AlfalfaGEDB | MsaG013179

M. sativa ssp. caerulea / MsaG013179

KEGG: K12412
GO: -
PFAM: PF00319.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013179	RHN66613.1	81.347	193	29	4	18	204	1	192	1.82e-95	286

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013179	sp\|Q9FKK2\|AGL62_ARATH	31.757	148	92	4	53	194	26	170	3.80e-15	75.5

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013179	tr\|A0A396IQ06\|A0A396IQ06_MEDTR	81.347	193	29	4	18	204	1	192	8.68e-96	286

TFs/TRs:

Gene ID	Type	Classification
MsaG013179	TF	MADS-M-type

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000583	MsaG013179	0.828654	1.427985e-54	3.977228e-52
MsaG003111	MsaG013179	0.842197	5.569751e-58	2.330706e-55
MsaG004186	MsaG013179	0.806399	1.421024e-49	2.226226e-47
MsaG005282	MsaG013179	0.822670	3.688917e-53	8.710373e-51
MsaG005559	MsaG013179	0.802618	8.657282e-49	1.242139e-46
MsaG007094	MsaG013179	0.803591	5.457472e-49	8.007854e-47
MsaG007318	MsaG013179	0.816040	1.176860e-51	2.335715e-49
MsaG009327	MsaG013179	0.808354	5.495420e-50	9.019360e-48
MsaG011049	MsaG013179	0.820456	1.191509e-52	2.652430e-50
MsaG012425	MsaG013179	0.811145	1.388937e-50	2.439130e-48
MsaG013179	MsaG013177	0.878195	7.163365e-69	1.189616e-65
MsaG013179	MsaG013426	0.818887	2.707705e-52	5.783109e-50
MsaG013179	MsaG013427	0.890402	2.240544e-73	6.743900e-70
MsaG013179	MsaG017163	0.802823	7.854804e-49	1.132275e-46
MsaG013179	MsaG017393	0.803573	5.504062e-49	8.072864e-47
MsaG013179	MsaG017679	0.803226	6.491441e-49	9.445049e-47
MsaG013179	MsaG018669	0.840726	1.353487e-57	5.405221e-55
MsaG013179	MsaG018705	0.801373	1.555604e-48	2.169519e-46
MsaG013179	MsaG020570	0.813863	3.559816e-51	6.687654e-49
MsaG013179	MsaG024181	0.808189	5.958165e-50	9.740109e-48
MsaG013179	MsaG025074	0.803245	6.432613e-49	9.363554e-47
MsaG013179	MsaG027142	0.805697	1.992804e-49	3.070654e-47
MsaG013179	MsaG027329	0.808364	5.468915e-50	8.978017e-48
MsaG013179	MsaG027808	0.811732	1.037067e-50	1.847607e-48
MsaG013179	MsaG027970	0.826489	4.696486e-54	1.231210e-51
MsaG013179	MsaG028180	0.818872	2.728626e-52	5.825525e-50
MsaG013179	MsaG028507	0.818104	4.067299e-52	8.512199e-50
MsaG013179	MsaG029352	0.809807	2.693208e-50	4.577947e-48
MsaG013179	MsaG030113	0.819136	2.377374e-52	5.111152e-50
MsaG013179	MsaG031143	0.805722	1.969422e-49	3.036374e-47
MsaG013179	MsaG032433	0.847509	2.088004e-59	1.040090e-56
MsaG013179	MsaG033125	0.822178	4.792968e-53	1.116825e-50
MsaG013179	MsaG034555	0.802941	7.429716e-49	1.073929e-46
MsaG013179	MsaG040209	0.804501	3.537298e-49	5.301018e-47
MsaG013179	MsaG041706	0.867534	2.568635e-65	2.688195e-62
MsaG013179	MsaG041979	0.850027	4.214373e-60	2.286011e-57
MsaG013179	MsaG041980	0.804877	2.954203e-49	4.466056e-47
MsaG013179	MsaG045800	0.814764	2.256040e-51	4.335266e-49
MsaG013179	MsaG047079	0.810899	1.569714e-50	2.740029e-48
MsaG013179	MsaG007894	0.873260	3.471473e-67	4.625421e-64
MsaG013179	MsaG028085	0.800457	2.388400e-48	3.262815e-46
MsaG013179	MsaG026617	0.876706	2.351062e-68	3.648572e-65
MsaG013179	MsaG027659	0.802122	1.093926e-48	1.551785e-46
MsaG013179	MsaG033538	0.814352	2.779457e-51	5.286096e-49
MsaG013179	MsaG032077	0.805812	1.886385e-49	2.914457e-47
MsaG013179	MsaG037043	0.826969	3.613023e-54	9.598680e-52
MsaG013179	MsaG037187	0.825236	9.285434e-54	2.350912e-51
MsaG013179	MsaG037387	0.804282	3.926403e-49	5.854613e-47
MsaG013179	MsaG047167	0.824742	1.213219e-53	3.030390e-51

