AlfalfaGEDB | MsaG013169

M. sativa ssp. caerulea / MsaG013169

KEGG: -
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009790 GO:0009791 GO:0009889 GO:0010015 GO:0010086 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048598 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080050 GO:0080090 GO:0080113 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013169	XP_013459385.1	100.000	92	0	0	1	92	1	92	2.93e-56	178

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013169	sp\|F4JCN9\|PRE4_ARATH	73.118	93	23	2	1	92	1	92	2.72e-38	125

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013169	tr\|I3STA1\|I3STA1_MEDTR	100.000	92	0	0	1	92	1	92	1.40e-56	178

TFs/TRs:

Gene ID	Type	Classification
MsaG013169	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG011389	MsaG013169	0.813165	5.060698e-51	9.342287e-49
MsaG045665	MsaG013169	0.818162	3.946290e-52	8.271467e-50
MsaG045776	MsaG013169	0.806962	1.082263e-49	1.718093e-47
MsaG008757	MsaG013169	0.818472	3.360279e-52	7.099572e-50
MsaG016687	MsaG013169	0.802230	1.039633e-48	1.478450e-46
MsaG017405	MsaG013169	0.812249	8.012372e-51	1.445689e-48
MsaG019268	MsaG013169	0.810747	1.692089e-50	2.942705e-48
MsaG023522	MsaG013169	0.805517	2.173099e-49	3.334308e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013169	MtrunA17_Chr3g0093001	100.000	92	0	0	1	92	1	92	2.70e-60	178
MsaG013169	MtrunA17_Chr7g0217141	72.340	94	23	2	1	92	1	93	7.13e-38	122
MsaG013169	MtrunA17_Chr5g0416431	72.727	77	19	1	17	91	17	93	2.10e-33	110
MsaG013169	MtrunA17_Chr6g0453041	73.077	78	19	1	17	92	15	92	1.25e-32	108
MsaG013169	MtrunA17_Chr8g0362131	66.667	84	25	2	10	91	10	92	2.86e-31	105
MsaG013169	MtrunA17_Chr7g0237771	48.611	72	37	0	8	79	3	74	2.30e-11	54.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013169	AT3G47710.1	73.118	93	23	2	1	92	1	92	2.77e-39	125
MsaG013169	AT1G74500.1	77.922	77	16	1	17	92	17	93	9.83e-36	117
MsaG013169	AT1G26945.1	79.730	74	13	1	19	90	19	92	1.55e-34	114
MsaG013169	AT3G28857.1	65.957	94	27	3	1	91	1	92	1.51e-32	108
MsaG013169	AT5G39860.1	69.231	78	21	2	17	91	15	92	1.01e-29	102
MsaG013169	AT5G15160.1	66.667	75	22	2	19	90	18	92	2.58e-27	95.9

Find 15 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCAGCTTCGAGGGTGTTGC+AGG	0.348972	3:-43846196	MsaT013169.1:CDS
TGAGCGTTTGTCTGAGCTAT+TGG	0.392203	3:-43846124	MsaT013169.1:CDS
AGGAAGAAGTTGCTGCAACT+TGG	0.461097	3:+43847081	None:intergenic
GAGCTCCTATTGCGAATCTC+AGG	0.466230	3:+43847061	None:intergenic
TATATCAGGTTTCAGCTTCG+AGG	0.481740	3:-43846206	MsaT013169.1:intron
TTCTTCCTGAGATTCGCAAT+AGG	0.484861	3:-43847066	MsaT013169.1:CDS
CTAGCAGGAGGTCGCGGTCA+CGG	0.548676	3:-43847156	MsaT013169.1:CDS
ATATCAGGTTTCAGCTTCGA+GGG	0.550730	3:-43846205	MsaT013169.1:intron
GCTCAGACAAACGCTCACTT+AGG	0.559789	3:+43846130	None:intergenic
GCAACTTGGAGACAAGATCA+TGG	0.561243	3:+43847095	None:intergenic
AGATGTCTAGCAGGAGGTCG+CGG	0.564343	3:-43847162	MsaT013169.1:CDS
CACGGCAAACAAGTAGTTCG+AGG	0.585931	3:-43847138	MsaT013169.1:CDS
TCGCAATAGGAGCTCTGACA+AGG	0.593557	3:-43847053	MsaT013169.1:intron
AAGATCATGGATCTGATCGT+CGG	0.643584	3:+43847108	None:intergenic
TTATAAAGATGTCTAGCAGG+AGG	0.648667	3:-43847168	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	43846071	43847182	43846071	ID=MsaG013169
Chr3	mRNA	43846071	43847182	43846071	ID=MsaT013169.1;Parent=MsaG013169
Chr3	exon	43846071	43846220	43846071	ID=MsaT013169.1.exon2;Parent=MsaT013169.1
Chr3	CDS	43846071	43846220	43846071	ID=cds.MsaT013169.1;Parent=MsaT013169.1
Chr3	exon	43847054	43847182	43847054	ID=MsaT013169.1.exon1;Parent=MsaT013169.1
Chr3	CDS	43847054	43847182	43847054	ID=cds.MsaT013169.1;Parent=MsaT013169.1

Gene Sequence	>MsaT013169.1 ATGTCTAGCAGGAGGTCGCGGTCACGGCAAACAAGTAGTTCGAGGAATATCACCGACGATCAGATCCATGATCTTGTCTCCAAGTTGCAGCAACTTCTTCCTGAGATTCGCAATAGGAGCTCTGACAAGGTTTCAGCTTCGAGGGTGTTGCAGGAGACTTGCAACTATATTAGAAACTTGAACAGAGAAGTTGACGACCTAAGTGAGCGTTTGTCTGAGCTATTGGCTACGACAGACACAGCACAAGCAGCAATAATAAGAAATTTACTTATGCAATAG
Protein sequence	>MsaT013169.1 MSSRRSRSRQTSSSRNITDDQIHDLVSKLQQLLPEIRNRSSDKVSASRVLQETCNYIRNLNREVDDLSERLSELLATTDTAQAAIIRNLLMQ*