AlfalfaGEDB | MsaG013144

M. sativa ssp. caerulea / MsaG013144

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0007568 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009819 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010035 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000377 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013144	XP_013443146.1	91.815	562	22	3	1	561	1	539	0.0	1062

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013144	sp\|Q84K00\|NAC78_ARATH	37.370	578	305	19	6	553	10	560	1.38e-101	321

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013144	tr\|A0A072TIW7\|A0A072TIW7_MEDTR	91.815	562	22	3	1	561	1	539	0.0	1062

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TFs/TRs:

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Gene ID	Type	Classification
MsaG013144	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013144	MtrunA17_Chr3g0092671	91.815	562	22	3	1	561	1	539	0.0	1062
MsaG013144	MtrunA17_Chr1g0197361	64.441	599	160	11	2	561	5	589	0.0	734
MsaG013144	MtrunA17_Chr3g0130101	57.143	175	73	2	7	180	9	182	1.33e-67	223
MsaG013144	MtrunA17_Chr1g0197351	60.417	192	67	3	6	190	43	232	1.60e-67	226
MsaG013144	MtrunA17_Chr8g0364791	54.857	175	73	3	6	177	7	178	9.92e-66	220
MsaG013144	MtrunA17_Chr8g0384201	52.571	175	77	3	6	177	7	178	3.12e-62	212
MsaG013144	MtrunA17_Chr1g0201021	47.036	253	109	6	7	253	21	254	1.13e-60	210
MsaG013144	MtrunA17_Chr2g0309891	58.974	156	61	2	7	160	8	162	5.53e-59	199
MsaG013144	MtrunA17_Chr3g0109821	60.736	163	60	3	7	166	8	169	3.21e-58	206
MsaG013144	MtrunA17_Chr5g0433781	36.053	380	191	15	7	354	8	367	5.81e-56	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013144	AT5G04410.1	37.370	578	305	19	6	553	10	560	1.40e-102	321
MsaG013144	AT3G10500.1	38.502	574	286	18	6	553	10	542	8.77e-101	316
MsaG013144	AT3G10490.1	60.847	189	68	4	6	192	28	212	4.26e-74	236
MsaG013144	AT3G10480.1	64.535	172	57	3	6	175	28	197	3.45e-73	241
MsaG013144	AT3G10490.2	64.535	172	57	3	6	175	28	197	8.46e-73	239
MsaG013144	AT3G10480.2	64.327	171	58	3	6	175	28	196	3.84e-72	238
MsaG013144	AT3G10480.3	54.146	205	57	4	6	175	28	230	1.17e-65	223
MsaG013144	AT5G09330.5	57.225	173	72	2	6	177	7	178	4.34e-64	218
MsaG013144	AT5G09330.2	57.225	173	72	2	6	177	7	178	4.34e-64	218
MsaG013144	AT5G09330.4	57.225	173	72	2	6	177	7	178	4.34e-64	218

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Find 168 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGGGTGGTAACTTTC+CGG	0.391365	3:-42491561	None:intergenic
AAAAGCTGATTATCAACCGG+TGG	0.664264	3:-42494714	None:intergenic
AAAGCAAGATGGTCAAAACA+GGG	0.727052	3:-42491575	None:intergenic
AAAGCAAGCCAATAAATTGT+TGG	0.442443	3:+42495843	MsaT013144.1:CDS
AACAGAAGTATCTATCACGG+TGG	0.713901	3:-42495569	None:intergenic
AACTCAGAAGCAAATGCAGG+AGG	0.641960	3:-42495880	None:intergenic
AAGACCCTTGTCTATCACCT+GGG	0.655841	3:+42492746	MsaT013144.1:CDS
AATGAAAGACTGTCCATGGT+TGG	0.583960	3:-42495677	None:intergenic
AATGATCTTACGAATCTTGA+CGG	0.518802	3:+42495538	MsaT013144.1:CDS
AATGTCATGGATTGGATGGC+CGG	0.540061	3:+42496009	MsaT013144.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	42491479	42496224	42491479	ID=MsaG013144
Chr3	mRNA	42491479	42496224	42491479	ID=MsaT013144.1;Parent=MsaG013144
Chr3	exon	42491479	42491635	42491479	ID=MsaT013144.1.exon1;Parent=MsaT013144.1
Chr3	CDS	42491479	42491635	42491479	ID=cds.MsaT013144.1;Parent=MsaT013144.1
Chr3	exon	42492579	42492853	42492579	ID=MsaT013144.1.exon2;Parent=MsaT013144.1
Chr3	CDS	42492579	42492853	42492579	ID=cds.MsaT013144.1;Parent=MsaT013144.1
Chr3	exon	42494591	42494875	42494591	ID=MsaT013144.1.exon3;Parent=MsaT013144.1
Chr3	CDS	42494591	42494875	42494591	ID=cds.MsaT013144.1;Parent=MsaT013144.1
Chr3	exon	42495256	42496224	42495256	ID=MsaT013144.1.exon4;Parent=MsaT013144.1
Chr3	CDS	42495256	42496224	42495256	ID=cds.MsaT013144.1;Parent=MsaT013144.1