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013179	MtrunA17_Chr3g0093131	81.347	193	29	4	18	204	1	192	1.67e-99	286
MsaG013179	MtrunA17_Chr2g0302091	60.396	202	69	7	1	198	2	196	3.50e-63	194
MsaG013179	MtrunA17_Chr8g0345001	50.857	175	73	6	32	197	10	180	3.38e-46	150
MsaG013179	MtrunA17_Chr2g0333981	36.646	161	94	3	31	185	3	161	8.98e-25	95.5
MsaG013179	MtrunA17_Chr4g0018951	36.842	133	74	2	53	185	31	153	3.10e-22	88.6
MsaG013179	MtrunA17_Chr8g0379021	34.395	157	95	3	35	185	7	161	8.10e-20	82.8
MsaG013179	MtrunA17_Chr4g0071601	33.333	147	88	3	48	185	26	171	2.41e-18	79.0
MsaG013179	MtrunA17_Chr5g0422421	36.129	155	87	4	38	182	7	159	9.19e-18	78.6
MsaG013179	MtrunA17_Chr8g0355091	30.909	165	95	4	31	182	1	159	1.00e-15	73.2
MsaG013179	MtrunA17_Chr3g0099421	32.911	158	88	3	38	182	32	184	1.57e-15	72.8
MsaG013179	MtrunA17_Chr1g0149391	32.298	161	85	5	38	182	7	159	2.01e-15	72.4
MsaG013179	MtrunA17_Chr1g0206721	31.646	158	90	4	38	182	7	159	6.41e-15	70.9
MsaG013179	MtrunA17_Chr1g0206991	32.919	161	84	5	38	182	7	159	7.29e-15	69.7
MsaG013179	MtrunA17_Chr3g0089141	33.125	160	83	5	39	182	8	159	9.39e-15	70.1
MsaG013179	MtrunA17_Chr2g0292791	31.646	158	90	4	38	182	7	159	9.82e-15	70.5
MsaG013179	MtrunA17_Chr1g0206701	31.013	158	91	3	38	182	7	159	1.16e-14	70.1
MsaG013179	MtrunA17_Chr3g0119901	29.861	144	83	3	53	186	28	163	2.10e-14	68.9
MsaG013179	MtrunA17_Chr2g0317481	29.091	165	85	5	38	182	7	159	2.26e-14	69.3
MsaG013179	MtrunA17_Chr2g0317451	29.091	165	85	5	38	182	7	159	2.47e-14	69.3
MsaG013179	MtrunA17_Chr1g0208581	33.125	160	83	5	39	182	8	159	4.88e-14	68.2
MsaG013179	MtrunA17_Chr3g0085241	26.374	182	107	5	15	186	31	195	4.96e-14	68.6
MsaG013179	MtrunA17_Chr1g0208561	32.500	160	84	5	39	182	8	159	7.63e-14	67.8
MsaG013179	MtrunA17_Chr5g0422941	29.878	164	83	4	38	181	7	158	1.45e-13	67.0
MsaG013179	MtrunA17_Chr8g0356071	42.466	73	36	1	41	107	3	75	2.41e-13	65.1
MsaG013179	MtrunA17_Chr2g0300441	33.824	136	78	4	54	182	29	159	7.40e-12	62.4
MsaG013179	MtrunA17_Chr3g0099411	43.056	72	35	1	38	103	7	78	1.27e-11	61.6
MsaG013179	MtrunA17_Chr2g0325971	31.210	157	90	4	39	182	8	159	1.31e-11	61.6
MsaG013179	MtrunA17_Chr8g0357771	46.552	58	31	0	53	110	21	78	1.81e-11	60.5
MsaG013179	MtrunA17_Chr1g0169761	41.096	73	37	1	41	107	3	75	2.94e-11	59.7
MsaG013179	MtrunA17_Chr1g0206691	30.216	139	79	4	53	181	11	141	3.27e-11	60.5
MsaG013179	MtrunA17_Chr8g0376821	42.647	68	33	1	41	102	3	70	3.83e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG013179	AT5G60440.1	31.757	148	92	4	53	194	26	170	3.86e-16	75.5
MsaG013179	AT2G24840.1	28.090	178	106	6	25	192	63	228	5.25e-16	74.7
MsaG013179	AT4G36590.1	29.193	161	96	5	38	182	5	163	1.21e-12	65.1
MsaG013179	AT1G65360.1	29.747	158	92	5	38	182	5	156	4.99e-12	63.2
MsaG013179	AT3G66656.1	51.020	49	24	0	53	101	21	69	8.49e-12	61.6
MsaG013179	AT2G34440.1	29.508	122	80	2	53	171	21	139	8.16e-11	58.9

Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCGCTTCATATCGAAGTCTT+AGG	0.201474	3:+44189308	None:intergenic
TAACACACATTCTCTTGAAT+TGG	0.284587	3:+44189082	None:intergenic
GAATAAATCTATTGATGATA+TGG	0.314688	3:-44189197	MsaT013179.1:CDS
TGAATGACAGCGTCATAGTT+AGG	0.338378	3:+44189400	None:intergenic
TGATATTGAATGAAACCAAC+TGG	0.389424	3:-44189651	MsaT013179.1:CDS
CGCTTCATATCGAAGTCTTA+GGG	0.401643	3:+44189309	None:intergenic
TTGTTTCTCTCGGCCGCCAT+TGG	0.404729	3:+44189586	None:intergenic
CTTCCGTGTGTTGTTTCTCT+CGG	0.413838	3:+44189576	None:intergenic
CCCTTCTCGAAACTCAAACT+TGG	0.418484	3:-44189520	MsaT013179.1:CDS
CTCATCCTCGTCCATATGTC+CGG	0.445428	3:+44189366	None:intergenic
CTTATTCATGTTGTCCCAGT+TGG	0.447593	3:+44189636	None:intergenic
CTTCTTCGCTTCGCTTGCTA+CGG	0.451335	3:+44189117	None:intergenic
CTTCGATATGAAGCGATTCA+AGG	0.460946	3:-44189301	MsaT013179.1:CDS
GAAGGATGAAATCAAGAAAG+AGG	0.477445	3:-44189548	MsaT013179.1:CDS
GATTTATTCCACCAATCAGC+AGG	0.485193	3:+44189211	None:intergenic
GAATGACAGCGTCATAGTTA+GGG	0.502861	3:+44189401	None:intergenic
CTCTTCTTCAAGATCATGGA+TGG	0.520427	3:-44189905	None:intergenic
CATGCATAGAACTTGTTGTT+GGG	0.522753	3:+44189430	None:intergenic
AGGAAAACTTAAAGAAGAGA+AGG	0.524858	3:-44189281	MsaT013179.1:CDS
CAACACACGGAAGAGAAAGA+AGG	0.527351	3:-44189566	MsaT013179.1:CDS
CCAAGTTTGAGTTTCGAGAA+GGG	0.530556	3:+44189520	None:intergenic
TTGATTTGCCTGCTGATTGG+TGG	0.538450	3:-44189219	MsaT013179.1:CDS
TGGGACAACATGAATAAGAA+TGG	0.556319	3:-44189631	MsaT013179.1:CDS
TCCAAGTTTGAGTTTCGAGA+AGG	0.565563	3:+44189519	None:intergenic
ACATGCATAGAACTTGTTGT+TGG	0.594378	3:+44189429	None:intergenic
AACAACAAGTTCTATGCATG+TGG	0.619639	3:-44189427	MsaT013179.1:CDS
GTCTAAGAAGAAAATTCCAA+TGG	0.626985	3:-44189602	MsaT013179.1:CDS
TAAGAAGAAAATTCCAATGG+CGG	0.679668	3:-44189599	MsaT013179.1:CDS
CGGCCGAGAGAAACAACACA+CGG	0.685523	3:-44189579	MsaT013179.1:CDS
TCTGACCGGACATATGGACG+AGG	0.696130	3:-44189371	MsaT013179.1:CDS
GATATTGAATGAAACCAACT+GGG	0.707052	3:-44189650	MsaT013179.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	44189081	44189912	44189081	ID=MsaG013179
Chr3	mRNA	44189081	44189912	44189081	ID=MsaT013179.1;Parent=MsaG013179
Chr3	exon	44189081	44189688	44189081	ID=MsaT013179.1.exon2;Parent=MsaT013179.1
Chr3	CDS	44189081	44189688	44189081	ID=cds.MsaT013179.1;Parent=MsaT013179.1
Chr3	exon	44189906	44189912	44189906	ID=MsaT013179.1.exon1;Parent=MsaT013179.1
Chr3	CDS	44189906	44189912	44189906	ID=cds.MsaT013179.1;Parent=MsaT013179.1

