSEKKEYPIALPSVESSMYATDEFRMYSFKILLCHRAYSHDWTECPFYHPYENARRRDLRKFAYSCVPCPDFKKGDCKRADNCEFAHGLFETWLHPDRYRTILCKDGTSCDRKVCFFAHVAEELRPIYVSTGSAVPLPRSAASAPNVMDMAAATSLYRGLLPTPFALPLSPYANGISPSNNAWPALHFPGRNMFQDIHGQQHMLNDISCFSQPRPGAISVSRPVNSWSKWGSNTGKLDWSVNGNDFDRSQRYTSFEHGNNGDEPDLSWVQSILN*