Gene Sequence

>MsaT013144.1

ATGTCTCTCTACCAAGCTCCTGGGTTCCGATTCCATCCTACTGATGAAGAGATCGTTTGTTTCTACCTCAAGCGGAAAATCACCGGAAAGTTACCACCCTGTTTTGACCATCTTGCTTTCATCGACATCTACAAGTTTGAACCATGGGATCTTCCTAATATGTCCAAGCTGAAGACTAAGGATTTGGAATGGTACTTCTTCAGTGCGTTGGACAAGAAGTACGGCACTGGATGCAGGACTAATCGTGCTACTGATCGAGGTTATTGGAAGACTACTGGAAAGGACCGGGTTATCAAAAACGGGGAGGAAACAGTTGGAATGAAGAAGACCCTTGTCTATCACCTGGGTCGGGCCCCACATGGTAACCGAAGCAATTGGGTCATGCATGAGTATAGGATGATTGATGAAGAATTGGCCAAAATTGGAGTGCAGGATGCTTATGTGCTGTGTAGGATCTTTGAGAAGAGTGGTTCAGGGCCTAAGAATGGGGAGAAGTATGGGGCTCCCTTTGTGGAGGCAGAATGGCAGAATGTTGATGAACCAGTCGATCCCTTGCCACCGGTTGATAATCAGCTTTTGGAACAACAAGTGGCTGCTCCTGCTCCTGATTACGCTGAATGGTTGCAATCCATGGTGGCGTTTGATAATGATCTTTTGAATGAAAGATTGCCTGCTCCTACTGATGATAATTATCTTGAAATCCTTGACCTTGACCAGGAGCTTGATACTAGTGTTACAGTTGGAAATGCTGATTTGCCACCAAACTTCTATTATGGGGAGTGTAGTAGCTTTCCTCAGCATTCCCAATCGGAAGCTGCTTTTGGTATTTATGATCATCAGGCTGGTCTGTATGGTGCGGATTCAGTGCAAGATGGTTACAATGGCGAGACAAACCATAATGAAAATCCTCTGAACTTCAATTTTGCCTCTGAGGATCCAGATCTGTATTTTGATGCGGCTGAATATCTTAAGGGTTTGAACGAAGAATATGTTGAAACCAATGATCTTACGAATCTTGACGGGGTTGATTCCACCGTGATAGATACTTCTGTTTCTGCACTGCTAGATGAGTACCTTGAATGCCGTGATGAAGAAGATATTACCAAATATATATGCTTTGATTCTGAAAGCCCCATTGCCAACCATGGACAGTCTTTCATTGAGCAGAATGTGGAGGACGAAGCTAATGGTAGTTCCTTGACAAACAATCATGTTTTTGAAGCACAGTATAGTAATGGAGTTTTACCTAAGGAGGATCAAGGAGCTGCATCAAATTGGGTCTCAGGGGGTGAAAATGCTTTTGTAAAGCAAGCCAATAAATTGTTGGCCGGCATACCAGCTCCTCCTGCATTTGCTTCTGAGTTTCCTTCTAAGGAGTTTGCTGTTGGGATGCATTCCGCAGCTGAGTTTTCCAATTCAGCTCATATAACTACCGGTGTGATTAGCATTACAGACATTACTTACAGTGGCAATGTCATGGATTGGATGGCCGGCAAGAATGGAGGTTTTGACACCATAATGTCTACTGAAATTTCCCAAACTGCTGCTATTAACTCTGCTACTGGCTTGGTCTGTAGGAAAACTGCATGTATGTTATCACATGGTTGGGTTTACTTGATGGGTTTCTCAGTTGTGATTCTTTCAATGAGTTTGAAGATTGGAAGCTTCATGTATATGGGTAAATGA

Protein sequence

>MsaT013144.1

MSLYQAPGFRFHPTDEEIVCFYLKRKITGKLPPCFDHLAFIDIYKFEPWDLPNMSKLKTKDLEWYFFSALDKKYGTGCRTNRATDRGYWKTTGKDRVIKNGEETVGMKKTLVYHLGRAPHGNRSNWVMHEYRMIDEELAKIGVQDAYVLCRIFEKSGSGPKNGEKYGAPFVEAEWQNVDEPVDPLPPVDNQLLEQQVAAPAPDYAEWLQSMVAFDNDLLNERLPAPTDDNYLEILDLDQELDTSVTVGNADLPPNFYYGECSSFPQHSQSEAAFGIYDHQAGLYGADSVQDGYNGETNHNENPLNFNFASEDPDLYFDAAEYLKGLNEEYVETNDLTNLDGVDSTVIDTSVSALLDEYLECRDEEDITKYICFDSESPIANHGQSFIEQNVEDEANGSSLTNNHVFEAQYSNGVLPKEDQGAASNWVSGGENAFVKQANKLLAGIPAPPAFASEFPSKEFAVGMHSAAEFSNSAHITTGVISITDITYSGNVMDWMAGKNGGFDTIMSTEISQTAAINSATGLVCRKTACMLSHGWVYLMGFSVVILSMSLKIGSFMYMGK*