Gene Sequence

>MsaT013179.1

ATGGATGATAATTCTTCATCAGTGATATTGAATGAAACCAACTGGGACAACATGAATAAGAATGGTGAAACGTCTAAGAAGAAAATTCCAATGGCGGCCGAGAGAAACAACACACGGAAGAGAAAGAAGGATGAAATCAAGAAAGAGGAAAAGCCCTTCTCGAAACTCAAACTTGGAATTTTCAACAAAGCAATAGAGCTATCTATTCTATGCGAATCAGAAACTGCACTCATCGTAACATCACCCAACAACAAGTTCTATGCATGTGGCTACCCTAACTATGACGCTGTCATTCATCGTTTTCTGACCGGACATATGGACGAGGATGAGAAAAAGAAGCAAGAAGATGATGACGTTGTTGAAACCCTAAGACTTCGATATGAAGCGATTCAAGGAAAACTTAAAGAAGAGAAGGAGAAATTGCAAGCTGTCAAAGATGCACACAAGAGTAATTTTGATTTGCCTGCTGATTGGTGGAATAAATCTATTGATGATATGGATTTAACATCTCTTGAAGATATTACGACTTCGTTGAATAAATTGAAGATTAATTTGTCCGTAGCAAGCGAAGCGAAGAAGTTCAATTTACATCCAATTCAAGAGAATGTGTGTTAA

Protein sequence

>MsaT013179.1

MDDNSSSVILNETNWDNMNKNGETSKKKIPMAAERNNTRKRKKDEIKKEEKPFSKLKLGIFNKAIELSILCESETALIVTSPNNKFYACGYPNYDAVIHRFLTGHMDEDEKKKQEDDDVVETLRLRYEAIQGKLKEEKEKLQAVKDAHKSNFDLPADWWNKSIDDMDLTSLEDITTSLNKLKINLSVASEAKKFNLHPIQENVC*